Prupe.3G124900_v2.0.a1
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0008930
Physical Location & Seq
Forward (+)
11435801 .. 11439887
4087 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G124900.2

Sequence Viewer

Length: 1149 bp
ATGGGAATGAAGAGCGCTGGAGGAGGAGGCGGAGGAGGAGGAGAGATTATACAAGTTCAAGGAGGCCACATTGTTCGATCCACCGGCCGCAAAGACCGCCACAGCAAGGTCTACACCGCCAAAGGCCCCCGAGACCGCCGCGTCCGGTTGTCTGCCCACACCGCCATCCAATTCTACGATGTTCAAGACCGCCTCGGCTATGACCGCCCTAGCAAAGCGGTTGACTGGCTCATCAAGAAAGCAAAATCCTCCATTGACAAGCTTGCTGAGCTTCCTCCTTGGCACCCTATCACTGGTGTTGCAGCAAACAATGCTGAGCCCGATCAATCCAATCCAAATGAAATGGTGATTGCAGGAGGAGCAGAGCAAACAGAGTCCTCTGGCTACAATTTCCACCAGCTGCAGAGGCAAATGGGTGAGAATAACAACAACCACCAAGCAAATAATGTTTCAAGCTTCAACATTCCTCCATCTCTAGACTCAGACACCATAGCTGACACCATGAAATCATTCTTCCCCACAAGCTCAGCAGCCACTTCATCCATCAATTTCCAAAGCTACCCACCTGATCATGATCTGATTTCAAGAACCACCAACCTAAACCCTTGCCAAGACCTTGGCCTCTCTCTCCACTCTTTCCAAGACCAAGGCCTAAACATCCATCACACTCACAGCCAGCAATCCCAAGGAGACACCAACCACAACAACGATCAGATTCAGACCCTTTTCGCCGCCGGGGCGGGAGGATCAACGGTGGGATTTGACACTAGTTATCAGAGAATGGTGGCATGGAGCAATCAGAACAGAGGAGGTGATGGTGGATTTGTATTCAACTCACACTCACAAGCATTGCCACAGCAAGCATATGCTCATGCTCAGGGGGGTACCCTTCAGTCCAGTTTTTCGCCATCAGTTTCAGCTCGGGCCTGGAACGATTCTTCTATCTTTGGCACACAGCAGAGAACACAGCAGCAGCAGCAGCAGCAGCCAATGATTCACCATTCTTCAATCTTTGGCACCCGCTTCGCCTCTGATGGCGGCTTGCCTGTGTTCTGCATCCCGACGCGTATTGACGCTGAGGAGGCGGATAATGGCGGTGTTCCAGATCGACCATCATCCACTTCCTCTCCCAATTCCACCCACCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCP

Protein Analysis

383

Amino Acids

41.28

Weight (kDa)

6.4

Isoelectric Point (pI)

