Rorug02G0282400
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0008930
Physical Location & Seq
Forward (+)
30614927 .. 30617190
2264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0282400.1

Sequence Viewer

Length: 918 bp
ATGATTGAAGAAGTGAAGAGCATCTTCATGCAGCTGTATACTCATTATGGAAATGAAGATCCAGTGGCGGCAGAGGCTTCATTGCATGCTACTCAGCCAAGAATGGAGGATTCAAGTGCTGCACAAGGTGTTGAGGACAGCCATGCGCAGAATCTGCGTCAATTCAAGTTGCTGAAGCAAGAAAACGATATCGTCGAGATAAAAAATGAGGTGGACAAGTACTTACTAGAAGCTTTAGAAGATCCGTCCAACTACAAGTTTGATGTTCTTGCCTGGTGGAAGGAGAATGCTCCGAGGTACCCCATACTTTCCCAAGTTGCCAAAGATGTCTTTGCTGTCCCTGCATCAATAGTTGCTAGTGAATCTGCGTTTAGCCTCGGCAAAAGGGTCGTTGACCCTTTTAGGTCATTTCTCACTCCAAGAATGGTTGAAGCTTTGGTATGCATGAGTGACTGGTTAAGGGTTGCAGGCTTTAATGCTTATAAGGAGCCTACTAAAGATGAATTGGATCTATACAATGAGCTGGAAAAGATGGAGAATGGTCACGAAATCCATATCCACTACACATGCACACATTTTCCATATATCAAGGAGGACACTGTGAGTCTTTGGCTGAATGATGTTACACAACTTTTCTATGAGATGGAAGATGTGTTGGATGAGAACACTGAAGTTCAAAAAGACGAATGGAAACAAGAAAATGGAGGTGAAGATGGCAATATTGTTGCCAAGAAGAAGGGTCCCCTTATGATCCCTATGATAGGGATGCGAGGAATTGGAAAGACAACTCTTTCCAAACTAGTCTATAATGATGAAAAGGTCAAGGCTCATTTTGACAAGAGAGTATGGGTCTCTGTCTCAGACCCTCTTGATGAGATCAAAGTTGCCAAAGCCATCATTGAAGGTCTTGGACGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCP

Protein Analysis

305

Amino Acids

34.89

Weight (kDa)

4.91

Isoelectric Point (pI)

