RLG00000027864
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0008930
Physical Location & Seq
Forward (+)
16233624 .. 16234019
396 bp
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UTR
Exon/CDS
Intron
RLM00000027864

Sequence Viewer

Length: 396 bp
ATGTCACATTGTTCGTGCAAGTCCAAGGAGGTCACATTGTTTTATCCACTAGCCGGAAAGACCGCCACAGCAAGGTTTACACTGCAAAAGGCCCCAAAGACCGCCGTGTCAGGTTGTCAGCCCACACCGCCATCCAATTCTACGATGTTCAACCAGCTGGGCTACTATAGGCCCACTAAAGCCTTGGATTGGCTCATCAAGAAGGCGAAAACCGCCATTGAAAAGCTTGCAGAGCTTCCACCTTGGCACCCAACTGGTGTTGCGGCTAATGCTACACAAGGTGAAGTTCCGAATGGGGCTGGAACCAGTGATATGGTGATCTCAACTGAGCAATCTGAGTCATCTGGCTACAATTTCCAGCTCCAAAGACAAATTGGGGACAACCCAGATCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCP

Protein Analysis

132

Amino Acids

14.19

Weight (kDa)

8.81

Isoelectric Point (pI)

42.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 106
AccB1I GGYRCC 1 cut(s) 246
AciI CCGC 5 cut(s) 63, 102, 128, 213, 263
AdeI CACNNNGTG 1 cut(s) 281
AfiI CCNNNNNNNGG 3 cut(s) 53, 72, 189
AgsI TTSAA 2 cut(s) 151, 221
AluBI AGCT 4 cut(s) 157, 226, 235, 361
AluI AGCT 4 cut(s) 157, 226, 235, 361
AoxI GGCC 2 cut(s) 90, 170
AspS9I GGNCC 2 cut(s) 91, 171
AsuHPI GGTGA 2 cut(s) 293, 328
BanI GGYRCC 1 cut(s) 246
BccI CCATC 1 cut(s) 139
BceAI ACGGC 1 cut(s) 89
BfaI CTAG 2 cut(s) 50, 394
BfmI CTRYAG 1 cut(s) 166
BisI GCNGC 1 cut(s) 264
BlsI GCNGC 1 cut(s) 265
BmgT120I GGNCC 2 cut(s) 91, 171
BmiI GGNNCC 3 cut(s) 93, 248, 304
BsaJI CCNNGG 3 cut(s) 24, 183, 242
Bsc4I CCNNNNNNNGG 3 cut(s) 53, 72, 189
Bse1I ACTGG 2 cut(s) 259, 306
BseDI CCNNGG 3 cut(s) 24, 183, 242
BseGI GGATG 1 cut(s) 131
BseLI CCNNNNNNNGG 3 cut(s) 53, 72, 189
BseMII CTCAG 2 cut(s) 318, 327
BseNI ACTGG 2 cut(s) 259, 306
BseYI CCCAGC 1 cut(s) 157
BshFI GGCC 2 cut(s) 92, 172
BshNI GGYRCC 1 cut(s) 246
BsiSI CCGG 1 cut(s) 54
BslFI GGGAC 1 cut(s) 392
BslI CCNNNNNNNGG 3 cut(s) 53, 72, 189
BsmFI GGGAC 1 cut(s) 392
BsnI GGCC 2 cut(s) 92, 172
Bsp143I GATC 2 cut(s) 318, 388
BspACI CCGC 5 cut(s) 63, 102, 128, 213, 263
BspANI GGCC 2 cut(s) 92, 172
BspCNI CTCAG 2 cut(s) 319, 328
BspLI GGNNCC 3 cut(s) 93, 248, 304
BspT107I GGYRCC 1 cut(s) 246
BsrI ACTGG 2 cut(s) 259, 306
BssECI CCNNGG 3 cut(s) 24, 183, 242
BssMI GATC 2 cut(s) 318, 388
BssT1I CCWWGG 3 cut(s) 24, 183, 242
BstC8I GCNNGC 1 cut(s) 228
BstDEI CTNAG 2 cut(s) 327, 336
BstF5I GGATG 1 cut(s) 131
BstKTI GATC 2 cut(s) 321, 391
BstMBI GATC 2 cut(s) 318, 388
BstMWI GCNNNNNNNGC 4 cut(s) 127, 212, 232, 269
BstSFI CTRYAG 1 cut(s) 166
