MD17G1233500.v1.1
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0008930
Physical Location & Seq
Forward (+)
28210166 .. 28212381
2216 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1233500.v1.1.491

Sequence Viewer

Length: 1065 bp
ATGGGAATGGAGGGTTGTGGGGGAGAGATTGTAGAAGTCCAAGGCGGCCACATTGTTCGATCCACCGGACGCAAAGACCGTCACAGCAAGATTTACACCGCCAAAGGCCCCAGAGACCGCCGTGTCCGGTTGTCCGCCCACACTGCCATCCAATTCTATGATGTTCAAGACCGCCTCGGATATGATAGACCCAGTAAAGCCGTGGACTGGCTCATCAAGAAGGCCAAATCTTCCATTGACAAGCTCGTTGAGCTTCCACCTTGGCATCCTATCACTACTAGTAACCATGCTGCCGAAGCTGATGATCCGTTTCGATCATCAAATCCAAATCCAAATGGACCAAATCCAAATGATATGGTAATTGCCGCAGCTGAGCAGCAATCAGAGTCCTCCACCAGCTACAACTTTAACTTTGAGCTCCAAAGGCAAAGGCAATCAGACAACGATTCGAACTTCAACATTCCGCCATCTCTAGACTCAGACAACATAGCTGACACCATGAAGTCCTTCTTCCCCACAAACACTAGTAGCAACGCCGCCGCTGCTTCCTCCGTTGACGATTTCCGTAGTTACCCAACCGATCCCCATCTAATTTCAGCAACTACCCAAGACCTTGGCCTCTCTCTCCACTCTTTCCAAGACCAAGGCCTAAACATTCATCACAATCACACTCACACTCAGCAGTCCTCTCAAGCCCTTTTCGCCGCCGCAGTGGGAACTGGATTTGACTCCTCCAGTTATCAGAGAATGGTGGCATGGAGCAATGAAAACAGAGGACTTGATGGGGGCTTTGTATTCAACTCACACTCTCACTCATATTCTCAGCCTCAGCCTCACAATCATGGGGGTGATGGGAATCATGGGAGTACCCTTCAGTCCAGTTTTACGCCATCAGTTTCCACACGCGCTTGGCAGCAGCAGCACTCTTCAATCTTTGGCACCCGCTTCGGCACCTCTGACGGCACCTCGCCTGTCTTCTGCATTCAAGGTGAGGAGGCTGAGAATGGTACTATTTCAGATCGACCGTCTTCCACTTCCTCTCTCAATTCAACCCGCCAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCP

Protein Analysis

355

Amino Acids

38.73

Weight (kDa)

5.98

Isoelectric Point (pI)

