transcription factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G31070 |
| fragaria_vesca | FvH4_6g27030 |
| malus_domestica | MD09G1232700.v1.1 MD17G1233500.v1.1 |
| prunus_persica | Prupe.3G124900_v2.0.a1 Prupe.3G124900_v2.0.a1 Prupe.3G124900_v2.0.a1 |
| pyrus_communis | pycom09g15910 pycom17g23660 |
| rosa_chinensis | RchiOBHm_Chr2g0128901 |
| rosa_laevigata | RLG00000019040 RLG00000027864 |
| rosa_multiflora | Rmu_sc0001643.1_g000009 |
| rosa_roxburghii | Rroxscaffold_2G00115090 |
| rosa_rugosa | Rorug02G0282400 Rorug02G0282500 Rorug02G0282600 |
| rosa_samantha | Rh2AG335000 Rh2BG343100 Rh2CG321900 Rh2DG359500 |
| rosa_wichuraiana | Rw0G015460 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 978 |
| Acc16I | TGCGCA | 1 cut(s) | 1550 |
| Acc65I | GGTACC | 1 cut(s) | 857 |
| AccB1I | GGYRCC | 2 cut(s) | 264, 857 |
| AccII | CGCG | 1 cut(s) | 123 |
| AclWI | GGATC | 3 cut(s) | 54, 997, 1488 |
| AcoI | YGGCCR | 6 cut(s) | 67, 684, 690, 1261, 1521, 1542 |
| AcsI | RAATTY | 3 cut(s) | 906, 1473, 1491 |
| AcuI | CTGAAG | 1 cut(s) | 848 |
| AfaI | GTAC | 4 cut(s) | 859, 1063, 1129, 1599 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 69, 88, 207, 693, 1323, 1324, 1387 |
| AgsI | TTSAA | 7 cut(s) | 167, 665, 772, 911, 1116, 1333, 1387 |
| AjiI | CACGTC | 1 cut(s) | 1411 |
| AjnI | CCWGG | 2 cut(s) | 110, 1236 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 594, 626 |
| Alw21I | GWGCWC | 3 cut(s) | 827, 1176, 1560 |
| Alw26I | GTCTC | 3 cut(s) | 379, 1081, 1391 |
| AlwI | GGATC | 3 cut(s) | 54, 997, 1488 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1483 |
| ApoI | RAATTY | 3 cut(s) | 906, 1473, 1491 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 473 |
| Asp718I | GGTACC | 1 cut(s) | 857 |
| AspLEI | GCGC | 1 cut(s) | 1551 |
| AspS9I | GGNCC | 7 cut(s) | 107, 115, 189, 1240, 1405, 1424, 1588 |
| AsuC2I | CCSGG | 1 cut(s) | 694 |
| AsuHPI | GGTGA | 3 cut(s) | 346, 605, 638 |
| AsuII | TTCGAA | 1 cut(s) | 1345 |
| AvaII | GGWCC | 4 cut(s) | 115, 1240, 1405, 1424 |
| BalI | TGGCCA | 1 cut(s) | 1544 |
| BanI | GGYRCC | 2 cut(s) | 264, 857 |
| BanII | GRGCYC | 2 cut(s) | 827, 1176 |
| BbsI | GAAGAC | 1 cut(s) | 760 |
| Bbv12I | GWGCWC | 3 cut(s) | 827, 1176, 1560 |
| BccI | CCATC | 9 cut(s) | 155, 512, 532, 715, 802, 889, 1004, 1180, 1463 |
| BceAI | ACGGC | 3 cut(s) | 185, 705, 1508 |
| BcgI | CGANNNNNNTGC | 5 cut(s) | 689, 723, 1476, 1510, 1595 |
| BciT130I | CCWGG | 2 cut(s) | 112, 1238 |
| BcnI | CCSGG | 1 cut(s) | 694 |
| BcoDI | GTCTC | 3 cut(s) | 379, 1081, 1391 |
| BfaI | CTAG | 1 cut(s) | 1154 |
| BfmI | CTRYAG | 2 cut(s) | 380, 831 |
