Rroxscaffold_2G00115090
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0008930
Physical Location & Seq
Forward (+)
41251883 .. 41254335
2453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00115090.1

Sequence Viewer

Length: 549 bp
ATGGGCATGAAGAGCGTCGGAGGAGAGATTGTGCAAGTCCAAGGAGGTCACATTGTTCGATCCACGGGCCGGAAAGACCGCCACAGCAAGGTTTGCACCGCAAAAGGCCCCAGGGACCGCCGCGTGCGGTTGTCAGCCCACACCGCCATCCAATTCTACGATGTTCAAGACCGGCTGGGCTACGACCGGCCCAGTAAAGCCGTGGATTGGCTCATCAAGAAGGCGAAAACCGCCATTGACAAGCTTGCAGAGCTTCCATCATGGCACCCAACTGGTGTTGCTGCTAATGCTACACAAGGTGAAGTTCCAAATGGGGCTGGAACCAGTGATATGGTGATCTCAGCTGAGCAATCTGAGTCATCTGGCTACAATTTCCAGCTCCAGAGACAAATTGGGGACAACACAGATCACAATGAATCAAGCTTCATCCCTCAATCTCTTGATTCTGACACCATAGCTGATACCATGAAGTCTTTCTTCCCTACAAGCTCAGCTGCCTCAACCATCAATTTCCAGAGCTACCCATCTGGTATAATCAAGAACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCP

Protein Analysis

182

Amino Acids

19.79

Weight (kDa)

8.69

Isoelectric Point (pI)

