RLG00000019040
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0008930
Physical Location & Seq
Reverse (-)
45261463 .. 45263678
2216 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019040

Sequence Viewer

Length: 1095 bp
ATGGGCATGAAGAGCGTCGGAGGAGAGATTGTGCAAGTCCAAGGAGGTCACATTGTTAGATCCACCGGCCGGAAAGACCGCCACAGCAAGGTTTACACCGCAAAAGGCCCCAGGGACCGCCGCGTGCGGTTGTCAGCCCACACCGCCATCCAATTCTACGATGTTCAAGACCGGCTGGGCTACGACCGGCCCAGTAAAGCCGTGGATTGGCTCATCAAGAAGGCGAAAACCTCCATTGACAAGCTTGCAGAGCTTCCACCTTGGCACCCAACTGGTGTTGCTGCTAATGCTACACAAGGTGAAGTTCCAAATGGGGCTGGAAACAGTGATATGGTGATCTCAGCTGAGCAATCTGAGTCATCTGGCTACAATTTCCAGCTCCAGAGACAAATTGGGGACAACACAGATCACAATGAATCAAGCTTCATCCCTCAATCTCTTGATTCTGACGCCATAGCTGATACCATGAAGTCTTTCTTCCCTACAAGCTCAGCTGCCTCAACCATCAATTTCCAGAGCTACCCATCTGATATAATCTCAAGAACAACTAATCTGAACCCCAACCAAGACCTTGGCCTCTCTCTCCACTCCTTCCAAGACCAAGCCCTGATTCACCACACCCAGCAATCTCATCAGGACACCACTCACCACAACGATCAGATTCAAACCCTCTTCGCAGTGCCGGCCACGGCCGGGTTCGACTCCTCTGCTTATCAGAGGATGGTGGCATGGAGCAGCGACAGCAGCCATGAAAACAGAGGGTTTGTCTTCAACAACATGCCGGCGTTGCCGCATCAGCAAGCACTGATGGGGCAGCAGCAGAGCTCGTCGGCAGCTCCCACTTTTGCTCAGAGGGGTACCCTTCAGTCCAGTTTTACACCATCGATTCGTTCTTGGAGCGATGAAATTCAAATGGCTTCACAGAGAACGCAGCAGCACCCAGTTCATCACTCTTCCATTTTCGGCACAAGGTTTGCCTCTGATGGCCTCCCTGTGTTCTGCACTCCGACACGTATTCACGGTGACGATGCAGACAACAGTGTCGTTTCGGATCGCCCATCTTCTACTTCCTCTCCCAACTCCAAGCACCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCP

Protein Analysis

365

Amino Acids

39.94

Weight (kDa)

6.54

Isoelectric Point (pI)