48.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 140
Acc65I GGTACC 1 cut(s) 884
AccB1I GGYRCC 3 cut(s) 282, 884, 1016
AccI GTMKAC 1 cut(s) 111
AccII CGCG 2 cut(s) 141, 1066
AclWI GGATC 2 cut(s) 72, 754
AcoI YGGCCR 1 cut(s) 85
AcuI CTGAAG 1 cut(s) 875
AfaI GTAC 1 cut(s) 886
AfeI AGCGCT 1 cut(s) 16
AfiI CCNNNNNNNGG 2 cut(s) 106, 293
AflIII ACRYGT 1 cut(s) 1064
AgsI TTSAA 7 cut(s) 59, 185, 453, 460, 585, 832, 1008
AhlI ACTAGT 1 cut(s) 767
AjnI CCWGG 1 cut(s) 926
AluBI AGCT 8 cut(s) 262, 271, 400, 456, 494, 525, 558, 920
AluI AGCT 8 cut(s) 262, 271, 400, 456, 494, 525, 558, 920
Alw26I GTCTC 2 cut(s) 126, 684
AlwI GGATC 2 cut(s) 72, 754
Ama87I CYCGRG 2 cut(s) 129, 921
Aor51HI AGCGCT 1 cut(s) 16
AoxI GGCC 6 cut(s) 64, 85, 124, 619, 649, 924
ApeKI GCWGC 9 cut(s) 302, 400, 530, 970, 973, 976, 979, 982, 985
Asp700I GAANNNNTTC 1 cut(s) 509
Asp718I GGTACC 1 cut(s) 884
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 2 cut(s) 125, 924
AsuC2I CCSGG 1 cut(s) 736
AsuHPI GGTGA 4 cut(s) 358, 428, 824, 989
AvaI CYCGRG 2 cut(s) 129, 921
BanI GGYRCC 3 cut(s) 282, 884, 1016
BanII GRGCYC 1 cut(s) 321
BbvCI CCTCAGC 1 cut(s) 1077
BbvI GCAGC 9 cut(s) 314, 387, 542, 982, 985, 988, 991, 994, 997
BccI CCATC 8 cut(s) 173, 478, 551, 669, 809, 916, 1028, 1120
BcgI CGANNNNNNTGC 2 cut(s) 1006, 1040
BciT130I CCWGG 1 cut(s) 928
BclI TGATCA 1 cut(s) 568
BcnI CCSGG 1 cut(s) 736
BcoDI GTCTC 2 cut(s) 126, 684
BcuI ACTAGT 1 cut(s) 767
BfaI CTAG 3 cut(s) 210, 476, 768
BfmI CTRYAG 1 cut(s) 401
BfoI RGCGCY 1 cut(s) 18
BglI GCCNNNNNGGC 1 cut(s) 737
BlpI GCTNAGC 3 cut(s) 267, 315, 526
Bme1390I CCNGG 2 cut(s) 736, 928
BmeT110I CYCGRG 2 cut(s) 129, 921
BmgT120I GGNCC 2 cut(s) 125, 924
BmiI GGNNCC 4 cut(s) 127, 284, 886, 1018
BmrFI CCNGG 2 cut(s) 736, 928
BmsI GCATC 1 cut(s) 1065
BpmI CTGGAG 1 cut(s) 39
Bpu10I CCTNAGC 2 cut(s) 876, 1077
Bpu1102I GCTNAGC 3 cut(s) 267, 315, 526
BpuMI CCSGG 1 cut(s) 736
BsaBI GATNNNNATC 1 cut(s) 573
BsaI GGTCTC 1 cut(s) 126
BsaJI CCNNGG 6 cut(s) 193, 278, 616, 646, 685, 735
BsaWI WCCGGW 1 cut(s) 144
BsaXI ACNNNNNCTCC 2 cut(s) 1111, 1141
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 293
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 3 cut(s) 230, 298, 897
Bse3DI GCAATG 1 cut(s) 848
Bse8I GATNNNNATC 1 cut(s) 573
BseBI CCWGG 1 cut(s) 928
BseDI CCNNGG 6 cut(s) 193, 278, 616, 646, 685, 735
