MD09G1232700.v1.1
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0008930
Physical Location & Seq
Reverse (-)
29080345 .. 29082126
1782 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1232700.v1.1.491

Sequence Viewer

Length: 1050 bp
ATGGGAATGAAGGGCTGTGGTGGAGAGATTGTGCAAGTCCAGGGCGGCCACATTGTTCGATCCACCGGACGCAAAGATCGTCACAGCAAGGTTTACACCGCCAAAGGCCCCAGAGACCGCCGTGTCCGGTTGTCCGCCCACACTGCCATCCAATTCTACGATGTTCAAGACCGTCTTGGATATGATAGACCCAGTAAAGCCGTCGACTGGCTCATCAAGAAAGCCAAATCTTCCATTGACAAGCTTGCTGAGCTTCCACCTTGGCATCCTATCACTACTAGTAACCATGCTGCCAAGGCTGATGATCCGTTTCGATCATCGAATCCAAATCCAAATCAAAATCCAAATGAAATGGTAATTGCAGCAGCTGAGCAGCAGTCAGAGTCCTCCGCCGGCTACAACTTTGACTTTGAGCTCCATAGGCAAAGGCAATCAGACAACGAATCGAACTTCAACATTCCGCCATCTCTGGACTCAGACAACATAGCTGACACTATGAAATCCTTCTTCCCCACAAACACTAGTAGCAACGCTGCTGCTGCTTCCTCCGTCGTCGATTTCCAAAGCTATGCACCCGATCCCCATCTTATTTCAACAACCACCCAAGACCTCGGCCTCTCTCTCCACTCTTTCCAAGACCAAAGCCTAAATATTCATCACAATCACACTCATACCCAGCAGTCCTCTCAAACCCTTTTCGCTGCCGCAATGGGAATTGGACTTGACTCCTCCAGTTATCAGAGAATGGTGGCATGGAGCAATGAAAACAGAGGACTTGATGGTGGCTTTGTATTCAACTCACACTCACACTCATATGCTCAGCCTCAGCCTCACCACCATGGGGGTACCCTTCAGTCCAGTTTTACGCCATCAGTTTCCGCCCGTGCTTGGCAGCAGCAGCAGCAGCACTCTTCAATCTTTGGCACCCGCTTCGGTGCCTCTAATGGTAGCTCGCCTGTCTTCTGCATTCAAGGAGAGGAGGCTGAGAACGGTGTTGTTTCAGATCGAACGGCTTCCACTTCCTCTCCCAATTCCACCCGCCAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCP

Protein Analysis

350

Amino Acids

38.24

Weight (kDa)

6.65

Isoelectric Point (pI)