39.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 70 - 153 3.8e-27 hAT family C-terminal dimerisation region
NB-ARC PF00931 244 - 303 2e-11 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 483
Acc16I TGCGCA 1 cut(s) 147
Acc65I GGTACC 1 cut(s) 297
AccB1I GGYRCC 1 cut(s) 297
AccI GTMKAC 1 cut(s) 38
AciI CCGC 1 cut(s) 68
AclWI GGATC 4 cut(s) 53, 236, 516, 745
AcuI CTGAAG 2 cut(s) 194, 690
AdeI CACNNNGTG 1 cut(s) 128
AfaI GTAC 2 cut(s) 221, 299
AfiI CCNNNNNNNGG 1 cut(s) 761
AgsI TTSAA 6 cut(s) 8, 114, 166, 431, 677, 902
AhlI ACTAGT 1 cut(s) 799
AjnI CCWGG 1 cut(s) 272
AluBI AGCT 4 cut(s) 34, 233, 434, 523
AluI AGCT 4 cut(s) 34, 233, 434, 523
Alw26I GTCTC 2 cut(s) 856, 862
AlwI GGATC 4 cut(s) 53, 236, 516, 745
AlwNI CAGNNNCTG 1 cut(s) 154
ApeKI GCWGC 2 cut(s) 31, 119
Asp718I GGTACC 1 cut(s) 297
AspLEI GCGC 1 cut(s) 148
AspS9I GGNCC 1 cut(s) 740
AsuHPI GGTGA 1 cut(s) 719
AvaII GGWCC 1 cut(s) 740
BanI GGYRCC 1 cut(s) 297
BbvI GCAGC 2 cut(s) 43, 106
BccI CCATC 4 cut(s) 526, 637, 707, 902
BcgI CGANNNNNNTGC 2 cut(s) 370, 404
BciT130I CCWGG 1 cut(s) 274
BcoDI GTCTC 2 cut(s) 856, 862
BcuI ACTAGT 1 cut(s) 799
BfaI CTAG 3 cut(s) 227, 357, 800
BisI GCNGC 3 cut(s) 32, 69, 120
BlsI GCNGC 3 cut(s) 33, 70, 121
BmcAI AGTACT 1 cut(s) 221
Bme1390I CCNGG 1 cut(s) 274
Bme18I GGWCC 1 cut(s) 740
BmgT120I GGNCC 1 cut(s) 740
BmiI GGNNCC 4 cut(s) 299, 489, 741, 742
BmrFI CCNGG 1 cut(s) 274
BmsI GCATC 3 cut(s) 30, 353, 756
BsaI GGTCTC 1 cut(s) 856
BsaJI CCNNGG 2 cut(s) 293, 376
Bsc4I CCNNNNNNNGG 1 cut(s) 761
Bse1I ACTGG 2 cut(s) 62, 458
Bse3DI GCAATG 1 cut(s) 80
BseBI CCWGG 1 cut(s) 274
BseDI CCNNGG 2 cut(s) 293, 376
BseGI GGATG 2 cut(s) 664, 771
BseLI CCNNNNNNNGG 1 cut(s) 761
BseMI GCAATG 1 cut(s) 80
BseMII CTCAG 2 cut(s) 107, 873
BseNI ACTGG 2 cut(s) 62, 458
BseXI GCAGC 2 cut(s) 43, 106
BsgI GTGCAG 1 cut(s) 105
BshNI GGYRCC 1 cut(s) 297
BslFI GGGAC 2 cut(s) 323, 726
BslI CCNNNNNNNGG 1 cut(s) 761
BsmAI GTCTC 2 cut(s) 856, 862
BsmFI GGGAC 2 cut(s) 323, 726
BsmI GAATGC 1 cut(s) 292
Bso31I GGTCTC 1 cut(s) 856
Bsp143I GATC 5 cut(s) 58, 241, 508, 750, 876
BspACI CCGC 1 cut(s) 68
BspCNI CTCAG 2 cut(s) 106, 872
BspLI GGNNCC 4 cut(s) 299, 489, 741, 742
BspPI GGATC 4 cut(s) 53, 236, 516, 745
BspQI GCTCTTC 1 cut(s) 11
BspT107I GGYRCC 1 cut(s) 297
BspTNI GGTCTC 1 cut(s) 856
BsrDI GCAATG 1 cut(s) 80
BsrI ACTGG 2 cut(s) 62, 458
BssECI CCNNGG 2 cut(s) 293, 376
BssMI GATC 5 cut(s) 58, 241, 508, 750, 876
BssNAI GTATAC 1 cut(s) 39
Bst1107I GTATAC 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 274
Bst4CI ACNGT 2 cut(s) 601, 915
Bst6I CTCTTC 1 cut(s) 11
BstAPI GCANNNNNTGC 1 cut(s) 154
BstC8I GCNNGC 2 cut(s) 87, 469