| BlpI | GCTNAGC | 2 cut(s) | 345, 490 |
| Bme1390I | CCNGG | 3 cut(s) | 112, 694, 1238 |
| Bme18I | GGWCC | 4 cut(s) | 115, 1240, 1405, 1424 |
| BmgBI | CACGTC | 1 cut(s) | 1411 |
| BmgT120I | GGNCC | 7 cut(s) | 107, 115, 189, 1240, 1405, 1424, 1588 |
| BmiI | GGNNCC | 6 cut(s) | 109, 116, 266, 322, 859, 1242 |
| BmrFI | CCNGG | 3 cut(s) | 112, 694, 1238 |
| BmrI | ACTGGG | 3 cut(s) | 186, 935, 1078 |
| BmsI | GCATC | 3 cut(s) | 802, 1219, 1219 |
| BmuI | ACTGGG | 3 cut(s) | 186, 935, 1078 |
| BpiI | GAAGAC | 1 cut(s) | 760 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 345, 490 |
| Bpu14I | TTCGAA | 1 cut(s) | 1345 |
| BpuEI | CTTGAG | 1 cut(s) | 523 |
| BpuMI | CCSGG | 1 cut(s) | 694 |
| Bsa29I | ATCGAT | 1 cut(s) | 884 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 15, 45, 995, 1025 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 69, 88, 207, 693, 1323, 1324, 1387 |
| Bse118I | RCCGGY | 5 cut(s) | 65, 171, 186, 682, 781 |
| Bse1I | ACTGG | 6 cut(s) | 192, 277, 324, 870, 941, 1073 |
| Bse3DI | GCAATG | 1 cut(s) | 1558 |
| BseBI | CCWGG | 2 cut(s) | 112, 1238 |
| BseCI | ATCGAT | 1 cut(s) | 884 |
| BseGI | GGATG | 3 cut(s) | 147, 426, 726 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 69, 88, 207, 693, 1323, 1324, 1387 |
| BseMI | GCAATG | 1 cut(s) | 1558 |
| BseMII | CTCAG | 7 cut(s) | 336, 345, 354, 504, 863, 1289, 1317 |
| BseNI | ACTGG | 6 cut(s) | 192, 277, 324, 870, 941, 1073 |
| BseRI | GAGGAG | 3 cut(s) | 36, 694, 1211 |
| BseX3I | CGGCCG | 3 cut(s) | 67, 690, 1261 |
| BseYI | CCCAGC | 2 cut(s) | 175, 621 |
| Bsh1236I | CGCG | 1 cut(s) | 123 |
| Bsh1285I | CGRYCG | 4 cut(s) | 70, 187, 693, 1264 |
| BshNI | GGYRCC | 2 cut(s) | 264, 857 |
| BshVI | ATCGAT | 1 cut(s) | 884 |
| BsiEI | CGRYCG | 4 cut(s) | 70, 187, 693, 1264 |
| BsiHKAI | GWGCWC | 3 cut(s) | 827, 1176, 1560 |
| BsiSI | CCGG | 7 cut(s) | 66, 70, 172, 187, 683, 693, 782 |
| BslFI | GGGAC | 2 cut(s) | 128, 410 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 69, 88, 207, 693, 1323, 1324, 1387 |
| BsmAI | GTCTC | 3 cut(s) | 379, 1081, 1391 |
| BsmBI | CGTCTC | 1 cut(s) | 1391 |
| BsmFI | GGGAC | 2 cut(s) | 128, 410 |
| BsmI | GAATGC | 1 cut(s) | 1127 |
| Bsp119I | TTCGAA | 1 cut(s) | 1345 |
| Bsp1286I | GDGCHC | 3 cut(s) | 827, 1176, 1560 |
| Bsp143I | GATC | 8 cut(s) | 59, 336, 406, 655, 989, 1167, 1480, 1606 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 345, 490 |
| Bsp19I | CCATGG | 1 cut(s) | 260 |
| BspCNI | CTCAG | 7 cut(s) | 337, 346, 353, 503, 862, 1288, 1316 |
| BspDI | ATCGAT | 1 cut(s) | 884 |
| BspFNI | CGCG | 1 cut(s) | 123 |
| BspLI | GGNNCC | 6 cut(s) | 109, 116, 266, 322, 859, 1242 |