50.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 23 - 129 5.9e-30 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1040
Acc65I GGTACC 1 cut(s) 857
AccB1I GGYRCC 2 cut(s) 264, 857
AccII CGCG 1 cut(s) 123
AciI CCGC 7 cut(s) 79, 99, 118, 121, 127, 144, 791
AclWI GGATC 2 cut(s) 54, 1059
AcoI YGGCCR 3 cut(s) 67, 684, 690
AcsI RAATTY 1 cut(s) 906
AcuI CTGAAG 1 cut(s) 848
AcyI GRCGYC 1 cut(s) 450
AdeI CACNNNGTG 1 cut(s) 299
AfaI GTAC 1 cut(s) 859
AfiI CCNNNNNNNGG 4 cut(s) 69, 88, 207, 693
AflIII ACRYGT 1 cut(s) 1010
AgsI TTSAA 4 cut(s) 167, 665, 772, 911
AjnI CCWGG 1 cut(s) 110
AjuI GAANNNNNNNTTGG 2 cut(s) 594, 626
Alw21I GWGCWC 1 cut(s) 827
Alw26I GTCTC 1 cut(s) 379
AlwI GGATC 2 cut(s) 54, 1059
AoxI GGCC 7 cut(s) 67, 106, 188, 574, 684, 690, 985
ApeKI GCWGC 9 cut(s) 281, 494, 735, 744, 814, 817, 833, 931, 934
ApoI RAATTY 1 cut(s) 906
Asp700I GAANNNNTTC 1 cut(s) 473
Asp718I GGTACC 1 cut(s) 857
AspS9I GGNCC 3 cut(s) 107, 115, 189
AsuC2I CCSGG 1 cut(s) 694
AsuHPI GGTGA 5 cut(s) 311, 346, 605, 638, 1034
AvaII GGWCC 1 cut(s) 115
BanI GGYRCC 2 cut(s) 264, 857
BanII GRGCYC 1 cut(s) 827
BbsI GAAGAC 1 cut(s) 760
Bbv12I GWGCWC 1 cut(s) 827
BbvI GCAGC 9 cut(s) 268, 481, 747, 756, 826, 829, 845, 943, 946
BccI CCATC 8 cut(s) 155, 512, 532, 715, 802, 889, 977, 1066
BceAI ACGGC 2 cut(s) 185, 705
BcgI CGANNNNNNTGC 2 cut(s) 689, 723
BciT130I CCWGG 1 cut(s) 112
BcnI CCSGG 1 cut(s) 694
BcoDI GTCTC 1 cut(s) 379
BlpI GCTNAGC 2 cut(s) 345, 490
Bme1390I CCNGG 2 cut(s) 112, 694
Bme18I GGWCC 1 cut(s) 115
BmgT120I GGNCC 3 cut(s) 107, 115, 189
BmiI GGNNCC 4 cut(s) 109, 116, 266, 859
BmrFI CCNGG 2 cut(s) 112, 694
BmrI ACTGGG 2 cut(s) 186, 935
BmsI GCATC 2 cut(s) 802, 1018
BmuI ACTGGG 2 cut(s) 186, 935
BpiI GAAGAC 1 cut(s) 760
BpmI CTGGAG 1 cut(s) 365
Bpu1102I GCTNAGC 2 cut(s) 345, 490
BpuEI CTTGAG 1 cut(s) 523
BpuMI CCSGG 1 cut(s) 694
Bsa29I ATCGAT 1 cut(s) 884
BsaAI YACGTR 1 cut(s) 1013
BsaHI GRCGYC 1 cut(s) 450
BsaJI CCNNGG 7 cut(s) 40, 110, 111, 201, 260, 571, 687
BsaXI ACNNNNNCTCC 4 cut(s) 15, 45, 1057, 1087
Bsc4I CCNNNNNNNGG 4 cut(s) 69, 88, 207, 693
Bse118I RCCGGY 5 cut(s) 65, 171, 186, 682, 781
Bse1I ACTGG 4 cut(s) 192, 277, 870, 941
BseBI CCWGG 1 cut(s) 112
BseCI ATCGAT 1 cut(s) 884
BseDI CCNNGG 7 cut(s) 40, 110, 111, 201, 260, 571, 687
BseGI GGATG 3 cut(s) 147, 426, 726
BseLI CCNNNNNNNGG 4 cut(s) 69, 88, 207, 693
BseMII CTCAG 5 cut(s) 336, 345, 354, 504, 863
BseNI ACTGG 4 cut(s) 192, 277, 870, 941
