pycom17g23660
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0008930
Physical Location & Seq
Forward (+)
21955688 .. 21956743
1056 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g23660.1

Sequence Viewer

Length: 1056 bp
ATGGGAATGGAGGGTTGTGGGGGAGAGATTGTGGAAGTCCAAGGCGGCCACATTGTTCGATCCACCGGACGCAAAGACCGTCACAGCAAGATTTACACCGCCAAAGGCCCCAGAGACCGCCGTGTCCGGTTGTCCGCCCACACTGCCATCCAATTCTATGATGTTCAAGACCGCCTCGGATATGATAGACCCAGTAAAGCCGTGGACTGGCTCATCAAGAAGGCCAAATCTTCCATTGACAAGCTCGTTGAGCTTCCACCTTGGCATCCTATCACTACTAGTAACCATGCTGCCGAAGCTGATGATCCGTTTCGGTCATCAAATCCAAATCCAAATGATATGGCAATTGCCGCAGCTGAGCAGCAATCAGAGTCCTCCTCCAGCTACAACTTTAACTTTGAGCTCCAAAGGCAAAGGCAATCAGACAACGATTCGAACTTCAACATTCCGCCATCTCTAGACTCAGACAACATAGCTGACACCATGAAGTCCTTCTTCCCCACAAACACTAGTAGCAACGCCGCTGCTGCTTCCTCCGTTGACGATTTCCGTAGTTACCCAACCGATCCCCATCTAATTTCAGCAACTACCCAAGACCTTGGCCTCTCTCTCCACTCTTTCCAAGACCAAGGCCTAAACATTCATCACAATCACACTCACTCTCACACTCAGCAGCCCTCTCAAGCCCTTTTCGCCGCCGCAGCGGCAACTGGATTTGACTCCTCCAGTTATCAGAGAATGGTGGCATGGAGCAATGAAAACAGAGGACTCGATGGGGGCTTTGTATTCAACTCACACTCTCACTCGTATGCTCAGCCCCAGCCTCACAATCATGGGGGTGATGGGAATCATGGGAGTACCCTTCAGTCCAGTTTTACGCCATCAGTTTCCACTCGCGCTTGGCAGCAGCAGCACTCTTCAATCTTTGGCACCTGCTTCGGCACCTCTGATGGCACCTCGCCTGCCTTCTGCATTCAAGGCGAGGAGGCTGAGAATGGTGTTATTTCAGATCGACCGTCTTCCACTTCCTCTCTGAATTCAACCCGCCAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCP

Protein Analysis

352

Amino Acids

38.33

Weight (kDa)

5.94

Isoelectric Point (pI)