50.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 23 - 122 7.3e-31 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 122
Acc65I GGTACC 1 cut(s) 845
AccB1I GGYRCC 3 cut(s) 845, 923, 935
AccI GTMKAC 1 cut(s) 204
AclWI GGATC 3 cut(s) 54, 299, 572
AcoI YGGCCR 1 cut(s) 46
AcuI CTGAAG 1 cut(s) 836
AfaI GTAC 1 cut(s) 847
AfiI CCNNNNNNNGG 3 cut(s) 207, 841, 888
AgsI TTSAA 6 cut(s) 167, 454, 594, 796, 915, 971
AhlI ACTAGT 2 cut(s) 278, 521
AjnI CCWGG 1 cut(s) 39
AluBI AGCT 8 cut(s) 244, 253, 368, 415, 488, 567, 951, 1045
AluI AGCT 8 cut(s) 244, 253, 368, 415, 488, 567, 951, 1045
Alw21I GWGCWC 1 cut(s) 417
Alw26I GTCTC 1 cut(s) 108
AlwI GGATC 3 cut(s) 54, 299, 572
AlwNI CAGNNNCTG 1 cut(s) 368
AoxI GGCC 3 cut(s) 46, 106, 613
Asp700I GAANNNNTTC 2 cut(s) 503, 1012
Asp718I GGTACC 1 cut(s) 845
AspS9I GGNCC 1 cut(s) 107
AsuHPI GGTGA 1 cut(s) 824
BanI GGYRCC 3 cut(s) 845, 923, 935
BanII GRGCYC 1 cut(s) 417
BbsI GAAGAC 1 cut(s) 952
Bbv12I GWGCWC 1 cut(s) 417
BbvCI CCTCAGC 1 cut(s) 825
BccI CCATC 5 cut(s) 155, 472, 591, 773, 877
BceAI ACGGC 3 cut(s) 105, 185, 1026
BcgI CGANNNNNNTGC 2 cut(s) 913, 947
BciT130I CCWGG 1 cut(s) 41
BcoDI GTCTC 1 cut(s) 108
BcuI ACTAGT 2 cut(s) 278, 521
BfaI CTAG 2 cut(s) 279, 522
BlpI GCTNAGC 3 cut(s) 249, 369, 819
Bme1390I CCNGG 1 cut(s) 41
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 4 cut(s) 109, 847, 925, 937
BmrFI CCNGG 1 cut(s) 41
BmrI ACTGGG 1 cut(s) 186
BmsI GCATC 1 cut(s) 274
BmuI ACTGGG 1 cut(s) 186
BpiI GAAGAC 1 cut(s) 952
BpmI CTGGAG 1 cut(s) 715
Bpu10I CCTNAGC 1 cut(s) 825
Bpu1102I GCTNAGC 3 cut(s) 249, 369, 819
BsaBI GATNNNNATC 1 cut(s) 582
BsaI GGTCTC 1 cut(s) 108
BsaJI CCNNGG 5 cut(s) 40, 260, 294, 610, 838
BsaWI WCCGGW 2 cut(s) 65, 126
BsaXI ACNNNNNCTCC 4 cut(s) 15, 45, 1009, 1039
Bsc4I CCNNNNNNNGG 3 cut(s) 207, 841, 888
Bse118I RCCGGY 1 cut(s) 392
Bse1I ACTGG 4 cut(s) 192, 212, 732, 858
Bse3DI GCAATG 2 cut(s) 714, 766
Bse8I GATNNNNATC 1 cut(s) 582
BseBI CCWGG 1 cut(s) 41
BseDI CCNNGG 5 cut(s) 40, 260, 294, 610, 838
BseGI GGATG 2 cut(s) 147, 265
BseJI GATNNNNATC 1 cut(s) 582
BseLI CCNNNNNNNGG 3 cut(s) 207, 841, 888
BseMI GCAATG 2 cut(s) 714, 766
BseMII CTCAG 6 cut(s) 240, 360, 489, 833, 839, 975
BseNI ACTGG 4 cut(s) 192, 212, 732, 858
BseRI GAGGAG 2 cut(s) 718, 992
BseYI CCCAGC 1 cut(s) 675
BshFI GGCC 3 cut(s) 48, 108, 615
BshNI GGYRCC 3 cut(s) 845, 923, 935
BsiHKAI GWGCWC 1 cut(s) 417
BsiSI CCGG 3 cut(s) 66, 127, 393
BslI CCNNNNNNNGG 3 cut(s) 207, 841, 888
BsmAI GTCTC 1 cut(s) 108
BsmI GAATGC 1 cut(s) 966
BsnI GGCC 3 cut(s) 48, 108, 615
Bso31I GGTCTC 1 cut(s) 108
Bsp1286I GDGCHC 1 cut(s) 417
Bsp143I GATC 6 cut(s) 59, 76, 304, 314, 577, 1003
Bsp1720I GCTNAGC 3 cut(s) 249, 369, 819
Bsp19I CCATGG 1 cut(s) 838
BspANI GGCC 3 cut(s) 48, 108, 615
BspCNI CTCAG 6 cut(s) 241, 361, 488, 832, 838, 976
