Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008930

Physical Location & Seq

Genomic Coordinates Forward (+)

30626979 .. 30627934

Gene Structure 956 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0282600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGTCTGAAGCACTTGTATCCTTCCTTGTAGAGCAGTTGGGTTCCATCATCTTCCAACAGGTGGAACAAAACGTGAGACTAGTTGTGAATGTCAAAAAAGAAGTAGTAAGCCTTGCCCTCAATCTCGAAGCTATTCAAGCTGTGCTCGAGGATGCAGAGAGGAGGCAAGTGAAGGAGGCCAACGTGAGACGCTGGCTCAATAGTCTGAAAGAAGTGTCGTACGAGATAGACGATGTGGTGGACGAGTGGAGAACTGAAATCCTGAAACAACAAATTGAGAAGCAAGGTGAAAATGTTGTTGTACCTAAGAAGAAGGTATGTTTCTCTATCCCCTTCCATTGTCTTTGTAATGGCCAAGTCACTCAGATAATTTTTCGTCGTGACATTGCTGTGAGGATAAAAGAGTTGAATGAGAAGTTAGCTTTGATTCATGAACAGCGAAAATTTTATAAGTTTCTTGAAAATGAAACTAAATTTGAGCAACCTGAACGATTGAAAAGTTTTTCAATTGTCGATGAATCTGAGACATTTGGTAGAGACTATGAAAGGAATATACTAGTAAGCCAGTTAGTGAGTGAGAATAGTGAAGAAAGGAAGAAGCCTCTTGTCATATCTATTGTAGAACCATTTGTACAAATCACGGTTGCCAAAGCCATCCTTGAGGGTCTTAAAGTAAAATACCCAGAGTCAAATGAGTTGGAAACTTATGTTCAACATATATCTGACTCTATTCGAGGGAAGAAGTTCCTTCTTGTCCTAGATGATGTTTGGGACTCAGACCATAGAAAGTGGGAGCCCTTCTTGGCAACATTACACAGTGGTGCCTCAGGGAGTAGAATTTTGGTCACGACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

284

Amino Acids

32.94

Weight (kDa)

