Rorug02G0282500
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0008930
Physical Location & Seq
Forward (+)
30623169 .. 30625999
2831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0282500.1

Sequence Viewer

Length: 1086 bp
ATGTGGGCAGCTTCGTGCCTTGCGTCGTGTTGTGCCGGCTGTGCTTGCAATTTGTGCCAGTCGGCGGTTTCTAGTATCAGCCGCCGCTCTGCGAGGATTGCATACTGTTTCCTCTTTGCGTTCTCTCTCATTGCCTTTACTGGAAAAGATACCTTATACCTGACAGGGAGTGGTTTGAAACCGAGGCTGTGCTTCGTGTTAGCTTGGGAAACTTTCTGTTCTTCACCATCCTGCATGTCAGTTGTGATGATTGGTGTGAAGAGTCAAAAGGATCCCCGTGATAGTATCCACCATGGTGGATGGATGATGAAACTTACTTGCTGGTTCCTTTTGGTGATTTTCTCATTGTTTTTCATACCAAACGGGATTATTAGTTTCTATGAGACAATTGCAAAGTTTGGCTCAGGATTCTTTCTTCTCGTACAAGTTGTGCTTCTGTTGGATTTTGTTCATGGATGGAATGACAAATGGGTTGGATATGATGAGCAGTTCTGGTATGTTGCTCTTTTTGTTGTTTCTCTAGTTTGTTATCTGGCGACATTCATCTTCTCTGGACTTCTTTTCCATTTGTTCACGCCATCTGGACATGACTGTGGGCTGAACACCTTCTTTATTGTCATGACTCTGATATTCGTCTTCGTGTTTCTTATAGTGGCACTGCATCCTACTGTAAGTGGCAGCATTTTACCCGCGTCAGTTATATGTCTGCTTACCACTGTTCTATCTGTGGTTTATTCTGCTGTGCGTGCTGGATCTTCCACTACTCTTCTGTCCCCGCCTAGTTCACCTCGTGCAGGTGCTGGAAAACCACTGCTCCCATTGGATAAGCCAGAAGAACATGAAGAAAATGAGAAAGCCAAGTCTGTGTCGTATTCATATGCCTTCTTCCACATCATCTTCTCACTTGCAAGTATGTACTCGGCAATGCTTCTGACAGGGTGGTTAACCTCAGTTGGGGAGAGCGGGAAGTCGATTGACGTGGGGTGGCCGTCCGTCTGGGTGAGGGTCATGACTAGTTGGGCAACTGCAGGTCTCTACATCTGGTCCCTTTTGGCTCCTATTCTGTTCCCTGAGAGGGAATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCP

Protein Analysis

361

Amino Acids

39.86

Weight (kDa)

7.49

Isoelectric Point (pI)