| BspMAI | CTGCAG | 2 cut(s) | 384, 835 |
| BspPI | GGATC | 3 cut(s) | 54, 997, 1488 |
| BspQI | GCTCTTC | 1 cut(s) | 5 |
| BspT104I | TTCGAA | 1 cut(s) | 1345 |
| BspT107I | GGYRCC | 2 cut(s) | 264, 857 |
| BsrDI | GCAATG | 1 cut(s) | 1558 |
| BsrFI | RCCGGY | 5 cut(s) | 65, 171, 186, 682, 781 |
| BsrI | ACTGG | 6 cut(s) | 192, 277, 324, 870, 941, 1073 |
| BssAI | RCCGGY | 5 cut(s) | 65, 171, 186, 682, 781 |
| BssMI | GATC | 8 cut(s) | 59, 336, 406, 655, 989, 1167, 1480, 1606 |
| BssT1I | CCWWGG | 6 cut(s) | 40, 260, 571, 601, 1427, 1584 |
| Bst2UI | CCWGG | 2 cut(s) | 112, 1238 |
| Bst4CI | ACNGT | 2 cut(s) | 1340, 1421 |
| Bst6I | CTCTTC | 4 cut(s) | 5, 677, 958, 1350 |
| BstBI | TTCGAA | 1 cut(s) | 1345 |
| BstC8I | GCNNGC | 6 cut(s) | 125, 246, 684, 783, 801, 1560 |
| BstDEI | CTNAG | 7 cut(s) | 340, 345, 354, 490, 849, 1275, 1303 |
| BstDSI | CCRYGG | 3 cut(s) | 201, 260, 687 |
| BstF5I | GGATG | 3 cut(s) | 147, 426, 726 |
| BstFNI | CGCG | 1 cut(s) | 123 |
| BstHHI | GCGC | 1 cut(s) | 1551 |
| BstKTI | GATC | 8 cut(s) | 62, 339, 409, 658, 992, 1170, 1483, 1609 |
| BstMAI | GTCTC | 3 cut(s) | 379, 1081, 1391 |
| BstMBI | GATC | 8 cut(s) | 59, 336, 406, 655, 989, 1167, 1480, 1606 |
| BstMCI | CGRYCG | 4 cut(s) | 70, 187, 693, 1264 |
| BstNI | CCWGG | 2 cut(s) | 112, 1238 |
| BstNSI | RCATGY | 1 cut(s) | 781 |
| BstSCI | CCNGG | 3 cut(s) | 110, 692, 1236 |
| BstSFI | CTRYAG | 2 cut(s) | 380, 831 |
| BstUI | CGCG | 1 cut(s) | 123 |
| BstV2I | GAAGAC | 1 cut(s) | 760 |
| BstX2I | RGATCY | 1 cut(s) | 1480 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 331, 572 |
| BstYI | RGATCY | 1 cut(s) | 1480 |
| BstZI | CGGCCG | 3 cut(s) | 67, 690, 1261 |
| Bsu15I | ATCGAT | 1 cut(s) | 884 |
| BsuTUI | ATCGAT | 1 cut(s) | 884 |
| BtgI | CCRYGG | 3 cut(s) | 201, 260, 687 |
| BtgZI | GCGATG | 1 cut(s) | 915 |
| BtrI | CACGTC | 1 cut(s) | 1411 |
| BtsCI | GGATG | 3 cut(s) | 147, 426, 726 |
| BtsI | GCAGTG | 1 cut(s) | 684 |
| BtsIMutI | CAGTG | 4 cut(s) | 331, 684, 803, 1311 |
| Cac8I | GCNNGC | 6 cut(s) | 125, 246, 684, 783, 801, 1560 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1483 |
| CfoI | GCGC | 1 cut(s) | 1551 |
| Cfr10I | RCCGGY | 5 cut(s) | 65, 171, 186, 682, 781 |
| Cfr13I | GGNCC | 7 cut(s) | 107, 115, 189, 1240, 1405, 1424, 1588 |
| ClaI | ATCGAT | 1 cut(s) | 884 |
| CseI | GACGC | 2 cut(s) | 4, 968 |
| Csp6I | GTAC | 4 cut(s) | 858, 1062, 1128, 1598 |
| CviAII | CATG | 9 cut(s) | 7, 261, 466, 729, 749, 778, 1447, 1540, 1546 |
| CviQI | GTAC | 4 cut(s) | 858, 1062, 1128, 1598 |
| DdeI | CTNAG | 7 cut(s) | 340, 345, 354, 490, 849, 1275, 1303 |