BspLI GGNNCC 4 cut(s) 109, 847, 925, 937
BspPI GGATC 3 cut(s) 54, 299, 572
BspT107I GGYRCC 3 cut(s) 845, 923, 935
BspTNI GGTCTC 1 cut(s) 108
BsrDI GCAATG 2 cut(s) 714, 766
BsrFI RCCGGY 1 cut(s) 392
BsrI ACTGG 4 cut(s) 192, 212, 732, 858
BssAI RCCGGY 1 cut(s) 392
BssECI CCNNGG 5 cut(s) 40, 260, 294, 610, 838
BssMI GATC 6 cut(s) 59, 76, 304, 314, 577, 1003
BssT1I CCWWGG 3 cut(s) 260, 294, 838
Bst2UI CCWGG 1 cut(s) 41
Bst4CI ACNGT 2 cut(s) 173, 992
Bst6I CTCTTC 1 cut(s) 916
BstC8I GCNNGC 4 cut(s) 246, 394, 953, 1043
BstDEI CTNAG 6 cut(s) 249, 369, 475, 819, 825, 984
BstDSI CCRYGG 1 cut(s) 838
BstF5I GGATG 2 cut(s) 147, 265
BstKTI GATC 6 cut(s) 62, 79, 307, 317, 580, 1006
BstMAI GTCTC 1 cut(s) 108
BstMBI GATC 6 cut(s) 59, 76, 304, 314, 577, 1003
BstMWI GCNNNNNNNGC 8 cut(s) 143, 250, 296, 421, 539, 898, 901, 904
BstNI CCWGG 1 cut(s) 41
BstSCI CCNGG 1 cut(s) 39
BstV2I GAAGAC 1 cut(s) 952
BsuRI GGCC 3 cut(s) 48, 108, 615
BtgI CCRYGG 1 cut(s) 838
BtsCI GGATG 2 cut(s) 147, 265
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 141
Cac8I GCNNGC 4 cut(s) 246, 394, 953, 1043
CaiI CAGNNNCTG 1 cut(s) 368
Cfr10I RCCGGY 1 cut(s) 392
Cfr13I GGNCC 1 cut(s) 107
CseI GACGC 1 cut(s) 78
Csp6I GTAC 1 cut(s) 846
CviAII CATG 3 cut(s) 287, 753, 839
CviQI GTAC 1 cut(s) 846
DdeI CTNAG 6 cut(s) 249, 369, 475, 819, 825, 984
DpnI GATC 6 cut(s) 61, 78, 306, 316, 579, 1005
DpnII GATC 6 cut(s) 59, 76, 304, 314, 577, 1003
DrdI GACNNNNNNGTC 1 cut(s) 122
DseDI GACNNNNNNGTC 1 cut(s) 122
EaeI YGGCCR 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 916
EarI CTCTTC 1 cut(s) 916
EciI GGCGGA 4 cut(s) 124, 379, 450, 868
Ecl136II GAGCTC 1 cut(s) 415
Eco130I CCWWGG 3 cut(s) 260, 294, 838
Eco24I GRGCYC 1 cut(s) 417
Eco31I GGTCTC 1 cut(s) 108
Eco53kI GAGCTC 1 cut(s) 415
Eco57I CTGAAG 1 cut(s) 836
EcoICRI GAGCTC 1 cut(s) 415
EcoO109I RGGNCCY 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 39
EcoT14I CCWWGG 3 cut(s) 260, 294, 838
EcoT38I GRGCYC 1 cut(s) 417
ErhI CCWWGG 3 cut(s) 260, 294, 838
FaeI CATG 3 cut(s) 290, 756, 842
FalI AAGNNNNNCTT 2 cut(s) 159, 191
FatI CATG 3 cut(s) 286, 752, 838
FauI CCCGC 2 cut(s) 935, 1046
FauNDI CATATG 1 cut(s) 814
FblI GTMKAC 1 cut(s) 204
FokI GGATG 2 cut(s) 134, 252
FriOI GRGCYC 1 cut(s) 417
FspBI CTAG 2 cut(s) 279, 522
GsaI CCCAGC 1 cut(s) 679
GsuI CTGGAG 1 cut(s) 715
HaeIII GGCC 3 cut(s) 48, 108, 615
HapII CCGG 3 cut(s) 66, 127, 393
HgaI GACGC 1 cut(s) 78
Hin1II CATG 3 cut(s) 290, 756, 842
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HindIII AAGCTT 1 cut(s) 242
HinfI GANTC 5 cut(s) 322, 383, 443, 473, 725
HpaII CCGG 3 cut(s) 66, 127, 393
HphI GGTGA 1 cut(s) 824
Hpy166II GTNNAC 2 cut(s) 94, 205
Hpy188I TCNGA 5 cut(s) 382, 436, 478, 741, 1003
Hpy188III TCNNGA 3 cut(s) 167, 217, 470
Hpy8I GTNNAC 2 cut(s) 94, 205
Hpy99I CGWCG 3 cut(s) 206, 554, 557