48.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 23 - 123 1.3e-31 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 122
AccB1I GGYRCC 3 cut(s) 938, 950, 962
AccII CGCG 1 cut(s) 906
AclWI GGATC 3 cut(s) 54, 299, 575
AcoI YGGCCR 1 cut(s) 46
AcuI CTGAAG 1 cut(s) 857
AfaI GTAC 2 cut(s) 868, 1009
AfiI CCNNNNNNNGG 1 cut(s) 207
AgsI TTSAA 6 cut(s) 167, 457, 799, 930, 986, 1050
AhlI ACTAGT 2 cut(s) 278, 524
AluBI AGCT 8 cut(s) 244, 253, 299, 371, 399, 418, 491, 1060
AluI AGCT 8 cut(s) 244, 253, 299, 371, 399, 418, 491, 1060
Alw21I GWGCWC 1 cut(s) 420
Alw26I GTCTC 1 cut(s) 108
AlwI GGATC 3 cut(s) 54, 299, 575
AoxI GGCC 5 cut(s) 46, 106, 222, 616, 646
ApeKI GCWGC 7 cut(s) 290, 368, 376, 542, 913, 916, 919
Asp700I GAANNNNTTC 1 cut(s) 506
AspLEI GCGC 1 cut(s) 908
AspS9I GGNCC 2 cut(s) 107, 338
AsuHPI GGTGA 2 cut(s) 860, 1001
AsuII TTCGAA 1 cut(s) 449
AvaII GGWCC 1 cut(s) 338
BanI GGYRCC 3 cut(s) 938, 950, 962
BanII GRGCYC 1 cut(s) 420
BbsI GAAGAC 2 cut(s) 967, 1020
Bbv12I GWGCWC 1 cut(s) 420
BbvCI CCTCAGC 1 cut(s) 828
BbvI GCAGC 7 cut(s) 277, 380, 388, 529, 925, 928, 931
BccI CCATC 6 cut(s) 155, 475, 594, 776, 845, 898
BceAI ACGGC 3 cut(s) 105, 185, 976
BcgI CGANNNNNNTGC 2 cut(s) 928, 962
BcoDI GTCTC 1 cut(s) 108
BcuI ACTAGT 2 cut(s) 278, 524
BfaI CTAG 3 cut(s) 279, 473, 525
BlpI GCTNAGC 1 cut(s) 372
Bme18I GGWCC 1 cut(s) 338
BmgT120I GGNCC 2 cut(s) 107, 338
BmiI GGNNCC 4 cut(s) 109, 940, 952, 964
BmrI ACTGGG 1 cut(s) 186
BmsI GCATC 1 cut(s) 274
BmuI ACTGGG 1 cut(s) 186
BpiI GAAGAC 2 cut(s) 967, 1020
BpmI CTGGAG 1 cut(s) 718
Bpu10I CCTNAGC 1 cut(s) 828
Bpu1102I GCTNAGC 1 cut(s) 372
Bpu14I TTCGAA 1 cut(s) 449
BpuEI CTTGAG 1 cut(s) 675
BsaBI GATNNNNATC 2 cut(s) 585, 855
BsaI GGTCTC 1 cut(s) 108
BsaJI CCNNGG 6 cut(s) 40, 175, 201, 260, 613, 643
BsaWI WCCGGW 2 cut(s) 65, 126
BsaXI ACNNNNNCTCC 2 cut(s) 15, 45
Bsc4I CCNNNNNNNGG 1 cut(s) 207
Bse1I ACTGG 5 cut(s) 192, 212, 724, 735, 879
Bse3DI GCAATG 1 cut(s) 769
Bse8I GATNNNNATC 2 cut(s) 585, 855
BseDI CCNNGG 6 cut(s) 40, 175, 201, 260, 613, 643
BseGI GGATG 2 cut(s) 147, 265
BseJI GATNNNNATC 2 cut(s) 585, 855
BseLI CCNNNNNNNGG 1 cut(s) 207
BseMI GCAATG 1 cut(s) 769
BseMII CTCAG 6 cut(s) 363, 492, 692, 836, 842, 990
BseNI ACTGG 5 cut(s) 192, 212, 724, 735, 879
BseRI GAGGAG 2 cut(s) 721, 1007
BseXI GCAGC 7 cut(s) 277, 380, 388, 529, 925, 928, 931
Bsh1236I CGCG 1 cut(s) 906
Bsh1285I CGRYCG 1 cut(s) 1025
BshFI GGCC 5 cut(s) 48, 108, 224, 618, 648
BshNI GGYRCC 3 cut(s) 938, 950, 962
BsiEI CGRYCG 1 cut(s) 1025
BsiHKAI GWGCWC 1 cut(s) 420
BsiSI CCGG 2 cut(s) 66, 127
BslI CCNNNNNNNGG 1 cut(s) 207
BsmAI GTCTC 1 cut(s) 108
BsmI GAATGC 1 cut(s) 981
BsnI GGCC 5 cut(s) 48, 108, 224, 618, 648
Bso31I GGTCTC 1 cut(s) 108
Bsp119I TTCGAA 1 cut(s) 449
Bsp1286I GDGCHC 1 cut(s) 420
Bsp143I GATC 5 cut(s) 59, 304, 314, 580, 1018
Bsp1720I GCTNAGC 1 cut(s) 372
BspANI GGCC 5 cut(s) 48, 108, 224, 618, 648
BspCNI CTCAG 6 cut(s) 364, 491, 691, 835, 841, 991