40.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 23 - 131 1.9e-33 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 264
AccII CGCG 1 cut(s) 123
AciI CCGC 7 cut(s) 79, 99, 118, 121, 127, 144, 231
AclWI GGATC 1 cut(s) 54
AdeI CACNNNGTG 1 cut(s) 299
AfiI CCNNNNNNNGG 3 cut(s) 69, 88, 207
AgsI TTSAA 1 cut(s) 167
AjnI CCWGG 1 cut(s) 110
AluBI AGCT 9 cut(s) 244, 253, 344, 379, 423, 458, 489, 494, 519
AluI AGCT 9 cut(s) 244, 253, 344, 379, 423, 458, 489, 494, 519
Alw26I GTCTC 1 cut(s) 379
AlwI GGATC 1 cut(s) 54
AoxI GGCC 3 cut(s) 67, 106, 188
ApeKI GCWGC 2 cut(s) 281, 494
Asp700I GAANNNNTTC 1 cut(s) 473
AspS9I GGNCC 4 cut(s) 67, 107, 115, 189
AsuHPI GGTGA 2 cut(s) 311, 346
AvaII GGWCC 1 cut(s) 115
BanI GGYRCC 1 cut(s) 264
BbvI GCAGC 2 cut(s) 268, 481
BccI CCATC 4 cut(s) 155, 265, 512, 532
BceAI ACGGC 1 cut(s) 185
BciT130I CCWGG 1 cut(s) 112
BcoDI GTCTC 1 cut(s) 379
BisI GCNGC 3 cut(s) 121, 282, 495
BlpI GCTNAGC 2 cut(s) 345, 490
BlsI GCNGC 3 cut(s) 122, 283, 496
Bme1390I CCNGG 1 cut(s) 112
Bme18I GGWCC 1 cut(s) 115
BmgT120I GGNCC 4 cut(s) 67, 107, 115, 189
BmiI GGNNCC 4 cut(s) 109, 116, 266, 322
BmrFI CCNGG 1 cut(s) 112
BmrI ACTGGG 1 cut(s) 186
BmuI ACTGGG 1 cut(s) 186
BpmI CTGGAG 1 cut(s) 365
Bpu1102I GCTNAGC 2 cut(s) 345, 490
BsaJI CCNNGG 5 cut(s) 40, 63, 110, 111, 201
BsaXI ACNNNNNCTCC 2 cut(s) 15, 45
Bsc4I CCNNNNNNNGG 3 cut(s) 69, 88, 207
Bse118I RCCGGY 2 cut(s) 171, 186
Bse1I ACTGG 3 cut(s) 192, 277, 324
BseBI CCWGG 1 cut(s) 112
BseDI CCNNGG 5 cut(s) 40, 63, 110, 111, 201
BseGI GGATG 2 cut(s) 147, 426
BseLI CCNNNNNNNGG 3 cut(s) 69, 88, 207
BseMII CTCAG 4 cut(s) 336, 345, 354, 504
BseNI ACTGG 3 cut(s) 192, 277, 324
BseRI GAGGAG 1 cut(s) 36
BseXI GCAGC 2 cut(s) 268, 481
BseYI CCCAGC 1 cut(s) 175
Bsh1236I CGCG 1 cut(s) 123
Bsh1285I CGRYCG 1 cut(s) 187
BshFI GGCC 3 cut(s) 69, 108, 190
BshNI GGYRCC 1 cut(s) 264
BsiEI CGRYCG 1 cut(s) 187
BsiSI CCGG 3 cut(s) 70, 172, 187
BslFI GGGAC 2 cut(s) 128, 410
BslI CCNNNNNNNGG 3 cut(s) 69, 88, 207
BsmAI GTCTC 1 cut(s) 379
BsmFI GGGAC 2 cut(s) 128, 410
BsnI GGCC 3 cut(s) 69, 108, 190
Bsp143I GATC 3 cut(s) 59, 336, 406
Bsp1720I GCTNAGC 2 cut(s) 345, 490
BspACI CCGC 7 cut(s) 79, 99, 118, 121, 127, 144, 231
BspANI GGCC 3 cut(s) 69, 108, 190
BspCNI CTCAG 4 cut(s) 337, 346, 353, 503
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 4 cut(s) 109, 116, 266, 322
BspPI GGATC 1 cut(s) 54
BspQI GCTCTTC 1 cut(s) 5
BspT107I GGYRCC 1 cut(s) 264
BsrFI RCCGGY 2 cut(s) 171, 186
BsrI ACTGG 3 cut(s) 192, 277, 324
BssAI RCCGGY 2 cut(s) 171, 186
BssECI CCNNGG 5 cut(s) 40, 63, 110, 111, 201
BssMI GATC 3 cut(s) 59, 336, 406
BssT1I CCWWGG 1 cut(s) 40
Bst2UI CCWGG 1 cut(s) 112
Bst6I CTCTTC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 93
BstC8I GCNNGC 2 cut(s) 125, 246
BstDEI CTNAG 4 cut(s) 340, 345, 354, 490
BstDSI CCRYGG 2 cut(s) 63, 201
BstF5I GGATG 2 cut(s) 147, 426
BstFNI CGCG 1 cut(s) 123
BstKTI GATC 3 cut(s) 62, 339, 409
BstMAI GTCTC 1 cut(s) 379
BstMBI GATC 3 cut(s) 59, 336, 406
BstMCI CGRYCG 1 cut(s) 187
BstMWI GCNNNNNNNGC 6 cut(s) 12, 93, 143, 230, 250, 287
BstNI CCWGG 1 cut(s) 112
BstSCI CCNGG 1 cut(s) 110
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 2 cut(s) 268, 481
BstXI CCANNNNNNTGG 1 cut(s) 331
BsuRI GGCC 3 cut(s) 69, 108, 190
BtgI CCRYGG 2 cut(s) 63, 201
BtsCI GGATG 2 cut(s) 147, 426