37.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serinc PF03348 78 - 248 2e-46 Serine incorporator (Serinc)
Serinc PF03348 232 - 359 9.1e-31 Serine incorporator (Serinc)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 785
Acc36I ACCTGC 2 cut(s) 785, 1019
AccBSI CCGCTC 2 cut(s) 87, 963
AccII CGCG 1 cut(s) 692
AciI CCGC 6 cut(s) 65, 82, 85, 690, 776, 963
AclWI GGATC 3 cut(s) 266, 279, 760
AcoI YGGCCR 1 cut(s) 986
AcsI RAATTY 1 cut(s) 1079
AdeI CACNNNGTG 1 cut(s) 791
AfaI GTAC 2 cut(s) 423, 917
AfiI CCNNNNNNNGG 4 cut(s) 64, 794, 954, 1075
AgsI TTSAA 1 cut(s) 178
AhlI ACTAGT 1 cut(s) 1013
AjiI CACGTC 1 cut(s) 979
AleI CACNNNNGTG 1 cut(s) 294
AluBI AGCT 2 cut(s) 11, 203
AluI AGCT 2 cut(s) 11, 203
Alw26I GTCTC 2 cut(s) 377, 1037
AlwI GGATC 3 cut(s) 266, 279, 760
AlwNI CAGNNNCTG 1 cut(s) 800
AoxI GGCC 1 cut(s) 986
ApeKI GCWGC 2 cut(s) 8, 678
ApoI RAATTY 1 cut(s) 1079
Asp700I GAANNNNTTC 1 cut(s) 605
AspS9I GGNCC 1 cut(s) 1044
AsuHPI GGTGA 4 cut(s) 216, 346, 777, 1012
AvaII GGWCC 1 cut(s) 1044
BamHI GGATCC 1 cut(s) 271
BauI CACGAG 1 cut(s) 789
BbsI GAAGAC 1 cut(s) 628
BbvI GCAGC 2 cut(s) 20, 690
BccI CCATC 4 cut(s) 235, 294, 450, 586
BceAI ACGGC 1 cut(s) 973
BciVI GTATCC 1 cut(s) 296
BcoDI GTCTC 2 cut(s) 377, 1037
BcuI ACTAGT 1 cut(s) 1013
BfaI CTAG 4 cut(s) 72, 521, 780, 1014
BfmI CTRYAG 1 cut(s) 1026
BfuAI ACCTGC 2 cut(s) 785, 1019
BfuI GTATCC 1 cut(s) 296
BisI GCNGC 4 cut(s) 9, 82, 85, 679
BlsI GCNGC 4 cut(s) 10, 83, 86, 680
Bme18I GGWCC 1 cut(s) 1044
BmgBI CACGTC 1 cut(s) 979
BmgT120I GGNCC 1 cut(s) 1044
BmiI GGNNCC 4 cut(s) 273, 326, 1046, 1056
BmsI GCATC 1 cut(s) 670
BpiI GAAGAC 1 cut(s) 628
Bpu10I CCTNAGC 1 cut(s) 403
BsaI GGTCTC 1 cut(s) 1037
BsaJI CCNNGG 2 cut(s) 182, 292
BsaXI ACNNNNNCTCC 2 cut(s) 798, 828
Bsc4I CCNNNNNNNGG 4 cut(s) 64, 794, 954, 1075
Bse118I RCCGGY 1 cut(s) 35
Bse1I ACTGG 2 cut(s) 58, 145
Bse3DI GCAATG 2 cut(s) 129, 930
BseDI CCNNGG 2 cut(s) 182, 292
BseGI GGATG 5 cut(s) 227, 305, 309, 461, 661
BseLI CCNNNNNNNGG 4 cut(s) 64, 794, 954, 1075
BseMI GCAATG 2 cut(s) 129, 930
BseMII CTCAG 3 cut(s) 417, 963, 1062
BseNI ACTGG 2 cut(s) 58, 145
BseXI GCAGC 2 cut(s) 20, 690
BsgI GTGCAG 1 cut(s) 813
Bsh1236I CGCG 1 cut(s) 692
BshFI GGCC 1 cut(s) 988
BsiSI CCGG 1 cut(s) 36
BslFI GGGAC 2 cut(s) 757, 1030
BslI CCNNNNNNNGG 4 cut(s) 64, 794, 954, 1075
BsmAI GTCTC 2 cut(s) 377, 1037
BsmFI GGGAC 2 cut(s) 757, 1030
BsnI GGCC 1 cut(s) 988
Bso31I GGTCTC 1 cut(s) 1037
Bsp143I GATC 2 cut(s) 271, 752
Bsp19I CCATGG 1 cut(s) 292
BspACI CCGC 6 cut(s) 65, 82, 85, 690, 776, 963
BspANI GGCC 1 cut(s) 988
BspCNI CTCAG 3 cut(s) 416, 962, 1063
BspFNI CGCG 1 cut(s) 692
BspHI TCATGA 2 cut(s) 618, 1008
BspLI GGNNCC 4 cut(s) 273, 326, 1046, 1056
BspMAI CTGCAG 1 cut(s) 1030
BspMI ACCTGC 2 cut(s) 785, 1019
BspPI GGATC 3 cut(s) 266, 279, 760
BspTNI GGTCTC 1 cut(s) 1037
BsrBI CCGCTC 2 cut(s) 87, 963
BsrDI GCAATG 2 cut(s) 129, 930
BsrFI RCCGGY 1 cut(s) 35