50.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 23 - 140 1.5e-31 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 941
AasI GACNNNNNNGTC 1 cut(s) 122
Acc36I ACCTGC 1 cut(s) 941
AccB1I GGYRCC 3 cut(s) 929, 941, 953
AccII CGCG 1 cut(s) 897
AclWI GGATC 3 cut(s) 54, 299, 560
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 1 cut(s) 1036
AcuI CTGAAG 1 cut(s) 848
AfaI GTAC 1 cut(s) 859
AfiI CCNNNNNNNGG 1 cut(s) 207
AgsI TTSAA 6 cut(s) 167, 442, 790, 921, 977, 1041
AhlI ACTAGT 2 cut(s) 278, 509
AluBI AGCT 8 cut(s) 244, 253, 299, 356, 384, 403, 476, 1051
AluI AGCT 8 cut(s) 244, 253, 299, 356, 384, 403, 476, 1051
Alw21I GWGCWC 1 cut(s) 405
Alw26I GTCTC 1 cut(s) 108
AlwI GGATC 3 cut(s) 54, 299, 560
AoxI GGCC 5 cut(s) 46, 106, 222, 601, 631
ApoI RAATTY 1 cut(s) 1036
Asp700I GAANNNNTTC 1 cut(s) 491
AspLEI GCGC 1 cut(s) 899
AspS9I GGNCC 1 cut(s) 107
AsuHPI GGTGA 1 cut(s) 851
AsuII TTCGAA 1 cut(s) 434
BanI GGYRCC 3 cut(s) 929, 941, 953
BanII GRGCYC 1 cut(s) 405
BbsI GAAGAC 1 cut(s) 1011
Bbv12I GWGCWC 1 cut(s) 405
BccI CCATC 7 cut(s) 155, 460, 579, 767, 836, 889, 944
BceAI ACGGC 2 cut(s) 105, 185
BcgI CGANNNNNNTGC 2 cut(s) 919, 953
BcoDI GTCTC 1 cut(s) 108
BcuI ACTAGT 2 cut(s) 278, 509
BfaI CTAG 3 cut(s) 279, 458, 510
BfuAI ACCTGC 1 cut(s) 941
BglI GCCNNNNNGGC 1 cut(s) 704
BlpI GCTNAGC 2 cut(s) 357, 813
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 4 cut(s) 109, 931, 943, 955
BmrI ACTGGG 1 cut(s) 186
BmsI GCATC 1 cut(s) 274
BmuI ACTGGG 1 cut(s) 186
BpiI GAAGAC 1 cut(s) 1011
BplI GAGNNNNNCTC 2 cut(s) 362, 394
BpmI CTGGAG 2 cut(s) 364, 709
Bpu1102I GCTNAGC 2 cut(s) 357, 813
Bpu14I TTCGAA 1 cut(s) 434
BpuEI CTTGAG 1 cut(s) 666
BsaBI GATNNNNATC 2 cut(s) 570, 846
BsaI GGTCTC 1 cut(s) 108
BsaJI CCNNGG 6 cut(s) 40, 175, 201, 260, 598, 628
BsaWI WCCGGW 2 cut(s) 65, 126
BsaXI ACNNNNNCTCC 2 cut(s) 15, 45
Bsc4I CCNNNNNNNGG 1 cut(s) 207
Bse1I ACTGG 5 cut(s) 192, 212, 715, 726, 870
Bse3DI GCAATG 1 cut(s) 760
Bse8I GATNNNNATC 2 cut(s) 570, 846
BseDI CCNNGG 6 cut(s) 40, 175, 201, 260, 598, 628
BseGI GGATG 2 cut(s) 147, 265
BseJI GATNNNNATC 2 cut(s) 570, 846
BseLI CCNNNNNNNGG 1 cut(s) 207
BseMI GCAATG 1 cut(s) 760
BseMII CTCAG 5 cut(s) 348, 477, 683, 827, 981
BseNI ACTGG 5 cut(s) 192, 212, 715, 726, 870
BseRI GAGGAG 3 cut(s) 367, 712, 998
BseYI CCCAGC 1 cut(s) 819
Bsh1236I CGCG 1 cut(s) 897
Bsh1285I CGRYCG 1 cut(s) 1016
BshFI GGCC 5 cut(s) 48, 108, 224, 603, 633
BshNI GGYRCC 3 cut(s) 929, 941, 953
BsiEI CGRYCG 1 cut(s) 1016
BsiHKAI GWGCWC 1 cut(s) 405
BsiSI CCGG 2 cut(s) 66, 127
BslI CCNNNNNNNGG 1 cut(s) 207
BsmAI GTCTC 1 cut(s) 108
BsmI GAATGC 1 cut(s) 972
BsnI GGCC 5 cut(s) 48, 108, 224, 603, 633
Bso31I GGTCTC 1 cut(s) 108
Bsp119I TTCGAA 1 cut(s) 434
Bsp1286I GDGCHC 1 cut(s) 405
Bsp143I GATC 4 cut(s) 59, 304, 565, 1009
Bsp1720I GCTNAGC 2 cut(s) 357, 813
