FvH4_6g27030
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0008930
Physical Location & Seq
Reverse (-)
20694915 .. 20697313
2399 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g27030.t1

Sequence Viewer

Length: 1101 bp
ATGGGCATGAAGAGCGTCGGAGGAGAAATTGTGCAAGTCCAAGGAGGTCACATTGTTCGATCCACCGGCCGGAAAGACCGCCACAGCAAGGTGTACACCGCAAAAGGCCCCAGAGACCGCCGTGTCCGGCTGTCAGCTCACACCGCCATCCAATTCTACGATGTTCAAGACCGGCTAGGCTACGATCGGCCCAGTAAAGCCGTGGACTGGCTCATCAAGAAGGCCAAAACCGCCATTGACAAGCTTGCAGAGCTTCCACCTTGGCACCCAACTGGAGTTGCTGCTACTGCTACAGAAGGTGAAGCTCCAAATGGGGCTGGAACCAGTGAGATGGTGATCTCAGCTGAGCAATCTGAGTCATCTGGCTACAATTTCCAGCTGCAGAGACAGATTGGGGACAACACAGATCACAATGACTCAAACTTCATCCCTCAATCTCTAGATTCCGACACCATAGCTGATACCATGAAGTCCTTCTTCCCCACAAGCTCAGCTGCCTCAACCATCAATTTCCAAAGCTACCCATCTGACATAATCTCGAGAACAACTAATCTCAACCCCAACCAAGACCTCGGCCTCTCTCTCCACTCCTTCCAAGACCAAGGCCTGATTCACCACACCCAGCAATCCCATCAGGACACCACCCACCACCACAATGATCAGATTCAAACCCTCTTCGCCGTGCCGGCCACGGCAGGGTTCGACTCGTCTACCTATCAGAGGATGGTGGCATGGAGCAGTGACACGAGCAGCCATGAAAACAACAACAGAGGGTTGTTCTTCAACAACATGTCGGCTTTGCCGCATCAGCAACAACAGGCACTGATGGGGCAGCAGCATAGCTCGGCTTTTGCTCAGAGGGGTACCCTTCAGTCCAGTTTCACACCTTCCATTCGTTCTTGGAGTGATGAAATTCAAATGGCTTCACAGAGAACACAGCATCCAATTCACCACTCTTCCATCTTCGGCACCAGGTTCGCCTCTGATGGCCTCCCTGTGTTCTGCATTCCGACCACTCGCATCCACGGCGAGGATGCAGACAATGCCGTCGTTTCGGATCGCCCATCTTCTACTTCCTCTCCCAACTCCAACCACCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCP

Protein Analysis

367

Amino Acids

40.31

Weight (kDa)

6.38

Isoelectric Point (pI)