BstDEI CTNAG 2 cut(s) 93, 859
BstENI CCTNNNNNAGG 1 cut(s) 759
BstF5I GGATG 2 cut(s) 664, 771
BstHHI GCGC 1 cut(s) 148
BstKTI GATC 5 cut(s) 61, 244, 511, 753, 879
BstMAI GTCTC 2 cut(s) 856, 862
BstMBI GATC 5 cut(s) 58, 241, 508, 750, 876
BstMWI GCNNNNNNNGC 3 cut(s) 74, 154, 341
BstNI CCWGG 1 cut(s) 274
BstNSI RCATGY 2 cut(s) 89, 570
BstSCI CCNGG 1 cut(s) 272
BstV1I GCAGC 2 cut(s) 43, 106
BstX2I RGATCY 3 cut(s) 58, 241, 508
BstYI RGATCY 3 cut(s) 58, 241, 508
BstZ17I GTATAC 1 cut(s) 39
BtsCI GGATG 2 cut(s) 664, 771
BtsIMutI CAGTG 3 cut(s) 69, 597, 666
Cac8I GCNNGC 2 cut(s) 87, 469
CaiI CAGNNNCTG 1 cut(s) 154
CfoI GCGC 1 cut(s) 148
Cfr13I GGNCC 1 cut(s) 740
CseI GACGC 1 cut(s) 146
Csp6I GTAC 2 cut(s) 220, 298
CviAII CATG 5 cut(s) 28, 86, 143, 445, 567
CviQI GTAC 2 cut(s) 220, 298
DdeI CTNAG 2 cut(s) 93, 859
DpnI GATC 5 cut(s) 60, 243, 510, 752, 878
DpnII GATC 5 cut(s) 58, 241, 508, 750, 876
DraIII CACNNNGTG 1 cut(s) 128
Eam1104I CTCTTC 1 cut(s) 11
EarI CTCTTC 1 cut(s) 11
Eco31I GGTCTC 1 cut(s) 856
Eco32I GATATC 1 cut(s) 190
Eco47I GGWCC 1 cut(s) 740
Eco57I CTGAAG 2 cut(s) 194, 690
EcoNI CCTNNNNNAGG 1 cut(s) 759
EcoO109I RGGNCCY 1 cut(s) 740
EcoRII CCWGG 1 cut(s) 272
EcoRV GATATC 1 cut(s) 190
EcoT22I ATGCAT 1 cut(s) 446
FaeI CATG 5 cut(s) 31, 89, 146, 448, 570
FalI AAGNNNNNCTT 2 cut(s) 8, 40
FaqI GGGAC 2 cut(s) 323, 726
FatI CATG 5 cut(s) 27, 85, 142, 444, 566
FblI GTMKAC 1 cut(s) 38
Fnu4HI GCNGC 3 cut(s) 32, 69, 120
FokI GGATG 2 cut(s) 671, 778
Fsp4HI GCNGC 3 cut(s) 32, 69, 120
FspBI CTAG 3 cut(s) 227, 357, 800
FspI TGCGCA 1 cut(s) 147
GlaI GCGC 1 cut(s) 147
GluI GCNGC 3 cut(s) 32, 69, 120
HgaI GACGC 1 cut(s) 146
HhaI GCGC 1 cut(s) 148
Hin1II CATG 5 cut(s) 31, 89, 146, 448, 570
Hin6I GCGC 1 cut(s) 146
HinP1I GCGC 1 cut(s) 146
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HindIII AAGCTT 2 cut(s) 231, 432
HinfI GANTC 4 cut(s) 110, 151, 362, 604
HphI GGTGA 1 cut(s) 719
Hpy166II GTNNAC 3 cut(s) 39, 214, 394
Hpy188I TCNGA 2 cut(s) 294, 862
Hpy188III TCNNGA 3 cut(s) 196, 545, 869
Hpy8I GTNNAC 3 cut(s) 39, 214, 394
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 3 cut(s) 274, 730, 896
HpyCH4III ACNGT 2 cut(s) 601, 915
HpyCH4V TGCA 7 cut(s) 31, 85, 122, 344, 444, 467, 570
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 154, 341
HpyF3I CTNAG 2 cut(s) 93, 859
Hsp92II CATG 5 cut(s) 31, 89, 146, 448, 570
HspAI GCGC 1 cut(s) 146
KflI GGGWCCC 1 cut(s) 740
KpnI GGTACC 1 cut(s) 301
Kzo9I GATC 5 cut(s) 58, 241, 508, 750, 876
LguI GCTCTTC 1 cut(s) 11
LmnI GCTCC 2 cut(s) 295, 487
LpnPI CCDG 7 cut(s) 75, 259, 286, 354, 439, 453, 509
Lsp1109I GCAGC 2 cut(s) 43, 106
LweI GCATC 3 cut(s) 30, 353, 756