BseGI GGATG 5 cut(s) 165, 539, 657, 1056, 1115
BseJI GATNNNNATC 1 cut(s) 573
BseLI CCNNNNNNNGG 2 cut(s) 106, 293
BseMI GCAATG 1 cut(s) 848
BseMII CTCAG 6 cut(s) 258, 306, 495, 540, 890, 1068
BseNI ACTGG 3 cut(s) 230, 298, 897
BseRI GAGGAG 8 cut(s) 36, 39, 48, 51, 54, 372, 822, 1094
BseX3I CGGCCG 1 cut(s) 85
BseXI GCAGC 9 cut(s) 314, 387, 542, 982, 985, 988, 991, 994, 997
Bsh1236I CGCG 2 cut(s) 141, 1066
Bsh1285I CGRYCG 1 cut(s) 88
BshFI GGCC 6 cut(s) 66, 87, 126, 621, 651, 926
BshNI GGYRCC 3 cut(s) 282, 884, 1016
BsiEI CGRYCG 1 cut(s) 88
BsiHKCI CYCGRG 2 cut(s) 129, 921
BsiSI CCGG 3 cut(s) 84, 145, 735
BslI CCNNNNNNNGG 2 cut(s) 106, 293
BsmAI GTCTC 2 cut(s) 126, 684
BsnI GGCC 6 cut(s) 66, 87, 126, 621, 651, 926
Bso31I GGTCTC 1 cut(s) 126
BsoBI CYCGRG 2 cut(s) 129, 921
Bsp1286I GDGCHC 1 cut(s) 321
Bsp143I GATC 7 cut(s) 77, 322, 568, 574, 709, 746, 1105
Bsp1720I GCTNAGC 3 cut(s) 267, 315, 526
BspANI GGCC 6 cut(s) 66, 87, 126, 621, 651, 926
BspCNI CTCAG 6 cut(s) 259, 307, 494, 539, 889, 1069
BspFNI CGCG 2 cut(s) 141, 1066
BspHI TCATGA 1 cut(s) 571
BspLI GGNNCC 4 cut(s) 127, 284, 886, 1018
BspMAI CTGCAG 1 cut(s) 405
BspPI GGATC 2 cut(s) 72, 754
BspQI GCTCTTC 1 cut(s) 5
BspT107I GGYRCC 3 cut(s) 282, 884, 1016
BspTNI GGTCTC 1 cut(s) 126
BsrDI GCAATG 1 cut(s) 848
BsrFI RCCGGY 1 cut(s) 83
BsrI ACTGG 3 cut(s) 230, 298, 897
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 6 cut(s) 193, 278, 616, 646, 685, 735
BssMI GATC 7 cut(s) 77, 322, 568, 574, 709, 746, 1105
BssT1I CCWWGG 4 cut(s) 278, 616, 646, 685
Bst2UI CCWGG 1 cut(s) 928
Bst4CI ACNGT 1 cut(s) 754
Bst6I CTCTTC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 311
BstC8I GCNNGC 4 cut(s) 264, 677, 861, 1043
BstDEI CTNAG 6 cut(s) 267, 315, 481, 526, 876, 1077
BstF5I GGATG 5 cut(s) 165, 539, 657, 1056, 1115
BstFNI CGCG 2 cut(s) 141, 1066
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 7 cut(s) 80, 325, 571, 577, 712, 749, 1108
BstMAI GTCTC 2 cut(s) 126, 684
BstMBI GATC 7 cut(s) 77, 322, 568, 574, 709, 746, 1105
BstMCI CGRYCG 1 cut(s) 88
BstNI CCWGG 1 cut(s) 928
BstSCI CCNGG 2 cut(s) 734, 926
BstSFI CTRYAG 1 cut(s) 401
BstUI CGCG 2 cut(s) 141, 1066
BstV1I GCAGC 9 cut(s) 314, 387, 542, 982, 985, 988, 991, 994, 997
BstXI CCANNNNNNTGG 1 cut(s) 617
BstZI CGGCCG 1 cut(s) 85
BsuRI GGCC 6 cut(s) 66, 87, 126, 621, 651, 926
BtsCI GGATG 5 cut(s) 165, 539, 657, 1056, 1115