45.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 23 - 133 1.5e-30 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 122, 1046
Acc65I GGTACC 1 cut(s) 863
AccB1I GGYRCC 3 cut(s) 264, 863, 968
AccI GTMKAC 1 cut(s) 710
AciI CCGC 6 cut(s) 79, 99, 118, 144, 231, 803
AclWI GGATC 2 cut(s) 54, 1065
AcoI YGGCCR 2 cut(s) 67, 687
AcsI RAATTY 1 cut(s) 912
AcuI CTGAAG 1 cut(s) 854
AfaI GTAC 2 cut(s) 95, 865
AfiI CCNNNNNNNGG 6 cut(s) 69, 88, 207, 696, 720, 1030
AflIII ACRYGT 1 cut(s) 789
AgsI TTSAA 4 cut(s) 167, 668, 784, 917
AjnI CCWGG 1 cut(s) 971
AjuI GAANNNNNNNTTGG 2 cut(s) 594, 626
AloI GAACNNNNNNTCC 2 cut(s) 925, 957
Alw26I GTCTC 2 cut(s) 108, 379
AlwI GGATC 2 cut(s) 54, 1065
AlwNI CAGNNNCTG 1 cut(s) 823
Ama87I CYCGRG 1 cut(s) 538
AoxI GGCC 8 cut(s) 67, 106, 188, 222, 574, 604, 687, 988
ApeKI GCWGC 6 cut(s) 281, 379, 494, 750, 832, 835
ApoI RAATTY 1 cut(s) 912
Asp700I GAANNNNTTC 1 cut(s) 473
Asp718I GGTACC 1 cut(s) 863
AspS9I GGNCC 2 cut(s) 107, 189
AsuHPI GGTGA 4 cut(s) 311, 346, 605, 941
AvaI CYCGRG 1 cut(s) 538
BanI GGYRCC 3 cut(s) 264, 863, 968
BauI CACGAG 1 cut(s) 745
BbvI GCAGC 6 cut(s) 268, 366, 481, 762, 844, 847
BceAI ACGGC 6 cut(s) 105, 185, 665, 708, 1031, 1042
BcgI CGANNNNNNTGC 2 cut(s) 958, 992
BciT130I CCWGG 1 cut(s) 973
BclI TGATCA 1 cut(s) 658
BcoDI GTCTC 2 cut(s) 108, 379
BfaI CTAG 2 cut(s) 176, 440
BfmI CTRYAG 2 cut(s) 291, 380
BglI GCCNNNNNGGC 1 cut(s) 686
BisI GCNGC 7 cut(s) 282, 380, 495, 751, 803, 833, 836
BlpI GCTNAGC 2 cut(s) 345, 490
BlsI GCNGC 7 cut(s) 283, 381, 496, 752, 804, 834, 837
Bme1390I CCNGG 1 cut(s) 973
BmeT110I CYCGRG 1 cut(s) 538
BmgT120I GGNCC 2 cut(s) 107, 189
BmiI GGNNCC 5 cut(s) 109, 266, 322, 865, 970
BmrFI CCNGG 1 cut(s) 973
BmrI ACTGGG 1 cut(s) 186
BmsI GCATC 4 cut(s) 814, 949, 1024, 1029
BmuI ACTGGG 1 cut(s) 186
BpmI CTGGAG 1 cut(s) 294
Bpu1102I GCTNAGC 2 cut(s) 345, 490
BsaBI GATNNNNATC 1 cut(s) 335
BsaI GGTCTC 1 cut(s) 108
BsaJI CCNNGG 7 cut(s) 40, 201, 260, 571, 601, 690, 1024
BsaXI ACNNNNNCTCC 4 cut(s) 15, 45, 1063, 1093
Bsc4I CCNNNNNNNGG 6 cut(s) 69, 88, 207, 696, 720, 1030
Bse118I RCCGGY 3 cut(s) 65, 171, 685
Bse1I ACTGG 5 cut(s) 192, 212, 277, 324, 876
Bse8I GATNNNNATC 1 cut(s) 335
BseBI CCWGG 1 cut(s) 973
BseDI CCNNGG 7 cut(s) 40, 201, 260, 571, 601, 690, 1024
BseGI GGATG 6 cut(s) 147, 426, 729, 940, 1020, 1039
BseJI GATNNNNATC 1 cut(s) 335
BseLI CCNNNNNNNGG 6 cut(s) 69, 88, 207, 696, 720, 1030
BseMII CTCAG 5 cut(s) 336, 345, 354, 504, 869
BseNI ACTGG 5 cut(s) 192, 212, 277, 324, 876
BseRI GAGGAG 1 cut(s) 36
BseX3I CGGCCG 1 cut(s) 67
BseXI GCAGC 6 cut(s) 268, 366, 481, 762, 844, 847
BseYI CCCAGC 1 cut(s) 621
Bsh1285I CGRYCG 2 cut(s) 70, 187