BseRI GAGGAG 2 cut(s) 36, 694
BseX3I CGGCCG 2 cut(s) 67, 690
BseXI GCAGC 9 cut(s) 268, 481, 747, 756, 826, 829, 845, 943, 946
BseYI CCCAGC 2 cut(s) 175, 621
BsgI GTGCAG 1 cut(s) 985
Bsh1236I CGCG 1 cut(s) 123
Bsh1285I CGRYCG 3 cut(s) 70, 187, 693
BshFI GGCC 7 cut(s) 69, 108, 190, 576, 686, 692, 987
BshNI GGYRCC 2 cut(s) 264, 857
BshVI ATCGAT 1 cut(s) 884
BsiEI CGRYCG 3 cut(s) 70, 187, 693
BsiHKAI GWGCWC 1 cut(s) 827
BsiSI CCGG 7 cut(s) 66, 70, 172, 187, 683, 693, 782
BslFI GGGAC 2 cut(s) 128, 410
BslI CCNNNNNNNGG 4 cut(s) 69, 88, 207, 693
BsmAI GTCTC 1 cut(s) 379
BsmFI GGGAC 2 cut(s) 128, 410
BsnI GGCC 7 cut(s) 69, 108, 190, 576, 686, 692, 987
Bsp1286I GDGCHC 1 cut(s) 827
Bsp143I GATC 5 cut(s) 59, 336, 406, 655, 1051
Bsp1720I GCTNAGC 2 cut(s) 345, 490
BspACI CCGC 7 cut(s) 79, 99, 118, 121, 127, 144, 791
BspANI GGCC 7 cut(s) 69, 108, 190, 576, 686, 692, 987
BspCNI CTCAG 5 cut(s) 337, 346, 353, 503, 862
BspDI ATCGAT 1 cut(s) 884
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 4 cut(s) 109, 116, 266, 859
BspPI GGATC 2 cut(s) 54, 1059
BspQI GCTCTTC 1 cut(s) 5
BspT107I GGYRCC 2 cut(s) 264, 857
BsrFI RCCGGY 5 cut(s) 65, 171, 186, 682, 781
BsrI ACTGG 4 cut(s) 192, 277, 870, 941
BssAI RCCGGY 5 cut(s) 65, 171, 186, 682, 781
BssECI CCNNGG 7 cut(s) 40, 110, 111, 201, 260, 571, 687
BssMI GATC 5 cut(s) 59, 336, 406, 655, 1051
BssNI GRCGYC 1 cut(s) 450
BssT1I CCWWGG 3 cut(s) 40, 260, 571
Bst2UI CCWGG 1 cut(s) 112
Bst4CI ACNGT 3 cut(s) 326, 1022, 1040
Bst6I CTCTTC 3 cut(s) 5, 677, 958
BstACI GRCGYC 1 cut(s) 450
BstBAI YACGTR 1 cut(s) 1013
BstC8I GCNNGC 5 cut(s) 125, 246, 684, 783, 801
BstDEI CTNAG 5 cut(s) 340, 345, 354, 490, 849
BstDSI CCRYGG 2 cut(s) 201, 687
BstF5I GGATG 3 cut(s) 147, 426, 726
BstFNI CGCG 1 cut(s) 123
BstKTI GATC 5 cut(s) 62, 339, 409, 658, 1054
BstMAI GTCTC 1 cut(s) 379
BstMBI GATC 5 cut(s) 59, 336, 406, 655, 1051
BstMCI CGRYCG 3 cut(s) 70, 187, 693
BstMWI GCNNNNNNNGC 9 cut(s) 12, 143, 250, 287, 683, 741, 744, 787, 796
BstNI CCWGG 1 cut(s) 112
BstNSI RCATGY 1 cut(s) 781
BstSCI CCNGG 2 cut(s) 110, 692
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 9 cut(s) 268, 481, 747, 756, 826, 829, 845, 943, 946
BstV2I GAAGAC 1 cut(s) 760
BstX2I RGATCY 1 cut(s) 59
BstXI CCANNNNNNTGG 1 cut(s) 572
BstYI RGATCY 1 cut(s) 59
BstZI CGGCCG 2 cut(s) 67, 690
Bsu15I ATCGAT 1 cut(s) 884
BsuRI GGCC 7 cut(s) 69, 108, 190, 576, 686, 692, 987
BsuTUI ATCGAT 1 cut(s) 884
BtgI CCRYGG 2 cut(s) 201, 687