| DpnI | GATC | 8 cut(s) | 61, 338, 408, 657, 991, 1169, 1482, 1608 |
| DpnII | GATC | 8 cut(s) | 59, 336, 406, 655, 989, 1167, 1480, 1606 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 978 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 978 |
| EaeI | YGGCCR | 6 cut(s) | 67, 684, 690, 1261, 1521, 1542 |
| EagI | CGGCCG | 3 cut(s) | 67, 690, 1261 |
| Eam1104I | CTCTTC | 4 cut(s) | 5, 677, 958, 1350 |
| EarI | CTCTTC | 4 cut(s) | 5, 677, 958, 1350 |
| EciI | GGCGGA | 1 cut(s) | 1284 |
| Ecl136II | GAGCTC | 2 cut(s) | 825, 1174 |
| EclXI | CGGCCG | 3 cut(s) | 67, 690, 1261 |
| Eco130I | CCWWGG | 6 cut(s) | 40, 260, 571, 601, 1427, 1584 |
| Eco147I | AGGCCT | 1 cut(s) | 606 |
| Eco24I | GRGCYC | 2 cut(s) | 827, 1176 |
| Eco47I | GGWCC | 4 cut(s) | 115, 1240, 1405, 1424 |
| Eco52I | CGGCCG | 3 cut(s) | 67, 690, 1261 |
| Eco53kI | GAGCTC | 2 cut(s) | 825, 1174 |
| Eco57I | CTGAAG | 1 cut(s) | 848 |
| EcoICRI | GAGCTC | 2 cut(s) | 825, 1174 |
| EcoO109I | RGGNCCY | 2 cut(s) | 107, 1240 |
| EcoRI | GAATTC | 1 cut(s) | 1473 |
| EcoRII | CCWGG | 2 cut(s) | 110, 1236 |
| EcoT14I | CCWWGG | 6 cut(s) | 40, 260, 571, 601, 1427, 1584 |
| EcoT38I | GRGCYC | 2 cut(s) | 827, 1176 |
| ErhI | CCWWGG | 6 cut(s) | 40, 260, 571, 601, 1427, 1584 |
| Esp3I | CGTCTC | 1 cut(s) | 1391 |
| FaeI | CATG | 9 cut(s) | 10, 264, 469, 732, 752, 781, 1450, 1543, 1549 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 461, 493 |
| FaqI | GGGAC | 2 cut(s) | 128, 410 |
| FatI | CATG | 9 cut(s) | 6, 260, 465, 728, 748, 777, 1446, 1539, 1545 |
| FauI | CCCGC | 1 cut(s) | 1325 |
| FokI | GGATG | 3 cut(s) | 134, 413, 733 |
| FriOI | GRGCYC | 2 cut(s) | 827, 1176 |
| FspBI | CTAG | 1 cut(s) | 1154 |
| FspI | TGCGCA | 1 cut(s) | 1550 |
| GlaI | GCGC | 1 cut(s) | 1550 |
| GsaI | CCCAGC | 2 cut(s) | 179, 625 |
| HapII | CCGG | 7 cut(s) | 66, 70, 172, 187, 683, 693, 782 |
| HgaI | GACGC | 2 cut(s) | 4, 968 |
| HhaI | GCGC | 1 cut(s) | 1551 |
| Hin1II | CATG | 9 cut(s) | 10, 264, 469, 732, 752, 781, 1450, 1543, 1549 |
| Hin6I | GCGC | 1 cut(s) | 1549 |
| HinP1I | GCGC | 1 cut(s) | 1549 |
| HindIII | AAGCTT | 2 cut(s) | 242, 421 |
| HpaII | CCGG | 7 cut(s) | 66, 70, 172, 187, 683, 693, 782 |
| HphI | GGTGA | 3 cut(s) | 346, 605, 638 |
| Hpy166II | GTNNAC | 2 cut(s) | 1424, 1462 |
| Hpy188III | TCNNGA | 8 cut(s) | 167, 217, 440, 514, 540, 635, 1478, 1576 |
| Hpy8I | GTNNAC | 2 cut(s) | 1424, 1462 |
| Hpy99I | CGWCG | 2 cut(s) | 20, 984 |
| HpyAV | CCTTC | 7 cut(s) | 214, 601, 872, 1056, 1355, 1396, 1522 |
| HpyCH4III | ACNGT | 2 cut(s) | 1340, 1421 |
| HpyCH4IV | ACGT | 1 cut(s) | 1410 |
| HpyCH4V | TGCA | 7 cut(s) | 34, 248, 382, 833, 1210, 1232, 1539 |