BshFI GGCC 8 cut(s) 69, 108, 190, 224, 576, 606, 689, 990
BshNI GGYRCC 3 cut(s) 264, 863, 968
BsiEI CGRYCG 2 cut(s) 70, 187
BsiHKCI CYCGRG 1 cut(s) 538
BsiSI CCGG 5 cut(s) 66, 70, 127, 172, 686
BslFI GGGAC 1 cut(s) 410
BslI CCNNNNNNNGG 6 cut(s) 69, 88, 207, 696, 720, 1030
BsmAI GTCTC 2 cut(s) 108, 379
BsmFI GGGAC 1 cut(s) 410
BsmI GAATGC 1 cut(s) 1005
BsnI GGCC 8 cut(s) 69, 108, 190, 224, 576, 606, 689, 990
Bso31I GGTCTC 1 cut(s) 108
BsoBI CYCGRG 1 cut(s) 538
Bsp1407I TGTACA 1 cut(s) 93
Bsp143I GATC 6 cut(s) 59, 184, 336, 406, 658, 1057
Bsp1720I GCTNAGC 2 cut(s) 345, 490
BspACI CCGC 6 cut(s) 79, 99, 118, 144, 231, 803
BspANI GGCC 8 cut(s) 69, 108, 190, 224, 576, 606, 689, 990
BspCNI CTCAG 5 cut(s) 337, 346, 353, 503, 868
BspLI GGNNCC 5 cut(s) 109, 266, 322, 865, 970
BspMAI CTGCAG 1 cut(s) 384
BspPI GGATC 2 cut(s) 54, 1065
BspQI GCTCTTC 1 cut(s) 5
BspT107I GGYRCC 3 cut(s) 264, 863, 968
BspTNI GGTCTC 1 cut(s) 108
BsrFI RCCGGY 3 cut(s) 65, 171, 685
BsrGI TGTACA 1 cut(s) 93
BsrI ACTGG 5 cut(s) 192, 212, 277, 324, 876
BssAI RCCGGY 3 cut(s) 65, 171, 685
BssECI CCNNGG 7 cut(s) 40, 201, 260, 571, 601, 690, 1024
BssMI GATC 6 cut(s) 59, 184, 336, 406, 658, 1057
BssSI CACGAG 1 cut(s) 745
BssT1I CCWWGG 3 cut(s) 40, 260, 601
Bst2BI CACGAG 1 cut(s) 745
Bst2UI CCWGG 1 cut(s) 973
Bst6I CTCTTC 3 cut(s) 5, 680, 961
BstAPI GCANNNNNTGC 1 cut(s) 1043
BstAUI TGTACA 1 cut(s) 93
BstC8I GCNNGC 2 cut(s) 246, 687
BstDEI CTNAG 5 cut(s) 340, 345, 354, 490, 855
BstDSI CCRYGG 3 cut(s) 201, 690, 1024
BstENI CCTNNNNNAGG 1 cut(s) 718
BstF5I GGATG 6 cut(s) 147, 426, 729, 940, 1020, 1039
BstKTI GATC 6 cut(s) 62, 187, 339, 409, 661, 1060
BstMAI GTCTC 2 cut(s) 108, 379
BstMBI GATC 6 cut(s) 59, 184, 336, 406, 658, 1057
BstMCI CGRYCG 2 cut(s) 70, 187
BstMWI GCNNNNNNNGC 9 cut(s) 12, 143, 230, 250, 287, 686, 808, 1026, 1043
BstNI CCWGG 1 cut(s) 973
BstNSI RCATGY 1 cut(s) 793
BstSCI CCNGG 1 cut(s) 971
BstSFI CTRYAG 2 cut(s) 291, 380
BstV1I GCAGC 6 cut(s) 268, 366, 481, 762, 844, 847
BstXI CCANNNNNNTGG 1 cut(s) 331
BstZI CGGCCG 1 cut(s) 67
BsuRI GGCC 8 cut(s) 69, 108, 190, 224, 576, 606, 689, 990
BtgI CCRYGG 3 cut(s) 201, 690, 1024
BtsCI GGATG 6 cut(s) 147, 426, 729, 940, 1020, 1039
BtsI GCAGTG 1 cut(s) 745
BtsIMutI CAGTG 4 cut(s) 331, 745, 821, 1096
Cac8I GCNNGC 2 cut(s) 246, 687
CaiI CAGNNNCTG 1 cut(s) 823
Cfr10I RCCGGY 3 cut(s) 65, 171, 685
Cfr13I GGNCC 2 cut(s) 107, 189
CseI GACGC 1 cut(s) 4
CsiI ACCWGGT 1 cut(s) 971
Csp6I GTAC 2 cut(s) 94, 864
CviAII CATG 5 cut(s) 7, 466, 732, 755, 790
CviQI GTAC 2 cut(s) 94, 864
DdeI CTNAG 5 cut(s) 340, 345, 354, 490, 855
DpnI GATC 6 cut(s) 61, 186, 338, 408, 660, 1059