BtsIMutI CAGTG 1 cut(s) 291
Cac8I GCNNGC 4 cut(s) 264, 677, 861, 1043
CciI TCATGA 1 cut(s) 571
CfoI GCGC 1 cut(s) 17
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 2 cut(s) 125, 924
CseI GACGC 3 cut(s) 130, 1072, 1082
Csp6I GTAC 1 cut(s) 885
CviAII CATG 4 cut(s) 502, 572, 789, 872
CviQI GTAC 1 cut(s) 885
DdeI CTNAG 6 cut(s) 267, 315, 481, 526, 876, 1077
DpnI GATC 7 cut(s) 79, 324, 570, 576, 711, 748, 1107
DpnII GATC 7 cut(s) 77, 322, 568, 574, 709, 746, 1105
DrdI GACNNNNNNGTC 1 cut(s) 140
DseDI GACNNNNNNGTC 1 cut(s) 140
EaeI YGGCCR 1 cut(s) 85
EagI CGGCCG 1 cut(s) 85
Eam1104I CTCTTC 1 cut(s) 5
EarI CTCTTC 1 cut(s) 5
EciI GGCGGA 2 cut(s) 45, 1100
EclXI CGGCCG 1 cut(s) 85
Eco130I CCWWGG 4 cut(s) 278, 616, 646, 685
Eco147I AGGCCT 1 cut(s) 651
Eco24I GRGCYC 1 cut(s) 321
Eco31I GGTCTC 1 cut(s) 126
Eco47III AGCGCT 1 cut(s) 16
Eco52I CGGCCG 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 875
Eco88I CYCGRG 2 cut(s) 129, 921
EcoO109I RGGNCCY 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 926
EcoT14I CCWWGG 4 cut(s) 278, 616, 646, 685
EcoT38I GRGCYC 1 cut(s) 321
ErhI CCWWGG 4 cut(s) 278, 616, 646, 685
FaeI CATG 4 cut(s) 505, 575, 792, 875
FaiI YATR 9 cut(s) 50, 201, 491, 503, 573, 790, 865, 867, 873
FatI CATG 4 cut(s) 501, 571, 788, 871
FauI CCCGC 2 cut(s) 733, 1028
FauNDI CATATG 1 cut(s) 865
FbaI TGATCA 1 cut(s) 568
FblI GTMKAC 1 cut(s) 111
FokI GGATG 5 cut(s) 152, 526, 644, 1043, 1102
FriOI GRGCYC 1 cut(s) 321
FspBI CTAG 3 cut(s) 210, 476, 768
GlaI GCGC 1 cut(s) 16
GsuI CTGGAG 1 cut(s) 39
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 6 cut(s) 66, 87, 126, 621, 651, 926
HapII CCGG 3 cut(s) 84, 145, 735
HgaI GACGC 3 cut(s) 130, 1072, 1082
HhaI GCGC 1 cut(s) 17
Hin1II CATG 4 cut(s) 505, 575, 792, 875
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HindIII AAGCTT 2 cut(s) 260, 454
HinfI GANTC 5 cut(s) 374, 479, 715, 935, 994
HpaII CCGG 3 cut(s) 84, 145, 735
HphI GGTGA 4 cut(s) 358, 428, 824, 989
Hpy166II GTNNAC 2 cut(s) 112, 223
Hpy188I TCNGA 7 cut(s) 484, 579, 714, 720, 777, 801, 1033
Hpy188III TCNNGA 7 cut(s) 185, 235, 476, 572, 585, 1060, 1103
Hpy8I GTNNAC 2 cut(s) 112, 223
Hpy99I CGWCG 1 cut(s) 1066
HpyAV CCTTC 1 cut(s) 899
HpyCH4III ACNGT 1 cut(s) 754
HpyCH4V TGCA 4 cut(s) 302, 353, 403, 1056
HpyF3I CTNAG 6 cut(s) 267, 315, 481, 526, 876, 1077
Hsp92II CATG 4 cut(s) 505, 575, 792, 875