| HpyF3I | CTNAG | 7 cut(s) | 340, 345, 354, 490, 849, 1275, 1303 |
| HpySE526I | ACGT | 1 cut(s) | 1410 |
| Hsp92II | CATG | 9 cut(s) | 10, 264, 469, 732, 752, 781, 1450, 1543, 1549 |
| HspAI | GCGC | 1 cut(s) | 1549 |
| KpnI | GGTACC | 1 cut(s) | 861 |
| KroI | GCCGGC | 2 cut(s) | 682, 781 |
| KroNI | GCCGGC | 2 cut(s) | 684, 783 |
| Kzo9I | GATC | 8 cut(s) | 59, 336, 406, 655, 989, 1167, 1480, 1606 |
| LguI | GCTCTTC | 1 cut(s) | 5 |
| LmnI | GCTCC | 6 cut(s) | 314, 732, 841, 897, 1179, 1390 |
| LweI | GCATC | 3 cut(s) | 802, 1219, 1219 |
| MaeI | CTAG | 1 cut(s) | 1154 |
| MaeII | ACGT | 1 cut(s) | 1410 |
| MaeIII | GTNAC | 2 cut(s) | 47, 94 |
| MalI | GATC | 8 cut(s) | 61, 338, 408, 657, 991, 1169, 1482, 1608 |
| MboI | GATC | 8 cut(s) | 59, 336, 406, 655, 989, 1167, 1480, 1606 |
| MfeI | CAATTG | 1 cut(s) | 1057 |
| MflI | RGATCY | 1 cut(s) | 1480 |
| MhlI | GDGCHC | 3 cut(s) | 827, 1176, 1560 |
| MlsI | TGGCCA | 1 cut(s) | 1544 |
| MluNI | TGGCCA | 1 cut(s) | 1544 |
| MlyI | GAGTC | 2 cut(s) | 365, 695 |
| MmeI | TCCRAC | 1 cut(s) | 1045 |
| Mox20I | TGGCCA | 1 cut(s) | 1544 |
| MroNI | GCCGGC | 2 cut(s) | 682, 781 |
| MroXI | GAANNNNTTC | 1 cut(s) | 473 |
| MscI | TGGCCA | 1 cut(s) | 1544 |
| MseI | TTAA | 2 cut(s) | 1437, 1565 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1544 |
| Msp20I | TGGCCA | 1 cut(s) | 1544 |
| MspA1I | CMGCKG | 3 cut(s) | 344, 379, 494 |
| MspI | CCGG | 7 cut(s) | 66, 70, 172, 187, 683, 693, 782 |
| MspR9I | CCNGG | 3 cut(s) | 112, 694, 1238 |
| MunI | CAATTG | 1 cut(s) | 1057 |
| Mva1269I | GAATGC | 1 cut(s) | 1127 |
| MvaI | CCWGG | 2 cut(s) | 112, 1238 |
| MvnI | CGCG | 1 cut(s) | 123 |
| NaeI | GCCGGC | 2 cut(s) | 684, 783 |
| NciI | CCSGG | 1 cut(s) | 694 |
| NcoI | CCATGG | 1 cut(s) | 260 |
| NdeII | GATC | 8 cut(s) | 59, 336, 406, 655, 989, 1167, 1480, 1606 |
| NgoMIV | GCCGGC | 2 cut(s) | 682, 781 |
| NlaIII | CATG | 9 cut(s) | 10, 264, 469, 732, 752, 781, 1450, 1543, 1549 |
| NlaIV | GGNNCC | 6 cut(s) | 109, 116, 266, 322, 859, 1242 |
| NmuCI | GTSAC | 1 cut(s) | 47 |
| NsbI | TGCGCA | 1 cut(s) | 1550 |
| NspI | RCATGY | 1 cut(s) | 781 |
| NspV | TTCGAA | 1 cut(s) | 1345 |
| PasI | CCCWGGG | 1 cut(s) | 111 |
| PceI | AGGCCT | 1 cut(s) | 606 |
| PciSI | GCTCTTC | 1 cut(s) | 5 |
| PctI | GAATGC | 1 cut(s) | 1127 |
| PdiI | GCCGGC | 2 cut(s) | 684, 783 |
| PdmI | GAANNNNTTC | 1 cut(s) | 473 |
| PfeI | GAWTC | 8 cut(s) | 416, 443, 610, 661, 886, 1033, 1112, 1347 |
| PflFI | GACNNNGTC | 1 cut(s) | 1409 |
| PfoI | TCCNGGA | 1 cut(s) | 1236 |
| PleI | GAGTC | 2 cut(s) | 364, 695 |
| PpsI | GAGTC | 2 cut(s) | 364, 695 |
| PpuMI | RGGWCCY | 1 cut(s) | 1240 |