BsrI ACTGG 2 cut(s) 58, 145
BssAI RCCGGY 1 cut(s) 35
BssECI CCNNGG 2 cut(s) 182, 292
BssMI GATC 2 cut(s) 271, 752
BssSI CACGAG 1 cut(s) 789
BssT1I CCWWGG 1 cut(s) 292
Bst2BI CACGAG 1 cut(s) 789
Bst4CI ACNGT 4 cut(s) 107, 593, 670, 718
Bst6I CTCTTC 2 cut(s) 254, 771
BstAPI GCANNNNNTGC 1 cut(s) 54
BstC8I GCNNGC 3 cut(s) 37, 46, 747
BstDEI CTNAG 3 cut(s) 403, 949, 1071
BstDSI CCRYGG 1 cut(s) 292
BstENI CCTNNNNNAGG 1 cut(s) 792
BstF5I GGATG 5 cut(s) 227, 305, 309, 461, 661
BstFNI CGCG 1 cut(s) 692
BstKTI GATC 2 cut(s) 274, 755
BstMAI GTCTC 2 cut(s) 377, 1037
BstMBI GATC 2 cut(s) 271, 752
BstMWI GCNNNNNNNGC 5 cut(s) 41, 45, 54, 98, 746
BstNSI RCATGY 1 cut(s) 238
BstSFI CTRYAG 1 cut(s) 1026
BstUI CGCG 1 cut(s) 692
BstV1I GCAGC 2 cut(s) 20, 690
BstV2I GAAGAC 1 cut(s) 628
BstX2I RGATCY 2 cut(s) 271, 752
BstXI CCANNNNNNTGG 1 cut(s) 296
BstYI RGATCY 2 cut(s) 271, 752
BsuI GTATCC 1 cut(s) 296
BsuRI GGCC 1 cut(s) 988
BtgI CCRYGG 1 cut(s) 292
BtrI CACGTC 1 cut(s) 979
BtsCI GGATG 5 cut(s) 227, 305, 309, 461, 661
BtsI GCAGTG 2 cut(s) 656, 809
BtsIMutI CAGTG 3 cut(s) 656, 714, 809
BveI ACCTGC 2 cut(s) 785, 1019
Cac8I GCNNGC 3 cut(s) 37, 46, 747
CaiI CAGNNNCTG 1 cut(s) 800
CciI TCATGA 2 cut(s) 618, 1008
Cfr10I RCCGGY 1 cut(s) 35
Cfr13I GGNCC 1 cut(s) 1044
CseI GACGC 2 cut(s) 12, 681
Csp6I GTAC 2 cut(s) 422, 916
CviAII CATG 7 cut(s) 235, 293, 452, 587, 619, 839, 1009
CviQI GTAC 2 cut(s) 422, 916
DdeI CTNAG 3 cut(s) 403, 949, 1071
DpnI GATC 2 cut(s) 273, 754
DpnII GATC 2 cut(s) 271, 752
DraIII CACNNNGTG 1 cut(s) 791
EaeI YGGCCR 1 cut(s) 986
Eam1104I CTCTTC 2 cut(s) 254, 771
EarI CTCTTC 2 cut(s) 254, 771
Eco130I CCWWGG 1 cut(s) 292
Eco31I GGTCTC 1 cut(s) 1037
Eco47I GGWCC 1 cut(s) 1044
EcoNI CCTNNNNNAGG 1 cut(s) 792
EcoT14I CCWWGG 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 292
FaeI CATG 7 cut(s) 238, 296, 455, 590, 622, 842, 1012
FalI AAGNNNNNCTT 2 cut(s) 417, 449
FaqI GGGAC 2 cut(s) 757, 1030
FatI CATG 7 cut(s) 234, 292, 451, 586, 618, 838, 1008
FauI CCCGC 3 cut(s) 697, 783, 956
FauNDI CATATG 1 cut(s) 877
Fnu4HI GCNGC 4 cut(s) 9, 82, 85, 679
FokI GGATG 5 cut(s) 214, 312, 316, 468, 648
Fsp4HI GCNGC 4 cut(s) 9, 82, 85, 679
FspBI CTAG 4 cut(s) 72, 521, 780, 1014
GluI GCNGC 4 cut(s) 9, 82, 85, 679
HaeIII GGCC 1 cut(s) 988
HapII CCGG 1 cut(s) 36
HgaI GACGC 2 cut(s) 12, 681
Hin1II CATG 7 cut(s) 238, 296, 455, 590, 622, 842, 1012
HincII GTYRAC 1 cut(s) 945
HindII GTYRAC 1 cut(s) 945
HinfI GANTC 3 cut(s) 262, 408, 622
HpaI GTTAAC 1 cut(s) 945
HpaII CCGG 1 cut(s) 36
HphI GGTGA 4 cut(s) 216, 346, 777, 1012
Hpy166II GTNNAC 3 cut(s) 573, 785, 945
Hpy188I TCNGA 2 cut(s) 627, 933
Hpy188III TCNNGA 5 cut(s) 405, 552, 582, 619, 1009
Hpy8I GTNNAC 3 cut(s) 573, 785, 945
Hpy99I CGWCG 1 cut(s) 28
HpyAV CCTTC 2 cut(s) 616, 892
HpyCH4III ACNGT 4 cut(s) 107, 593, 670, 718
HpyCH4IV ACGT 1 cut(s) 978
HpyCH4V TGCA 8 cut(s) 48, 101, 234, 392, 661, 794, 908, 1028