5.74

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	6 - 95	6e-24	Rx N-terminal domain
NB-ARC	PF00931	205 - 284	2e-09	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31070
fragaria_vesca	FvH4_6g27030
malus_domestica	MD09G1232700.v1.1 MD17G1233500.v1.1
prunus_persica	Prupe.3G124900_v2.0.a1 Prupe.3G124900_v2.0.a1 Prupe.3G124900_v2.0.a1
pyrus_communis	pycom09g15910 pycom17g23660
rosa_chinensis	RchiOBHm_Chr2g0128901
rosa_laevigata	RLG00000019040 RLG00000027864
rosa_multiflora	Rmu_sc0001643.1_g000009
rosa_roxburghii	Rroxscaffold_2G00115090
rosa_rugosa	Rorug02G0282400 Rorug02G0282500 Rorug02G0282600
rosa_samantha	Rh2AG335000 Rh2BG343100 Rh2CG321900 Rh2DG359500
rosa_wichuraiana	Rw0G015460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	450
AccB1I	GGYRCC	1 cut(s)	821
AccB7I	CCANNNNNTGG	1 cut(s)	61
AcoI	YGGCCR	1 cut(s)	352
AcsI	RAATTY	3 cut(s)	443, 473, 837
AcuI	CTGAAG	1 cut(s)	27
AdeI	CACNNNGTG	1 cut(s)	852
AfaI	GTAC	3 cut(s)	221, 303, 633
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	6 cut(s)	137, 409, 461, 496, 507, 713
AhlI	ACTAGT	2 cut(s)	79, 556
AjiI	CACGTC	1 cut(s)	852
AleI	CACNNNNGTG	1 cut(s)	819
AluBI	AGCT	3 cut(s)	131, 140, 422
AluI	AGCT	3 cut(s)	131, 140, 422
Alw21I	GWGCWC	1 cut(s)	147
Alw26I	GTCTC	4 cut(s)	70, 181, 518, 531
Ama87I	CYCGRG	1 cut(s)	146
AoxI	GGCC	2 cut(s)	177, 352
ApoI	RAATTY	3 cut(s)	443, 473, 837
Asp700I	GAANNNNTTC	2 cut(s)	132, 743
AsuHPI	GGTGA	1 cut(s)	299
AvaI	CYCGRG	1 cut(s)	146
AxyI	CCTNAGG	1 cut(s)	826
BalI	TGGCCA	1 cut(s)	354
BanI	GGYRCC	1 cut(s)	821
BanII	GRGCYC	1 cut(s)	798
Bbv12I	GWGCWC	1 cut(s)	147
BccI	CCATC	2 cut(s)	53, 662
BciVI	GTATCC	1 cut(s)	28
BcoDI	GTCTC	4 cut(s)	70, 181, 518, 531
BcuI	ACTAGT	2 cut(s)	79, 556
BfaI	CTAG	3 cut(s)	80, 557, 758
BfuI	GTATCC	1 cut(s)	28
BmeT110I	CYCGRG	1 cut(s)	146
BmgBI	CACGTC	1 cut(s)	852
BmiI	GGNNCC	3 cut(s)	43, 795, 823
BmsI	GCATC	1 cut(s)	142
BpuEI	CTTGAG	1 cut(s)	680
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	565
Bse21I	CCTNAGG	1 cut(s)	826
Bse3DI	GCAATG	1 cut(s)	384
BseGI	GGATG	2 cut(s)	157, 654
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	4 cut(s)	377, 513, 789, 840
BseNI	ACTGG	1 cut(s)	565
BseRI	GAGGAG	1 cut(s)	175
BshFI	GGCC	2 cut(s)	179, 354
BshNI	GGYRCC	1 cut(s)	821
BsiHKAI	GWGCWC	1 cut(s)	147
BsiHKCI	CYCGRG	1 cut(s)	146
BsiWI	CGTACG	1 cut(s)	219
BslFI	GGGAC	1 cut(s)	785
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	4 cut(s)	70, 181, 518, 531
BsmBI	CGTCTC	1 cut(s)	181
BsmFI	GGGAC	1 cut(s)	785
BsnI	GGCC	2 cut(s)	179, 354
BsoBI	CYCGRG	1 cut(s)	146
Bsp1286I	GDGCHC	2 cut(s)	147, 798
Bsp1407I	TGTACA	1 cut(s)	631
BspANI	GGCC	2 cut(s)	179, 354
BspCNI	CTCAG	4 cut(s)	376, 514, 788, 839
BspHI	TCATGA	1 cut(s)	430
BspLI	GGNNCC	3 cut(s)	43, 795, 823
BspT107I	GGYRCC	1 cut(s)	821
BsrDI	GCAATG	1 cut(s)	384
BsrGI	TGTACA	1 cut(s)	631
BsrI	ACTGG	1 cut(s)	565
Bst4CI	ACNGT	2 cut(s)	643, 818
BstAUI	TGTACA	1 cut(s)	631
BstC8I	GCNNGC	1 cut(s)	194
BstDEI	CTNAG	5 cut(s)	306, 363, 522, 775, 826
BstF5I	GGATG	2 cut(s)	157, 654
BstMAI	GTCTC	4 cut(s)	70, 181, 518, 531
BstMWI	GCNNNNNNNGC	1 cut(s)	137
Bsu36I	CCTNAGG	1 cut(s)	826
BsuI	GTATCC	1 cut(s)	28
BsuRI	GGCC	2 cut(s)	179, 354
BtrI	CACGTC	1 cut(s)	852
BtsCI	GGATG	2 cut(s)	157, 654
BtsIMutI	CAGTG	1 cut(s)	823
Cac8I	GCNNGC	1 cut(s)	194
CciI	TCATGA	1 cut(s)	430
CseI	GACGC	1 cut(s)	198
Csp6I	GTAC	3 cut(s)	220, 302, 632
CviAII	CATG	1 cut(s)	431
CviQI	GTAC	3 cut(s)	220, 302, 632