BstXI CCANNNNNNTGG 1 cut(s) 313
BsuRI GGCC 2 cut(s) 92, 172
BtsCI GGATG 1 cut(s) 131
BtsI GCAGTG 1 cut(s) 80
BtsIMutI CAGTG 2 cut(s) 80, 313
Cac8I GCNNGC 1 cut(s) 228
Cfr13I GGNCC 2 cut(s) 91, 171
DdeI CTNAG 2 cut(s) 327, 336
DpnI GATC 2 cut(s) 320, 390
DpnII GATC 2 cut(s) 318, 388
DraIII CACNNNGTG 1 cut(s) 281
DrdI GACNNNNNNGTC 1 cut(s) 106
DseDI GACNNNNNNGTC 1 cut(s) 106
Eco130I CCWWGG 3 cut(s) 24, 183, 242
EcoO109I RGGNCCY 1 cut(s) 91
EcoT14I CCWWGG 3 cut(s) 24, 183, 242
ErhI CCWWGG 3 cut(s) 24, 183, 242
FaiI YATR 2 cut(s) 168, 314
FaqI GGGAC 1 cut(s) 392
Fnu4HI GCNGC 1 cut(s) 264
FokI GGATG 1 cut(s) 118
Fsp4HI GCNGC 1 cut(s) 264
FspBI CTAG 2 cut(s) 50, 394
GluI GCNGC 1 cut(s) 264
GsaI CCCAGC 1 cut(s) 161
HaeIII GGCC 2 cut(s) 92, 172
HapII CCGG 1 cut(s) 54
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 1 cut(s) 338
HpaII CCGG 1 cut(s) 54
HphI GGTGA 2 cut(s) 293, 328
Hpy166II GTNNAC 1 cut(s) 78
Hpy188I TCNGA 2 cut(s) 291, 337
Hpy188III TCNNGA 1 cut(s) 199
Hpy8I GTNNAC 1 cut(s) 78
HpyAV CCTTC 1 cut(s) 196
HpyCH4V TGCA 3 cut(s) 18, 85, 230
HpyF10VI GCNNNNNNNGC 4 cut(s) 127, 212, 232, 269
HpyF3I CTNAG 2 cut(s) 327, 336
Kzo9I GATC 2 cut(s) 318, 388
LmnI GCTCC 1 cut(s) 366
LpnPI CCDG 9 cut(s) 67, 96, 143, 167, 240, 285, 319, 330, 371
MaeI CTAG 2 cut(s) 50, 394
MaeIII GTNAC 2 cut(s) 3, 31
MalI GATC 2 cut(s) 320, 390
MboI GATC 2 cut(s) 318, 388
MluCI AATT 3 cut(s) 136, 352, 372
MlyI GAGTC 1 cut(s) 347
MnlI CCTC 1 cut(s) 22
MspA1I CMGCKG 1 cut(s) 157
MspI CCGG 1 cut(s) 54
MwoI GCNNNNNNNGC 4 cut(s) 127, 212, 232, 269
NdeII GATC 2 cut(s) 318, 388
NlaIV GGNNCC 3 cut(s) 93, 248, 304
NmuCI GTSAC 2 cut(s) 3, 31
PkrI GCNGC 1 cut(s) 265
PleI GAGTC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 346
PspFI CCCAGC 1 cut(s) 157
PspN4I GGNNCC 3 cut(s) 93, 248, 304
PspPI GGNCC 2 cut(s) 91, 171
PvuII CAGCTG 1 cut(s) 157
SatI GCNGC 1 cut(s) 264
Sau3AI GATC 2 cut(s) 318, 388
Sau96I GGNCC 2 cut(s) 91, 171
SchI GAGTC 1 cut(s) 347
SetI ASST 9 cut(s) 33, 77, 115, 159, 228, 237, 244, 283, 363
SfcI CTRYAG 1 cut(s) 166
Sse9I AATT 3 cut(s) 136, 352, 372
SsiI CCGC 5 cut(s) 63, 102, 128, 213, 263
SspMI CTAG 2 cut(s) 50, 394
StyI CCWWGG 3 cut(s) 24, 183, 242
TasI AATT 3 cut(s) 136, 352, 372
TauI GCSGC 1 cut(s) 266
TscAI CASTG 2 cut(s) 87, 313
TseFI GTSAC 2 cut(s) 3, 31
Tsp45I GTSAC 2 cut(s) 3, 31
TspRI CASTG 2 cut(s) 87, 313
XcmI CCANNNNNNNNNTGG 2 cut(s) 181, 371
XspI CTAG 2 cut(s) 50, 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.