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 45, 54, 98, 746
HpyF3I CTNAG 3 cut(s) 403, 949, 1071
HpySE526I ACGT 1 cut(s) 978
Hsp92II CATG 7 cut(s) 238, 296, 455, 590, 622, 842, 1012
KroI GCCGGC 1 cut(s) 35
KroNI GCCGGC 1 cut(s) 37
KspAI GTTAAC 1 cut(s) 945
Kzo9I GATC 2 cut(s) 271, 752
LmnI GCTCC 2 cut(s) 819, 1060
Lsp1109I GCAGC 2 cut(s) 20, 690
LweI GCATC 1 cut(s) 670
MaeI CTAG 4 cut(s) 72, 521, 780, 1014
MaeII ACGT 1 cut(s) 978
MalI GATC 2 cut(s) 273, 754
MbiI CCGCTC 2 cut(s) 87, 963
MboI GATC 2 cut(s) 271, 752
MfeI CAATTG 1 cut(s) 387
MflI RGATCY 2 cut(s) 271, 752
MluCI AATT 3 cut(s) 49, 387, 1079
MlyI GAGTC 2 cut(s) 271, 616
MmeI TCCRAC 2 cut(s) 420, 454
MnlI CCTC 7 cut(s) 87, 122, 177, 798, 958, 996, 1068
MroNI GCCGGC 1 cut(s) 35
MroXI GAANNNNTTC 1 cut(s) 605
MseI TTAA 2 cut(s) 944, 1084
MslI CAYNNNNRTG 2 cut(s) 294, 591
MspI CCGG 1 cut(s) 36
MunI CAATTG 1 cut(s) 387
MvnI CGCG 1 cut(s) 692
MwoI GCNNNNNNNGC 5 cut(s) 41, 45, 54, 98, 746
NaeI GCCGGC 1 cut(s) 37
NcoI CCATGG 1 cut(s) 292
NdeI CATATG 1 cut(s) 877
NdeII GATC 2 cut(s) 271, 752
NgoMIV GCCGGC 1 cut(s) 35
NlaIII CATG 7 cut(s) 238, 296, 455, 590, 622, 842, 1012
NlaIV GGNNCC 4 cut(s) 273, 326, 1046, 1056
NmeAIII GCCGAG 1 cut(s) 899
NspI RCATGY 1 cut(s) 238
OliI CACNNNNGTG 1 cut(s) 294
PagI TCATGA 2 cut(s) 618, 1008
PaqCI CACCTGC 1 cut(s) 785
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PdiI GCCGGC 1 cut(s) 37
PdmI GAANNNNTTC 1 cut(s) 605
PfeI GAWTC 1 cut(s) 408
PkrI GCNGC 4 cut(s) 10, 83, 86, 680
PleI GAGTC 2 cut(s) 270, 616
PpsI GAGTC 2 cut(s) 270, 616
PspN4I GGNNCC 4 cut(s) 273, 326, 1046, 1056
PspPI GGNCC 1 cut(s) 1044
PstI CTGCAG 1 cut(s) 1030
PstNI CAGNNNCTG 1 cut(s) 800
PsuI RGATCY 2 cut(s) 271, 752
RsaI GTAC 2 cut(s) 423, 917
RsaNI GTAC 2 cut(s) 422, 916
RseI CAYNNNNRTG 2 cut(s) 294, 591
SaqAI TTAA 2 cut(s) 944, 1084
SatI GCNGC 4 cut(s) 9, 82, 85, 679
Sau3AI GATC 2 cut(s) 271, 752
Sau96I GGNCC 1 cut(s) 1044
SchI GAGTC 2 cut(s) 271, 616
SfaNI GCATC 1 cut(s) 670
SfcI CTRYAG 1 cut(s) 1026
SinI GGWCC 1 cut(s) 1044
SmiMI CAYNNNNRTG 2 cut(s) 294, 591
SpeI ACTAGT 1 cut(s) 1013
Sse9I AATT 3 cut(s) 49, 387, 1079
SsiI CCGC 6 cut(s) 65, 82, 85, 690, 776, 963
SspMI CTAG 4 cut(s) 72, 521, 780, 1014
StyI CCWWGG 1 cut(s) 292
TaaI ACNGT 4 cut(s) 107, 593, 670, 718
TaiI ACGT 1 cut(s) 981
TaqI TCGA 1 cut(s) 971
TasI AATT 3 cut(s) 49, 387, 1079
TatI WGTACW 1 cut(s) 915
TauI GCSGC 2 cut(s) 84, 87
TfiI GAWTC 1 cut(s) 408
Tru1I TTAA 2 cut(s) 944, 1084
Tru9I TTAA 2 cut(s) 944, 1084
TscAI CASTG 3 cut(s) 663, 721, 816
TseI GCWGC 2 cut(s) 8, 678
TspDTI ATGAA 6 cut(s) 323, 343, 440, 532, 855, 864
TspGWI ACGGA 1 cut(s) 982
TspRI CASTG 3 cut(s) 663, 721, 816
VpaK11BI GGWCC 1 cut(s) 1044
XagI CCTNNNNNAGG 1 cut(s) 792
XapI RAATTY 1 cut(s) 1079
XceI RCATGY 1 cut(s) 238
XmnI GAANNNNTTC 1 cut(s) 605
XspI CTAG 4 cut(s) 72, 521, 780, 1014
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.