BspFNI CGCG 1 cut(s) 906
BspLI GGNNCC 4 cut(s) 109, 940, 952, 964
BspPI GGATC 3 cut(s) 54, 299, 575
BspT104I TTCGAA 1 cut(s) 449
BspT107I GGYRCC 3 cut(s) 938, 950, 962
BspTNI GGTCTC 1 cut(s) 108
BsrDI GCAATG 1 cut(s) 769
BsrI ACTGG 5 cut(s) 192, 212, 724, 735, 879
BssECI CCNNGG 6 cut(s) 40, 175, 201, 260, 613, 643
BssMI GATC 5 cut(s) 59, 304, 314, 580, 1018
BssT1I CCWWGG 4 cut(s) 40, 260, 613, 643
Bst4CI ACNGT 2 cut(s) 80, 1026
Bst6I CTCTTC 1 cut(s) 931
BstBI TTCGAA 1 cut(s) 449
BstC8I GCNNGC 1 cut(s) 1058
BstDEI CTNAG 6 cut(s) 372, 478, 678, 822, 828, 999
BstDSI CCRYGG 1 cut(s) 201
BstF5I GGATG 2 cut(s) 147, 265
BstFNI CGCG 1 cut(s) 906
BstHHI GCGC 1 cut(s) 908
BstKTI GATC 5 cut(s) 62, 307, 317, 583, 1021
BstMAI GTCTC 1 cut(s) 108
BstMBI GATC 5 cut(s) 59, 304, 314, 580, 1018
BstMCI CGRYCG 1 cut(s) 1025
BstMWI GCNNNNNNNGC 7 cut(s) 143, 250, 296, 424, 542, 701, 919
BstUI CGCG 1 cut(s) 906
BstV1I GCAGC 7 cut(s) 277, 380, 388, 529, 925, 928, 931
BstV2I GAAGAC 2 cut(s) 967, 1020
BstXI CCANNNNNNTGG 1 cut(s) 614
BsuRI GGCC 5 cut(s) 48, 108, 224, 618, 648
BtgI CCRYGG 1 cut(s) 201
BtsCI GGATG 2 cut(s) 147, 265
BtsI GCAGTG 2 cut(s) 141, 717
BtsIMutI CAGTG 2 cut(s) 141, 717
Cac8I GCNNGC 1 cut(s) 1058
CfoI GCGC 1 cut(s) 908
Cfr13I GGNCC 2 cut(s) 107, 338
CseI GACGC 1 cut(s) 78
Csp6I GTAC 2 cut(s) 867, 1008
CviAII CATG 5 cut(s) 287, 499, 756, 842, 860
CviQI GTAC 2 cut(s) 867, 1008
DdeI CTNAG 6 cut(s) 372, 478, 678, 822, 828, 999
DpnI GATC 5 cut(s) 61, 306, 316, 582, 1020
DpnII GATC 5 cut(s) 59, 304, 314, 580, 1018
DrdI GACNNNNNNGTC 1 cut(s) 122
DseDI GACNNNNNNGTC 1 cut(s) 122
EaeI YGGCCR 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 931
EarI CTCTTC 1 cut(s) 931
EciI GGCGGA 2 cut(s) 124, 453
Ecl136II GAGCTC 1 cut(s) 418
Eco130I CCWWGG 4 cut(s) 40, 260, 613, 643
Eco147I AGGCCT 1 cut(s) 648
Eco24I GRGCYC 1 cut(s) 420
Eco31I GGTCTC 1 cut(s) 108
Eco47I GGWCC 1 cut(s) 338
Eco53kI GAGCTC 1 cut(s) 418
Eco57I CTGAAG 1 cut(s) 857
EcoICRI GAGCTC 1 cut(s) 418
EcoO109I RGGNCCY 1 cut(s) 107
EcoT14I CCWWGG 4 cut(s) 40, 260, 613, 643
EcoT38I GRGCYC 1 cut(s) 420
ErhI CCWWGG 4 cut(s) 40, 260, 613, 643
FaeI CATG 5 cut(s) 290, 502, 759, 845, 863
FalI AAGNNNNNCTT 2 cut(s) 494, 526
FatI CATG 5 cut(s) 286, 498, 755, 841, 859
FauI CCCGC 2 cut(s) 950, 1061
FokI GGATG 2 cut(s) 134, 252
FriOI GRGCYC 1 cut(s) 420
FspBI CTAG 3 cut(s) 279, 473, 525
GlaI GCGC 1 cut(s) 907
GsuI CTGGAG 1 cut(s) 718
HaeIII GGCC 5 cut(s) 48, 108, 224, 618, 648
HapII CCGG 2 cut(s) 66, 127
HgaI GACGC 1 cut(s) 78
HhaI GCGC 1 cut(s) 908
Hin1II CATG 5 cut(s) 290, 502, 759, 845, 863
Hin6I GCGC 1 cut(s) 906
HinP1I GCGC 1 cut(s) 906
HincII GTYRAC 1 cut(s) 556
HindII GTYRAC 1 cut(s) 556
HinfI GANTC 5 cut(s) 386, 446, 476, 728, 856
HpaII CCGG 2 cut(s) 66, 127
HphI GGTGA 2 cut(s) 860, 1001
Hpy166II GTNNAC 2 cut(s) 205, 556
Hpy188I TCNGA 7 cut(s) 179, 385, 439, 481, 744, 958, 1018