HpyAV CCTTC 3 cut(s) 4, 514, 860
HpyCH4III ACNGT 2 cut(s) 173, 992
HpyCH4V TGCA 4 cut(s) 34, 362, 572, 966
HpyF10VI GCNNNNNNNGC 8 cut(s) 143, 250, 296, 421, 539, 898, 901, 904
HpyF3I CTNAG 6 cut(s) 249, 369, 475, 819, 825, 984
Hsp92II CATG 3 cut(s) 290, 756, 842
KpnI GGTACC 1 cut(s) 849
KroI GCCGGC 1 cut(s) 392
KroNI GCCGGC 1 cut(s) 394
Kzo9I GATC 6 cut(s) 59, 76, 304, 314, 577, 1003
LmnI GCTCC 2 cut(s) 420, 756
LweI GCATC 1 cut(s) 274
MaeI CTAG 2 cut(s) 279, 522
MaeIII GTNAC 2 cut(s) 80, 281
MalI GATC 6 cut(s) 61, 78, 306, 316, 579, 1005
MboI GATC 6 cut(s) 59, 76, 304, 314, 577, 1003
MboII GAAGA 4 cut(s) 222, 499, 903, 952
MhlI GDGCHC 1 cut(s) 417
MluCI AATT 4 cut(s) 152, 357, 714, 1030
MlyI GAGTC 3 cut(s) 392, 467, 719
MroNI GCCGGC 1 cut(s) 392
MroXI GAANNNNTTC 2 cut(s) 503, 1012
MslI CAYNNNNRTG 2 cut(s) 813, 837
MspA1I CMGCKG 1 cut(s) 368
MspI CCGG 3 cut(s) 66, 127, 393
MspR9I CCNGG 1 cut(s) 41
Mva1269I GAATGC 1 cut(s) 966
MvaI CCWGG 1 cut(s) 41
MwoI GCNNNNNNNGC 8 cut(s) 143, 250, 296, 421, 539, 898, 901, 904
NaeI GCCGGC 1 cut(s) 394
NcoI CCATGG 1 cut(s) 838
NdeI CATATG 1 cut(s) 814
NdeII GATC 6 cut(s) 59, 76, 304, 314, 577, 1003
NgoMIV GCCGGC 1 cut(s) 392
NlaIII CATG 3 cut(s) 290, 756, 842
NlaIV GGNNCC 4 cut(s) 109, 847, 925, 937
NmeAIII GCCGAG 1 cut(s) 591
NmuCI GTSAC 1 cut(s) 80
PcsI WCGNNNNNNNCGW 1 cut(s) 76
PctI GAATGC 1 cut(s) 966
PdiI GCCGGC 1 cut(s) 394
PdmI GAANNNNTTC 2 cut(s) 503, 1012
PfeI GAWTC 2 cut(s) 322, 443
PleI GAGTC 3 cut(s) 391, 467, 719
PpsI GAGTC 3 cut(s) 391, 467, 719
Psp124BI GAGCTC 1 cut(s) 417
Psp6I CCWGG 1 cut(s) 39
PspFI CCCAGC 1 cut(s) 675
PspGI CCWGG 1 cut(s) 39
PspN4I GGNNCC 4 cut(s) 109, 847, 925, 937
PspPI GGNCC 1 cut(s) 107
PstNI CAGNNNCTG 1 cut(s) 368
PvuII CAGCTG 1 cut(s) 368
RsaI GTAC 1 cut(s) 847
RsaNI GTAC 1 cut(s) 846
RseI CAYNNNNRTG 2 cut(s) 813, 837
SacI GAGCTC 1 cut(s) 417
SalI GTCGAC 1 cut(s) 203
Sau3AI GATC 6 cut(s) 59, 76, 304, 314, 577, 1003
Sau96I GGNCC 1 cut(s) 107
SchI GAGTC 3 cut(s) 392, 467, 719
ScrFI CCNGG 1 cut(s) 41
SduI GDGCHC 1 cut(s) 417
SfaNI GCATC 1 cut(s) 274
SmiMI CAYNNNNRTG 2 cut(s) 813, 837
SpeI ACTAGT 2 cut(s) 278, 521
Sse9I AATT 4 cut(s) 152, 357, 714, 1030
SspI AATATT 1 cut(s) 652
SspMI CTAG 2 cut(s) 279, 522
SstI GAGCTC 1 cut(s) 417
StyD4I CCNGG 1 cut(s) 39
StyI CCWWGG 3 cut(s) 260, 294, 838
TaaI ACNGT 2 cut(s) 173, 992
TaqI TCGA 7 cut(s) 58, 204, 313, 320, 446, 555, 1006
TasI AATT 4 cut(s) 152, 357, 714, 1030
TauI GCSGC 2 cut(s) 48, 707
TfiI GAWTC 2 cut(s) 322, 443
TscAI CASTG 1 cut(s) 148
TseFI GTSAC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 5 cut(s) 23, 363, 512, 644, 777
TspGWI ACGGA 2 cut(s) 297, 538
TspRI CASTG 1 cut(s) 148
XmiI GTMKAC 1 cut(s) 204
XmnI GAANNNNTTC 2 cut(s) 503, 1012
XspI CTAG 2 cut(s) 279, 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.