DpnII GATC 6 cut(s) 59, 184, 336, 406, 658, 1057
DrdI GACNNNNNNGTC 2 cut(s) 122, 1046
DseDI GACNNNNNNGTC 2 cut(s) 122, 1046
EaeI YGGCCR 2 cut(s) 67, 687
EagI CGGCCG 1 cut(s) 67
Eam1104I CTCTTC 3 cut(s) 5, 680, 961
EarI CTCTTC 3 cut(s) 5, 680, 961
EclXI CGGCCG 1 cut(s) 67
Eco130I CCWWGG 3 cut(s) 40, 260, 601
Eco147I AGGCCT 1 cut(s) 606
Eco31I GGTCTC 1 cut(s) 108
Eco52I CGGCCG 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 854
Eco88I CYCGRG 1 cut(s) 538
EcoNI CCTNNNNNAGG 1 cut(s) 718
EcoO109I RGGNCCY 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 971
EcoT14I CCWWGG 3 cut(s) 40, 260, 601
ErhI CCWWGG 3 cut(s) 40, 260, 601
FaeI CATG 5 cut(s) 10, 469, 735, 758, 793
FaiI YATR 8 cut(s) 8, 455, 467, 533, 733, 756, 791, 840
FalI AAGNNNNNCTT 2 cut(s) 461, 493
FaqI GGGAC 1 cut(s) 410
FatI CATG 5 cut(s) 6, 465, 731, 754, 789
FbaI TGATCA 1 cut(s) 658
FblI GTMKAC 1 cut(s) 710
Fnu4HI GCNGC 7 cut(s) 282, 380, 495, 751, 803, 833, 836
FokI GGATG 6 cut(s) 134, 413, 736, 927, 1007, 1046
Fsp4HI GCNGC 7 cut(s) 282, 380, 495, 751, 803, 833, 836
FspBI CTAG 2 cut(s) 176, 440
GluI GCNGC 7 cut(s) 282, 380, 495, 751, 803, 833, 836
GsaI CCCAGC 1 cut(s) 625
GsuI CTGGAG 1 cut(s) 294
HaeIII GGCC 8 cut(s) 69, 108, 190, 224, 576, 606, 689, 990
HapII CCGG 5 cut(s) 66, 70, 127, 172, 686
HgaI GACGC 1 cut(s) 4
Hin1II CATG 5 cut(s) 10, 469, 735, 758, 793
HindIII AAGCTT 1 cut(s) 242
HinfI GANTC 6 cut(s) 356, 416, 443, 610, 664, 704
HpaII CCGG 5 cut(s) 66, 70, 127, 172, 686
HphI GGTGA 4 cut(s) 311, 346, 605, 941
Hpy166II GTNNAC 4 cut(s) 94, 96, 205, 711
Hpy188III TCNNGA 6 cut(s) 167, 217, 440, 538, 540, 635
Hpy8I GTNNAC 4 cut(s) 94, 96, 205, 711
Hpy99I CGWCG 2 cut(s) 20, 1052
HpyAV CCTTC 6 cut(s) 214, 290, 484, 601, 878, 897
HpyCH4V TGCA 5 cut(s) 34, 248, 382, 1005, 1037
HpyF10VI GCNNNNNNNGC 9 cut(s) 12, 143, 230, 250, 287, 686, 808, 1026, 1043
HpyF3I CTNAG 5 cut(s) 340, 345, 354, 490, 855
Hsp92II CATG 5 cut(s) 10, 469, 735, 758, 793
KpnI GGTACC 1 cut(s) 867
KroI GCCGGC 1 cut(s) 685
KroNI GCCGGC 1 cut(s) 687
Ksp22I TGATCA 1 cut(s) 658
Kzo9I GATC 6 cut(s) 59, 184, 336, 406, 658, 1057
LguI GCTCTTC 1 cut(s) 5
LmnI GCTCC 2 cut(s) 310, 735
Lsp1109I GCAGC 6 cut(s) 268, 366, 481, 762, 844, 847
LweI GCATC 4 cut(s) 814, 949, 1024, 1029
MabI ACCWGGT 1 cut(s) 971
MaeI CTAG 2 cut(s) 176, 440
MaeIII GTNAC 2 cut(s) 47, 740
MalI GATC 6 cut(s) 61, 186, 338, 408, 660, 1059
MboI GATC 6 cut(s) 59, 184, 336, 406, 658, 1057
MboII GAAGA 7 cut(s) 22, 469, 667, 772, 948, 955, 1059
MluCI AATT 6 cut(s) 27, 152, 370, 508, 912, 945
MlyI GAGTC 3 cut(s) 365, 410, 698
MmeI TCCRAC 2 cut(s) 471, 1034
MroNI GCCGGC 1 cut(s) 685
MroXI GAANNNNTTC 1 cut(s) 473