Hpy188III TCNNGA 3 cut(s) 167, 217, 473
Hpy8I GTNNAC 2 cut(s) 205, 556
HpyAV CCTTC 3 cut(s) 214, 517, 881
HpyCH4III ACNGT 2 cut(s) 80, 1026
HpyCH4V TGCA 1 cut(s) 981
HpyF10VI GCNNNNNNNGC 7 cut(s) 143, 250, 296, 424, 542, 701, 919
HpyF3I CTNAG 6 cut(s) 372, 478, 678, 822, 828, 999
Hsp92II CATG 5 cut(s) 290, 502, 759, 845, 863
HspAI GCGC 1 cut(s) 906
Kzo9I GATC 5 cut(s) 59, 304, 314, 580, 1018
LmnI GCTCC 2 cut(s) 423, 759
Lsp1109I GCAGC 7 cut(s) 277, 380, 388, 529, 925, 928, 931
LweI GCATC 1 cut(s) 274
MaeI CTAG 3 cut(s) 279, 473, 525
MaeIII GTNAC 3 cut(s) 80, 281, 569
MalI GATC 5 cut(s) 61, 306, 316, 582, 1020
MboI GATC 5 cut(s) 59, 304, 314, 580, 1018
MboII GAAGA 5 cut(s) 222, 502, 918, 967, 1020
MhlI GDGCHC 1 cut(s) 420
MluCI AATT 4 cut(s) 152, 360, 591, 1045
MlyI GAGTC 3 cut(s) 395, 470, 722
MroXI GAANNNNTTC 1 cut(s) 506
MseI TTAA 1 cut(s) 408
MslI CAYNNNNRTG 2 cut(s) 840, 846
MspA1I CMGCKG 2 cut(s) 371, 542
MspI CCGG 2 cut(s) 66, 127
Mva1269I GAATGC 1 cut(s) 981
MvnI CGCG 1 cut(s) 906
MwoI GCNNNNNNNGC 7 cut(s) 143, 250, 296, 424, 542, 701, 919
NdeII GATC 5 cut(s) 59, 304, 314, 580, 1018
NlaIII CATG 5 cut(s) 290, 502, 759, 845, 863
NlaIV GGNNCC 4 cut(s) 109, 940, 952, 964
NmuCI GTSAC 1 cut(s) 80
NspV TTCGAA 1 cut(s) 449
PceI AGGCCT 1 cut(s) 648
PcsI WCGNNNNNNNCGW 1 cut(s) 76
PctI GAATGC 1 cut(s) 981
PdmI GAANNNNTTC 1 cut(s) 506
PfeI GAWTC 2 cut(s) 446, 856
PleI GAGTC 3 cut(s) 394, 470, 722
PpsI GAGTC 3 cut(s) 394, 470, 722
Psp124BI GAGCTC 1 cut(s) 420
PspN4I GGNNCC 4 cut(s) 109, 940, 952, 964
PspPI GGNCC 2 cut(s) 107, 338
PvuII CAGCTG 1 cut(s) 371
RsaI GTAC 2 cut(s) 868, 1009
RsaNI GTAC 2 cut(s) 867, 1008
RseI CAYNNNNRTG 2 cut(s) 840, 846
SacI GAGCTC 1 cut(s) 420
SaqAI TTAA 1 cut(s) 408
Sau3AI GATC 5 cut(s) 59, 304, 314, 580, 1018
Sau96I GGNCC 2 cut(s) 107, 338
SchI GAGTC 3 cut(s) 395, 470, 722
SduI GDGCHC 1 cut(s) 420
SfaNI GCATC 1 cut(s) 274
SfuI TTCGAA 1 cut(s) 449
SinI GGWCC 1 cut(s) 338
SmiMI CAYNNNNRTG 2 cut(s) 840, 846
SmlI CTYRAG 1 cut(s) 690
SmoI CTYRAG 1 cut(s) 690
SpeI ACTAGT 2 cut(s) 278, 524
Sse9I AATT 4 cut(s) 152, 360, 591, 1045
SseBI AGGCCT 1 cut(s) 648
SspMI CTAG 3 cut(s) 279, 473, 525
SstI GAGCTC 1 cut(s) 420
StuI AGGCCT 1 cut(s) 648
StyI CCWWGG 4 cut(s) 40, 260, 613, 643
TaaI ACNGT 2 cut(s) 80, 1026
TaqI TCGA 4 cut(s) 58, 313, 449, 1021
TasI AATT 4 cut(s) 152, 360, 591, 1045
TauI GCSGC 6 cut(s) 48, 368, 539, 542, 707, 710
TfiI GAWTC 2 cut(s) 446, 856
Tru1I TTAA 1 cut(s) 408
Tru9I TTAA 1 cut(s) 408
TscAI CASTG 2 cut(s) 148, 717
TseFI GTSAC 1 cut(s) 80
TseI GCWGC 7 cut(s) 290, 368, 376, 542, 913, 916, 919
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 3 cut(s) 515, 647, 780
TspGWI ACGGA 3 cut(s) 297, 541, 554
TspRI CASTG 2 cut(s) 148, 717
VpaK11BI GGWCC 1 cut(s) 338
XbaI TCTAGA 1 cut(s) 472
XcmI CCANNNNNNNNNTGG 1 cut(s) 199
XmnI GAANNNNTTC 1 cut(s) 506
XspI CTAG 3 cut(s) 279, 473, 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.