BspANI GGCC 5 cut(s) 48, 108, 224, 603, 633
BspCNI CTCAG 5 cut(s) 349, 476, 682, 826, 982
BspFNI CGCG 1 cut(s) 897
BspLI GGNNCC 4 cut(s) 109, 931, 943, 955
BspMI ACCTGC 1 cut(s) 941
BspPI GGATC 3 cut(s) 54, 299, 560
BspT104I TTCGAA 1 cut(s) 434
BspT107I GGYRCC 3 cut(s) 929, 941, 953
BspTNI GGTCTC 1 cut(s) 108
BsrDI GCAATG 1 cut(s) 760
BsrI ACTGG 5 cut(s) 192, 212, 715, 726, 870
BssECI CCNNGG 6 cut(s) 40, 175, 201, 260, 598, 628
BssMI GATC 4 cut(s) 59, 304, 565, 1009
BssT1I CCWWGG 4 cut(s) 40, 260, 598, 628
Bst4CI ACNGT 2 cut(s) 80, 1017
Bst6I CTCTTC 1 cut(s) 922
BstBI TTCGAA 1 cut(s) 434
BstC8I GCNNGC 2 cut(s) 963, 1049
BstDEI CTNAG 5 cut(s) 357, 463, 669, 813, 990
BstDSI CCRYGG 1 cut(s) 201
BstF5I GGATG 2 cut(s) 147, 265
BstFNI CGCG 1 cut(s) 897
BstHHI GCGC 1 cut(s) 899
BstKTI GATC 4 cut(s) 62, 307, 568, 1012
BstMAI GTCTC 1 cut(s) 108
BstMBI GATC 4 cut(s) 59, 304, 565, 1009
BstMCI CGRYCG 1 cut(s) 1016
BstUI CGCG 1 cut(s) 897
BstV2I GAAGAC 1 cut(s) 1011
BstXI CCANNNNNNTGG 1 cut(s) 599
BsuRI GGCC 5 cut(s) 48, 108, 224, 603, 633
BtgI CCRYGG 1 cut(s) 201
BtsCI GGATG 2 cut(s) 147, 265
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 141
BveI ACCTGC 1 cut(s) 941
Cac8I GCNNGC 2 cut(s) 963, 1049
CfoI GCGC 1 cut(s) 899
Cfr13I GGNCC 1 cut(s) 107
CseI GACGC 1 cut(s) 78
Csp6I GTAC 1 cut(s) 858
CviAII CATG 5 cut(s) 287, 484, 747, 833, 851
CviQI GTAC 1 cut(s) 858
DdeI CTNAG 5 cut(s) 357, 463, 669, 813, 990
DpnI GATC 4 cut(s) 61, 306, 567, 1011
DpnII GATC 4 cut(s) 59, 304, 565, 1009
DrdI GACNNNNNNGTC 1 cut(s) 122
DseDI GACNNNNNNGTC 1 cut(s) 122
EaeI YGGCCR 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 922
EarI CTCTTC 1 cut(s) 922
EciI GGCGGA 2 cut(s) 124, 438
Ecl136II GAGCTC 1 cut(s) 403
Eco130I CCWWGG 4 cut(s) 40, 260, 598, 628
Eco147I AGGCCT 1 cut(s) 633
Eco24I GRGCYC 1 cut(s) 405
Eco31I GGTCTC 1 cut(s) 108
Eco53kI GAGCTC 1 cut(s) 403
Eco57I CTGAAG 1 cut(s) 848
EcoICRI GAGCTC 1 cut(s) 403
EcoO109I RGGNCCY 1 cut(s) 107
EcoRI GAATTC 1 cut(s) 1036
EcoT14I CCWWGG 4 cut(s) 40, 260, 598, 628
EcoT38I GRGCYC 1 cut(s) 405
ErhI CCWWGG 4 cut(s) 40, 260, 598, 628
FaeI CATG 5 cut(s) 290, 487, 750, 836, 854
FalI AAGNNNNNCTT 2 cut(s) 479, 511
FatI CATG 5 cut(s) 286, 483, 746, 832, 850
FauI CCCGC 1 cut(s) 1052
FokI GGATG 2 cut(s) 134, 252
FriOI GRGCYC 1 cut(s) 405
FspBI CTAG 3 cut(s) 279, 458, 510
GlaI GCGC 1 cut(s) 898
GsaI CCCAGC 1 cut(s) 823
GsuI CTGGAG 2 cut(s) 364, 709
HaeIII GGCC 5 cut(s) 48, 108, 224, 603, 633
HapII CCGG 2 cut(s) 66, 127
HgaI GACGC 1 cut(s) 78
HhaI GCGC 1 cut(s) 899
Hin1II CATG 5 cut(s) 290, 487, 750, 836, 854
Hin6I GCGC 1 cut(s) 897
HinP1I GCGC 1 cut(s) 897
HincII GTYRAC 1 cut(s) 541
HindII GTYRAC 1 cut(s) 541
HinfI GANTC 6 cut(s) 371, 431, 461, 719, 768, 847
HpaII CCGG 2 cut(s) 66, 127
HphI GGTGA 1 cut(s) 851
Hpy166II GTNNAC 2 cut(s) 205, 541