| Psp124BI | GAGCTC | 2 cut(s) | 827, 1176 |
| Psp5II | RGGWCCY | 1 cut(s) | 1240 |
| Psp6I | CCWGG | 2 cut(s) | 110, 1236 |
| PspFI | CCCAGC | 2 cut(s) | 175, 621 |
| PspGI | CCWGG | 2 cut(s) | 110, 1236 |
| PspN4I | GGNNCC | 6 cut(s) | 109, 116, 266, 322, 859, 1242 |
| PspPI | GGNCC | 7 cut(s) | 107, 115, 189, 1240, 1405, 1424, 1588 |
| PspPPI | RGGWCCY | 1 cut(s) | 1240 |
| PstI | CTGCAG | 2 cut(s) | 384, 835 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1483 |
| PsuI | RGATCY | 1 cut(s) | 1480 |
| PsyI | GACNNNGTC | 1 cut(s) | 1409 |
| PvuII | CAGCTG | 3 cut(s) | 344, 379, 494 |
| RsaI | GTAC | 4 cut(s) | 859, 1063, 1129, 1599 |
| RsaNI | GTAC | 4 cut(s) | 858, 1062, 1128, 1598 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1544 |
| SacI | GAGCTC | 2 cut(s) | 827, 1176 |
| SapI | GCTCTTC | 1 cut(s) | 5 |
| SaqAI | TTAA | 2 cut(s) | 1437, 1565 |
| Sau3AI | GATC | 8 cut(s) | 59, 336, 406, 655, 989, 1167, 1480, 1606 |
| Sau96I | GGNCC | 7 cut(s) | 107, 115, 189, 1240, 1405, 1424, 1588 |
| SchI | GAGTC | 2 cut(s) | 365, 695 |
| ScrFI | CCNGG | 3 cut(s) | 112, 694, 1238 |
| SduI | GDGCHC | 3 cut(s) | 827, 1176, 1560 |
| SfaNI | GCATC | 3 cut(s) | 802, 1219, 1219 |
| SfcI | CTRYAG | 2 cut(s) | 380, 831 |
| SfuI | TTCGAA | 1 cut(s) | 1345 |
| SinI | GGWCC | 4 cut(s) | 115, 1240, 1405, 1424 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1544 |
| SmlI | CTYRAG | 1 cut(s) | 538 |
| SmoI | CTYRAG | 1 cut(s) | 538 |
| SseBI | AGGCCT | 1 cut(s) | 606 |
| SspMI | CTAG | 1 cut(s) | 1154 |
| SstI | GAGCTC | 2 cut(s) | 827, 1176 |
| StuI | AGGCCT | 1 cut(s) | 606 |
| StyD4I | CCNGG | 3 cut(s) | 110, 692, 1236 |
| StyI | CCWWGG | 6 cut(s) | 40, 260, 571, 601, 1427, 1584 |
| TaaI | ACNGT | 2 cut(s) | 1340, 1421 |
| TaiI | ACGT | 1 cut(s) | 1413 |
| TaqI | TCGA | 8 cut(s) | 58, 699, 884, 1036, 1119, 1170, 1345, 1575 |
| TauI | GCSGC | 3 cut(s) | 123, 793, 1263 |
| TfiI | GAWTC | 8 cut(s) | 416, 443, 610, 661, 886, 1033, 1112, 1347 |
| Tru1I | TTAA | 2 cut(s) | 1437, 1565 |
| Tru9I | TTAA | 2 cut(s) | 1437, 1565 |
| TscAI | CASTG | 4 cut(s) | 331, 684, 810, 1311 |
| TseFI | GTSAC | 1 cut(s) | 47 |
| Tsp45I | GTSAC | 1 cut(s) | 47 |
| TspDTI | ATGAA | 8 cut(s) | 23, 415, 429, 482, 765, 918, 935, 1038 |
| TspRI | CASTG | 4 cut(s) | 331, 684, 810, 1311 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1409 |
| VpaK11BI | GGWCC | 4 cut(s) | 115, 1240, 1405, 1424 |
| XapI | RAATTY | 3 cut(s) | 906, 1473, 1491 |
| XceI | RCATGY | 1 cut(s) | 781 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 199, 1453 |
| XmnI | GAANNNNTTC | 1 cut(s) | 473 |
| XspI | CTAG | 1 cut(s) | 1154 |