HspAI GCGC 1 cut(s) 15
KpnI GGTACC 1 cut(s) 888
Ksp22I TGATCA 1 cut(s) 568
Kzo9I GATC 7 cut(s) 77, 322, 568, 574, 709, 746, 1105
LguI GCTCTTC 1 cut(s) 5
LmnI GCTCC 2 cut(s) 359, 792
Lsp1109I GCAGC 9 cut(s) 314, 387, 542, 982, 985, 988, 991, 994, 997
LweI GCATC 1 cut(s) 1065
MaeI CTAG 3 cut(s) 210, 476, 768
MalI GATC 7 cut(s) 79, 324, 570, 576, 711, 748, 1107
MboI GATC 7 cut(s) 77, 322, 568, 574, 709, 746, 1105
MboII GAAGA 4 cut(s) 22, 505, 930, 996
MhlI GDGCHC 1 cut(s) 321
MluCI AATT 4 cut(s) 170, 388, 547, 1132
MluI ACGCGT 1 cut(s) 1064
MlyI GAGTC 2 cut(s) 383, 473
MroXI GAANNNNTTC 1 cut(s) 509
MspA1I CMGCKG 1 cut(s) 400
MspI CCGG 3 cut(s) 84, 145, 735
MspR9I CCNGG 2 cut(s) 736, 928
MvaI CCWGG 1 cut(s) 928
MvnI CGCG 2 cut(s) 141, 1066
NciI CCSGG 1 cut(s) 736
NdeI CATATG 1 cut(s) 865
NdeII GATC 7 cut(s) 77, 322, 568, 574, 709, 746, 1105
NlaIII CATG 4 cut(s) 505, 575, 792, 875
NlaIV GGNNCC 4 cut(s) 127, 284, 886, 1018
NmeAIII GCCGAG 1 cut(s) 174
PagI TCATGA 1 cut(s) 571
PceI AGGCCT 1 cut(s) 651
PciSI GCTCTTC 1 cut(s) 5
PdmI GAANNNNTTC 1 cut(s) 509
PfeI GAWTC 3 cut(s) 715, 935, 994
PleI GAGTC 2 cut(s) 382, 473
PpsI GAGTC 2 cut(s) 382, 473
Psp6I CCWGG 1 cut(s) 926
PspGI CCWGG 1 cut(s) 926
PspN4I GGNNCC 4 cut(s) 127, 284, 886, 1018
PspPI GGNCC 2 cut(s) 125, 924
PstI CTGCAG 1 cut(s) 405
PvuII CAGCTG 1 cut(s) 400
RsaI GTAC 1 cut(s) 886
RsaNI GTAC 1 cut(s) 885
SapI GCTCTTC 1 cut(s) 5
Sau3AI GATC 7 cut(s) 77, 322, 568, 574, 709, 746, 1105
Sau96I GGNCC 2 cut(s) 125, 924
SchI GAGTC 2 cut(s) 383, 473
ScrFI CCNGG 2 cut(s) 736, 928
SduI GDGCHC 1 cut(s) 321
SfaNI GCATC 1 cut(s) 1065
SfcI CTRYAG 1 cut(s) 401
SpeI ACTAGT 1 cut(s) 767
Sse9I AATT 4 cut(s) 170, 388, 547, 1132
SseBI AGGCCT 1 cut(s) 651
SspMI CTAG 3 cut(s) 210, 476, 768
StuI AGGCCT 1 cut(s) 651
StyD4I CCNGG 2 cut(s) 734, 926
StyI CCWWGG 4 cut(s) 278, 616, 646, 685
TaaI ACNGT 1 cut(s) 754
TaqI TCGA 2 cut(s) 76, 1108
TasI AATT 4 cut(s) 170, 388, 547, 1132
TauI GCSGC 4 cut(s) 90, 141, 734, 1041
TfiI GAWTC 3 cut(s) 715, 935, 994
TscAI CASTG 1 cut(s) 298
TseI GCWGC 9 cut(s) 302, 400, 530, 970, 973, 976, 979, 982, 985
TspDTI ATGAA 4 cut(s) 23, 354, 518, 528
TspRI CASTG 1 cut(s) 298
XbaI TCTAGA 1 cut(s) 475
XmiI GTMKAC 1 cut(s) 111
XmnI GAANNNNTTC 1 cut(s) 509
XspI CTAG 3 cut(s) 210, 476, 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.