Hpy188I TCNGA 8 cut(s) 179, 370, 424, 466, 735, 949, 1009, 1035
Hpy188III TCNNGA 3 cut(s) 167, 217, 458
Hpy8I GTNNAC 2 cut(s) 205, 541
HpyAV CCTTC 4 cut(s) 214, 502, 872, 976
HpyCH4III ACNGT 2 cut(s) 80, 1017
HpyCH4V TGCA 1 cut(s) 972
HpyF3I CTNAG 5 cut(s) 357, 463, 669, 813, 990
Hsp92II CATG 5 cut(s) 290, 487, 750, 836, 854
HspAI GCGC 1 cut(s) 897
Kzo9I GATC 4 cut(s) 59, 304, 565, 1009
LmnI GCTCC 2 cut(s) 408, 750
LweI GCATC 1 cut(s) 274
MaeI CTAG 3 cut(s) 279, 458, 510
MaeIII GTNAC 3 cut(s) 80, 281, 554
MalI GATC 4 cut(s) 61, 306, 567, 1011
MboI GATC 4 cut(s) 59, 304, 565, 1009
MboII GAAGA 4 cut(s) 222, 487, 909, 1011
MfeI CAATTG 1 cut(s) 345
MhlI GDGCHC 1 cut(s) 405
MluCI AATT 4 cut(s) 152, 345, 576, 1036
MlyI GAGTC 4 cut(s) 380, 455, 713, 762
MroXI GAANNNNTTC 1 cut(s) 491
MseI TTAA 1 cut(s) 393
MslI CAYNNNNRTG 3 cut(s) 807, 831, 837
MspA1I CMGCKG 3 cut(s) 356, 524, 704
MspI CCGG 2 cut(s) 66, 127
MunI CAATTG 1 cut(s) 345
Mva1269I GAATGC 1 cut(s) 972
MvnI CGCG 1 cut(s) 897
NdeII GATC 4 cut(s) 59, 304, 565, 1009
NlaIII CATG 5 cut(s) 290, 487, 750, 836, 854
NlaIV GGNNCC 4 cut(s) 109, 931, 943, 955
NmuCI GTSAC 1 cut(s) 80
NspV TTCGAA 1 cut(s) 434
PaqCI CACCTGC 1 cut(s) 941
PceI AGGCCT 1 cut(s) 633
PcsI WCGNNNNNNNCGW 1 cut(s) 76
PctI GAATGC 1 cut(s) 972
PdmI GAANNNNTTC 1 cut(s) 491
PfeI GAWTC 2 cut(s) 431, 847
PleI GAGTC 4 cut(s) 379, 455, 713, 762
PpsI GAGTC 4 cut(s) 379, 455, 713, 762
Psp124BI GAGCTC 1 cut(s) 405
PspFI CCCAGC 1 cut(s) 819
PspN4I GGNNCC 4 cut(s) 109, 931, 943, 955
PspPI GGNCC 1 cut(s) 107
PvuII CAGCTG 1 cut(s) 356
RsaI GTAC 1 cut(s) 859
RsaNI GTAC 1 cut(s) 858
RseI CAYNNNNRTG 3 cut(s) 807, 831, 837
SacI GAGCTC 1 cut(s) 405
SaqAI TTAA 1 cut(s) 393
Sau3AI GATC 4 cut(s) 59, 304, 565, 1009
Sau96I GGNCC 1 cut(s) 107
SchI GAGTC 4 cut(s) 380, 455, 713, 762
SduI GDGCHC 1 cut(s) 405
SfaNI GCATC 1 cut(s) 274
SfuI TTCGAA 1 cut(s) 434
SmiMI CAYNNNNRTG 3 cut(s) 807, 831, 837
SmlI CTYRAG 1 cut(s) 681
SmoI CTYRAG 1 cut(s) 681
SpeI ACTAGT 2 cut(s) 278, 509
Sse9I AATT 4 cut(s) 152, 345, 576, 1036
SseBI AGGCCT 1 cut(s) 633
SspMI CTAG 3 cut(s) 279, 458, 510
SstI GAGCTC 1 cut(s) 405
StuI AGGCCT 1 cut(s) 633
StyI CCWWGG 4 cut(s) 40, 260, 598, 628
TaaI ACNGT 2 cut(s) 80, 1017
TaqI TCGA 4 cut(s) 58, 434, 771, 1012
TaqII GACCGA 1 cut(s) 303
TasI AATT 4 cut(s) 152, 345, 576, 1036
TauI GCSGC 6 cut(s) 48, 353, 524, 698, 701, 707
TfiI GAWTC 2 cut(s) 431, 847
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TscAI CASTG 1 cut(s) 148
TseFI GTSAC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 3 cut(s) 500, 632, 771
TspGWI ACGGA 3 cut(s) 297, 526, 539
TspRI CASTG 1 cut(s) 148
XapI RAATTY 1 cut(s) 1036
XbaI TCTAGA 1 cut(s) 457
XcmI CCANNNNNNNNNTGG 1 cut(s) 199
XmnI GAANNNNTTC 1 cut(s) 491
XspI CTAG 3 cut(s) 279, 458, 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.