BtsIMutI CAGTG 1 cut(s) 331
Cac8I GCNNGC 2 cut(s) 125, 246
Cfr10I RCCGGY 2 cut(s) 171, 186
Cfr13I GGNCC 4 cut(s) 67, 107, 115, 189
CseI GACGC 1 cut(s) 4
CviAII CATG 3 cut(s) 7, 261, 466
DdeI CTNAG 4 cut(s) 340, 345, 354, 490
DpnI GATC 3 cut(s) 61, 338, 408
DpnII GATC 3 cut(s) 59, 336, 406
DraIII CACNNNGTG 1 cut(s) 299
Eam1104I CTCTTC 1 cut(s) 5
EarI CTCTTC 1 cut(s) 5
Eco130I CCWWGG 1 cut(s) 40
Eco47I GGWCC 1 cut(s) 115
EcoO109I RGGNCCY 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 110
EcoT14I CCWWGG 1 cut(s) 40
ErhI CCWWGG 1 cut(s) 40
FaeI CATG 3 cut(s) 10, 264, 469
FaiI YATR 6 cut(s) 8, 262, 332, 455, 467, 533
FalI AAGNNNNNCTT 2 cut(s) 461, 493
FaqI GGGAC 2 cut(s) 128, 410
FatI CATG 3 cut(s) 6, 260, 465
Fnu4HI GCNGC 3 cut(s) 121, 282, 495
FokI GGATG 2 cut(s) 134, 413
Fsp4HI GCNGC 3 cut(s) 121, 282, 495
GluI GCNGC 3 cut(s) 121, 282, 495
GsaI CCCAGC 1 cut(s) 179
GsuI CTGGAG 1 cut(s) 365
HaeIII GGCC 3 cut(s) 69, 108, 190
HapII CCGG 3 cut(s) 70, 172, 187
HgaI GACGC 1 cut(s) 4
Hin1II CATG 3 cut(s) 10, 264, 469
HindIII AAGCTT 2 cut(s) 242, 421
HinfI GANTC 3 cut(s) 356, 416, 443
HpaII CCGG 3 cut(s) 70, 172, 187
HphI GGTGA 2 cut(s) 311, 346
Hpy188I TCNGA 3 cut(s) 20, 355, 448
Hpy188III TCNNGA 6 cut(s) 167, 217, 382, 440, 514, 538
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 1 cut(s) 214
HpyCH4V TGCA 3 cut(s) 34, 96, 248
HpyF10VI GCNNNNNNNGC 6 cut(s) 12, 93, 143, 230, 250, 287
HpyF3I CTNAG 4 cut(s) 340, 345, 354, 490
Hsp92II CATG 3 cut(s) 10, 264, 469
Kzo9I GATC 3 cut(s) 59, 336, 406
LguI GCTCTTC 1 cut(s) 5
LmnI GCTCC 1 cut(s) 384
Lsp1109I GCAGC 2 cut(s) 268, 481
MaeIII GTNAC 1 cut(s) 47
MalI GATC 3 cut(s) 61, 338, 408
MboI GATC 3 cut(s) 59, 336, 406
MboII GAAGA 2 cut(s) 22, 469
MluCI AATT 4 cut(s) 152, 370, 390, 508
MlyI GAGTC 1 cut(s) 365
MnlI CCTC 4 cut(s) 14, 38, 441, 508
MroXI GAANNNNTTC 1 cut(s) 473
MspA1I CMGCKG 2 cut(s) 344, 494
MspI CCGG 3 cut(s) 70, 172, 187
MspR9I CCNGG 1 cut(s) 112
MvaI CCWGG 1 cut(s) 112
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 6 cut(s) 12, 93, 143, 230, 250, 287
NdeII GATC 3 cut(s) 59, 336, 406
NlaIII CATG 3 cut(s) 10, 264, 469
NlaIV GGNNCC 4 cut(s) 109, 116, 266, 322
NmuCI GTSAC 1 cut(s) 47
PasI CCCWGGG 1 cut(s) 111
PciSI GCTCTTC 1 cut(s) 5
PdmI GAANNNNTTC 1 cut(s) 473
PfeI GAWTC 2 cut(s) 416, 443
PkrI GCNGC 3 cut(s) 122, 283, 496
PleI GAGTC 1 cut(s) 364
PpsI GAGTC 1 cut(s) 364
Psp6I CCWGG 1 cut(s) 110
PspFI CCCAGC 1 cut(s) 175
PspGI CCWGG 1 cut(s) 110
PspN4I GGNNCC 4 cut(s) 109, 116, 266, 322
PspPI GGNCC 4 cut(s) 67, 107, 115, 189
PvuII CAGCTG 2 cut(s) 344, 494
SapI GCTCTTC 1 cut(s) 5
SatI GCNGC 3 cut(s) 121, 282, 495
Sau3AI GATC 3 cut(s) 59, 336, 406
Sau96I GGNCC 4 cut(s) 67, 107, 115, 189
SchI GAGTC 1 cut(s) 365
ScrFI CCNGG 1 cut(s) 112
SinI GGWCC 1 cut(s) 115
Sse9I AATT 4 cut(s) 152, 370, 390, 508
SsiI CCGC 7 cut(s) 79, 99, 118, 121, 127, 144, 231
StyD4I CCNGG 1 cut(s) 110
StyI CCWWGG 1 cut(s) 40
TaqI TCGA 1 cut(s) 58
TasI AATT 4 cut(s) 152, 370, 390, 508
TauI GCSGC 1 cut(s) 123
TfiI GAWTC 2 cut(s) 416, 443
TscAI CASTG 1 cut(s) 331
TseFI GTSAC 1 cut(s) 47
TseI GCWGC 2 cut(s) 281, 494
Tsp45I GTSAC 1 cut(s) 47
TspDTI ATGAA 4 cut(s) 23, 415, 429, 482
TspRI CASTG 1 cut(s) 331
VpaK11BI GGWCC 1 cut(s) 115
XcmI CCANNNNNNNNNTGG 2 cut(s) 199, 389
XmnI GAANNNNTTC 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.