MslI CAYNNNNRTG 1 cut(s) 654
MspA1I CMGCKG 3 cut(s) 344, 379, 494
MspI CCGG 5 cut(s) 66, 70, 127, 172, 686
MspR9I CCNGG 1 cut(s) 973
Mva1269I GAATGC 1 cut(s) 1005
MvaI CCWGG 1 cut(s) 973
MwoI GCNNNNNNNGC 9 cut(s) 12, 143, 230, 250, 287, 686, 808, 1026, 1043
NaeI GCCGGC 1 cut(s) 687
NdeII GATC 6 cut(s) 59, 184, 336, 406, 658, 1057
NgoMIV GCCGGC 1 cut(s) 685
NlaIII CATG 5 cut(s) 10, 469, 735, 758, 793
NlaIV GGNNCC 5 cut(s) 109, 266, 322, 865, 970
NmeAIII GCCGAG 2 cut(s) 552, 824
NmuCI GTSAC 2 cut(s) 47, 740
NspI RCATGY 1 cut(s) 793
PaeR7I CTCGAG 1 cut(s) 538
PceI AGGCCT 1 cut(s) 606
PciI ACATGT 1 cut(s) 789
PciSI GCTCTTC 1 cut(s) 5
PctI GAATGC 1 cut(s) 1005
PdiI GCCGGC 1 cut(s) 687
PdmI GAANNNNTTC 1 cut(s) 473
PfeI GAWTC 3 cut(s) 443, 610, 664
PkrI GCNGC 7 cut(s) 283, 381, 496, 752, 804, 834, 837
Ple19I CGATCG 1 cut(s) 187
PleI GAGTC 3 cut(s) 364, 410, 698
PpsI GAGTC 3 cut(s) 364, 410, 698
PscI ACATGT 1 cut(s) 789
Psp6I CCWGG 1 cut(s) 971
PspFI CCCAGC 1 cut(s) 621
PspGI CCWGG 1 cut(s) 971
PspN4I GGNNCC 5 cut(s) 109, 266, 322, 865, 970
PspPI GGNCC 2 cut(s) 107, 189
PstI CTGCAG 1 cut(s) 384
PstNI CAGNNNCTG 1 cut(s) 823
PvuI CGATCG 1 cut(s) 187
PvuII CAGCTG 3 cut(s) 344, 379, 494
RsaI GTAC 2 cut(s) 95, 865
RsaNI GTAC 2 cut(s) 94, 864
RseI CAYNNNNRTG 1 cut(s) 654
SapI GCTCTTC 1 cut(s) 5
SatI GCNGC 7 cut(s) 282, 380, 495, 751, 803, 833, 836
Sau3AI GATC 6 cut(s) 59, 184, 336, 406, 658, 1057
Sau96I GGNCC 2 cut(s) 107, 189
SchI GAGTC 3 cut(s) 365, 410, 698
ScrFI CCNGG 1 cut(s) 973
SexAI ACCWGGT 1 cut(s) 971
SfaNI GCATC 4 cut(s) 814, 949, 1024, 1029
SfcI CTRYAG 2 cut(s) 291, 380
Sfr274I CTCGAG 1 cut(s) 538
SlaI CTCGAG 1 cut(s) 538
SmiMI CAYNNNNRTG 1 cut(s) 654
SmlI CTYRAG 1 cut(s) 538
SmoI CTYRAG 1 cut(s) 538
Sse9I AATT 6 cut(s) 27, 152, 370, 508, 912, 945
SseBI AGGCCT 1 cut(s) 606
SsiI CCGC 6 cut(s) 79, 99, 118, 144, 231, 803
SspMI CTAG 2 cut(s) 176, 440
StuI AGGCCT 1 cut(s) 606
StyD4I CCNGG 1 cut(s) 971
StyI CCWWGG 3 cut(s) 40, 260, 601
TaqI TCGA 3 cut(s) 58, 539, 702
TasI AATT 6 cut(s) 27, 152, 370, 508, 912, 945
TatI WGTACW 1 cut(s) 93
TauI GCSGC 1 cut(s) 805
TfiI GAWTC 3 cut(s) 443, 610, 664
TscAI CASTG 3 cut(s) 331, 745, 828
TseFI GTSAC 2 cut(s) 47, 740
TseI GCWGC 6 cut(s) 281, 379, 494, 750, 832, 835
Tsp45I GTSAC 2 cut(s) 47, 740
TspDTI ATGAA 5 cut(s) 23, 415, 482, 771, 924
TspRI CASTG 3 cut(s) 331, 745, 828
XagI CCTNNNNNAGG 1 cut(s) 718
XapI RAATTY 1 cut(s) 912
XbaI TCTAGA 1 cut(s) 439
XceI RCATGY 1 cut(s) 793
XcmI CCANNNNNNNNNTGG 1 cut(s) 199
XhoI CTCGAG 1 cut(s) 538
XmiI GTMKAC 1 cut(s) 710
XmnI GAANNNNTTC 1 cut(s) 473
XspI CTAG 2 cut(s) 176, 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.