DdeI	CTNAG	5 cut(s)	306, 363, 522, 775, 826
DraIII	CACNNNGTG	1 cut(s)	852
EaeI	YGGCCR	1 cut(s)	352
Eco24I	GRGCYC	1 cut(s)	798
Eco57I	CTGAAG	1 cut(s)	27
Eco81I	CCTNAGG	1 cut(s)	826
Eco88I	CYCGRG	1 cut(s)	146
EcoT38I	GRGCYC	1 cut(s)	798
Esp3I	CGTCTC	1 cut(s)	181
FaeI	CATG	1 cut(s)	434
FalI	AAGNNNNNCTT	2 cut(s)	642, 674
FaqI	GGGAC	1 cut(s)	785
FatI	CATG	1 cut(s)	430
FokI	GGATG	2 cut(s)	164, 641
FriOI	GRGCYC	1 cut(s)	798
FspBI	CTAG	3 cut(s)	80, 557, 758
HaeIII	GGCC	2 cut(s)	179, 354
HgaI	GACGC	1 cut(s)	198
Hin1II	CATG	1 cut(s)	434
HinfI	GANTC	5 cut(s)	427, 518, 686, 725, 773
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	6 cut(s)	7, 207, 366, 523, 724, 778
Hpy188III	TCNNGA	6 cut(s)	125, 262, 380, 431, 458, 847
Hpy8I	GTNNAC	1 cut(s)	241
Hpy99I	CGWCG	2 cut(s)	381, 853
HpyAV	CCTTC	6 cut(s)	31, 166, 307, 343, 758, 808
HpyCH4III	ACNGT	2 cut(s)	643, 818
HpyCH4IV	ACGT	3 cut(s)	72, 183, 851
HpyCH4V	TGCA	1 cut(s)	155
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpyF3I	CTNAG	5 cut(s)	306, 363, 522, 775, 826
HpySE526I	ACGT	3 cut(s)	72, 183, 851
Hsp92II	CATG	1 cut(s)	434
LmnI	GCTCC	1 cut(s)	793
LpnPI	CCDG	7 cut(s)	44, 178, 275, 498, 578, 696, 813
LweI	GCATC	1 cut(s)	142
MaeI	CTAG	3 cut(s)	80, 557, 758
MaeII	ACGT	3 cut(s)	72, 183, 851
MaeIII	GTNAC	3 cut(s)	358, 380, 844
MboII	GAAGA	5 cut(s)	43, 322, 599, 607, 751
MfeI	CAATTG	1 cut(s)	507
MhlI	GDGCHC	2 cut(s)	147, 798
MlsI	TGGCCA	1 cut(s)	354
MluCI	AATT	6 cut(s)	273, 369, 443, 473, 507, 837
MluNI	TGGCCA	1 cut(s)	354
MlyI	GAGTC	3 cut(s)	695, 719, 767
MmeI	TCCRAC	2 cut(s)	79, 678
Mox20I	TGGCCA	1 cut(s)	354
MroXI	GAANNNNTTC	2 cut(s)	132, 743
MscI	TGGCCA	1 cut(s)	354
MseI	TTAA	1 cut(s)	669
MslI	CAYNNNNRTG	2 cut(s)	389, 819
Msp20I	TGGCCA	1 cut(s)	354
MunI	CAATTG	1 cut(s)	507
MwoI	GCNNNNNNNGC	1 cut(s)	137
NlaIII	CATG	1 cut(s)	434
NlaIV	GGNNCC	3 cut(s)	43, 795, 823
NmuCI	GTSAC	3 cut(s)	358, 380, 844
OliI	CACNNNNGTG	1 cut(s)	819
PaeR7I	CTCGAG	1 cut(s)	146
PagI	TCATGA	1 cut(s)	430
PcsI	WCGNNNNNNNCGW	1 cut(s)	228
PdmI	GAANNNNTTC	2 cut(s)	132, 743
PfeI	GAWTC	2 cut(s)	427, 518
Pfl23II	CGTACG	1 cut(s)	219
PflMI	CCANNNNNTGG	1 cut(s)	61
PleI	GAGTC	3 cut(s)	694, 719, 767
PpsI	GAGTC	3 cut(s)	694, 719, 767
PsiI	TTATAA	1 cut(s)	450
PspLI	CGTACG	1 cut(s)	219
PspN4I	GGNNCC	3 cut(s)	43, 795, 823
PspXI	VCTCGAGB	1 cut(s)	146
PsrI	GAACNNNNNNTAC	2 cut(s)	615, 647
RsaI	GTAC	3 cut(s)	221, 303, 633
RsaNI	GTAC	3 cut(s)	220, 302, 632
RseI	CAYNNNNRTG	2 cut(s)	389, 819
SaqAI	TTAA	1 cut(s)	669
SchI	GAGTC	3 cut(s)	695, 719, 767
SduI	GDGCHC	2 cut(s)	147, 798
SfaNI	GCATC	1 cut(s)	142
Sfr274I	CTCGAG	1 cut(s)	146
SlaI	CTCGAG	1 cut(s)	146
SmiMI	CAYNNNNRTG	2 cut(s)	389, 819
SmlI	CTYRAG	2 cut(s)	146, 659
SmoI	CTYRAG	2 cut(s)	146, 659
SpeI	ACTAGT	2 cut(s)	79, 556
Sse9I	AATT	6 cut(s)	273, 369, 443, 473, 507, 837
SspMI	CTAG	3 cut(s)	80, 557, 758
TaaI	ACNGT	2 cut(s)	643, 818
TaiI	ACGT	3 cut(s)	75, 186, 854
TaqI	TCGA	4 cut(s)	126, 147, 513, 733
TasI	AATT	6 cut(s)	273, 369, 443, 473, 507, 837
TatI	WGTACW	1 cut(s)	631
TfiI	GAWTC	2 cut(s)	427, 518
Tru1I	TTAA	1 cut(s)	669
Tru9I	TTAA	1 cut(s)	669
TscAI	CASTG	1 cut(s)	823
TseFI	GTSAC	3 cut(s)	358, 380, 844
Tsp45I	GTSAC	3 cut(s)	358, 380, 844
TspDTI	ATGAA	5 cut(s)	419, 447, 480, 531, 558
TspRI	CASTG	1 cut(s)	823
Van91I	CCANNNNNTGG	1 cut(s)	61
XapI	RAATTY	3 cut(s)	443, 473, 837
XhoI	CTCGAG	1 cut(s)	146
XmnI	GAANNNNTTC	2 cut(s)	132, 743
XspI	CTAG	3 cut(s)	80, 557, 758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.