MaeI CTAG 3 cut(s) 227, 357, 800
MaeIII GTNAC 3 cut(s) 449, 542, 622
MalI GATC 5 cut(s) 60, 243, 510, 752, 878
MboI GATC 5 cut(s) 58, 241, 508, 750, 876
MboII GAAGA 8 cut(s) 16, 20, 28, 68, 251, 659, 722, 745
MflI RGATCY 3 cut(s) 58, 241, 508
MluCI AATT 3 cut(s) 161, 503, 774
MlyI GAGTC 1 cut(s) 613
MmeI TCCRAC 2 cut(s) 273, 636
Mph1103I ATGCAT 1 cut(s) 446
MseI TTAA 2 cut(s) 458, 474
MslI CAYNNNNRTG 1 cut(s) 26
MspA1I CMGCKG 1 cut(s) 34
MspR9I CCNGG 1 cut(s) 274
Mva1269I GAATGC 1 cut(s) 292
MvaI CCWGG 1 cut(s) 274
MwoI GCNNNNNNNGC 3 cut(s) 74, 154, 341
NdeII GATC 5 cut(s) 58, 241, 508, 750, 876
NlaIII CATG 5 cut(s) 31, 89, 146, 448, 570
NlaIV GGNNCC 4 cut(s) 299, 489, 741, 742
NmeAIII GCCGAG 1 cut(s) 357
NmuCI GTSAC 2 cut(s) 449, 542
NsbI TGCGCA 1 cut(s) 147
NsiI ATGCAT 1 cut(s) 446
NspI RCATGY 2 cut(s) 89, 570
PaeI GCATGC 1 cut(s) 89
PciSI GCTCTTC 1 cut(s) 11
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PctI GAATGC 1 cut(s) 292
PfeI GAWTC 3 cut(s) 110, 151, 362
PkrI GCNGC 3 cut(s) 33, 70, 121
PleI GAGTC 1 cut(s) 612
PpsI GAGTC 1 cut(s) 612
PpuMI RGGWCCY 1 cut(s) 740
PsiI TTATAA 1 cut(s) 483
Psp5II RGGWCCY 1 cut(s) 740
Psp6I CCWGG 1 cut(s) 272
PspGI CCWGG 1 cut(s) 272
PspN4I GGNNCC 4 cut(s) 299, 489, 741, 742
PspPI GGNCC 1 cut(s) 740
PspPPI RGGWCCY 1 cut(s) 740
PstNI CAGNNNCTG 1 cut(s) 154
PsuI RGATCY 3 cut(s) 58, 241, 508
PvuII CAGCTG 1 cut(s) 34
RsaI GTAC 2 cut(s) 221, 299
RsaNI GTAC 2 cut(s) 220, 298
RseI CAYNNNNRTG 1 cut(s) 26
SapI GCTCTTC 1 cut(s) 11
SaqAI TTAA 2 cut(s) 458, 474
SatI GCNGC 3 cut(s) 32, 69, 120
Sau3AI GATC 5 cut(s) 58, 241, 508, 750, 876
Sau96I GGNCC 1 cut(s) 740
ScaI AGTACT 1 cut(s) 221
SchI GAGTC 1 cut(s) 613
ScrFI CCNGG 1 cut(s) 274
SfaNI GCATC 3 cut(s) 30, 353, 756
SinI GGWCC 1 cut(s) 740
SmiMI CAYNNNNRTG 1 cut(s) 26
SpeI ACTAGT 1 cut(s) 799
SphI GCATGC 1 cut(s) 89
Sse9I AATT 3 cut(s) 161, 503, 774
SsiI CCGC 1 cut(s) 68
SspI AATATT 1 cut(s) 721
SspMI CTAG 3 cut(s) 227, 357, 800
StyD4I CCNGG 1 cut(s) 272
TaaI ACNGT 2 cut(s) 601, 915
TaqI TCGA 1 cut(s) 195
TasI AATT 3 cut(s) 161, 503, 774
TatI WGTACW 1 cut(s) 219
TauI GCSGC 1 cut(s) 71
TfiI GAWTC 3 cut(s) 110, 151, 362
Tru1I TTAA 2 cut(s) 458, 474
Tru9I TTAA 2 cut(s) 458, 474
TscAI CASTG 3 cut(s) 69, 604, 673
TseFI GTSAC 2 cut(s) 449, 542
TseI GCWGC 2 cut(s) 31, 119
Tsp45I GTSAC 2 cut(s) 449, 542
TspDTI ATGAA 5 cut(s) 16, 69, 69, 516, 828
TspGWI ACGGA 1 cut(s) 234
TspRI CASTG 3 cut(s) 69, 604, 673
VpaK11BI GGWCC 1 cut(s) 740
XagI CCTNNNNNAGG 1 cut(s) 759
XceI RCATGY 2 cut(s) 89, 570
XmiI GTMKAC 1 cut(s) 38
XspI CTAG 3 cut(s) 227, 357, 800
ZrmI AGTACT 1 cut(s) 221
Zsp2I ATGCAT 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.