BtgZI GCGATG 1 cut(s) 915
BtsCI GGATG 3 cut(s) 147, 426, 726
BtsI GCAGTG 1 cut(s) 684
BtsIMutI CAGTG 4 cut(s) 331, 684, 803, 1045
Cac8I GCNNGC 5 cut(s) 125, 246, 684, 783, 801
Cfr10I RCCGGY 5 cut(s) 65, 171, 186, 682, 781
Cfr13I GGNCC 3 cut(s) 107, 115, 189
ClaI ATCGAT 1 cut(s) 884
CseI GACGC 2 cut(s) 4, 458
Csp6I GTAC 1 cut(s) 858
CviAII CATG 5 cut(s) 7, 466, 729, 749, 778
CviQI GTAC 1 cut(s) 858
DdeI CTNAG 5 cut(s) 340, 345, 354, 490, 849
DpnI GATC 5 cut(s) 61, 338, 408, 657, 1053
DpnII GATC 5 cut(s) 59, 336, 406, 655, 1051
DraIII CACNNNGTG 1 cut(s) 299
DrdI GACNNNNNNGTC 1 cut(s) 1040
DseDI GACNNNNNNGTC 1 cut(s) 1040
EaeI YGGCCR 3 cut(s) 67, 684, 690
EagI CGGCCG 2 cut(s) 67, 690
Eam1104I CTCTTC 3 cut(s) 5, 677, 958
EarI CTCTTC 3 cut(s) 5, 677, 958
Ecl136II GAGCTC 1 cut(s) 825
EclXI CGGCCG 2 cut(s) 67, 690
Eco130I CCWWGG 3 cut(s) 40, 260, 571
Eco24I GRGCYC 1 cut(s) 827
Eco47I GGWCC 1 cut(s) 115
Eco52I CGGCCG 2 cut(s) 67, 690
Eco53kI GAGCTC 1 cut(s) 825
Eco57I CTGAAG 1 cut(s) 848
EcoICRI GAGCTC 1 cut(s) 825
EcoO109I RGGNCCY 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 110
EcoT14I CCWWGG 3 cut(s) 40, 260, 571
EcoT38I GRGCYC 1 cut(s) 827
ErhI CCWWGG 3 cut(s) 40, 260, 571
FaeI CATG 5 cut(s) 10, 469, 732, 752, 781
FaiI YATR 8 cut(s) 8, 332, 455, 467, 533, 730, 750, 779
FalI AAGNNNNNCTT 2 cut(s) 461, 493
FaqI GGGAC 2 cut(s) 128, 410
FatI CATG 5 cut(s) 6, 465, 728, 748, 777
FokI GGATG 3 cut(s) 134, 413, 733
FriOI GRGCYC 1 cut(s) 827
GsaI CCCAGC 2 cut(s) 179, 625
GsuI CTGGAG 1 cut(s) 365
HaeIII GGCC 7 cut(s) 69, 108, 190, 576, 686, 692, 987
HapII CCGG 7 cut(s) 66, 70, 172, 187, 683, 693, 782
HgaI GACGC 2 cut(s) 4, 458
Hin1I GRCGYC 1 cut(s) 450
Hin1II CATG 5 cut(s) 10, 469, 732, 752, 781
HindIII AAGCTT 2 cut(s) 242, 421
HinfI GANTC 7 cut(s) 356, 416, 443, 610, 661, 701, 886
HpaII CCGG 7 cut(s) 66, 70, 172, 187, 683, 693, 782
HphI GGTGA 5 cut(s) 311, 346, 605, 638, 1034
Hpy166II GTNNAC 1 cut(s) 94
Hpy188III TCNNGA 7 cut(s) 167, 217, 382, 440, 514, 540, 635
Hpy8I GTNNAC 1 cut(s) 94
Hpy99I CGWCG 2 cut(s) 20, 832
HpyAV CCTTC 3 cut(s) 214, 601, 872
HpyCH4III ACNGT 3 cut(s) 326, 1022, 1040
HpyCH4IV ACGT 1 cut(s) 1012
HpyCH4V TGCA 4 cut(s) 34, 248, 1002, 1031
HpyF10VI GCNNNNNNNGC 9 cut(s) 12, 143, 250, 287, 683, 741, 744, 787, 796
HpyF3I CTNAG 5 cut(s) 340, 345, 354, 490, 849
HpySE526I ACGT 1 cut(s) 1012
Hsp92I GRCGYC 1 cut(s) 450
Hsp92II CATG 5 cut(s) 10, 469, 732, 752, 781
KpnI GGTACC 1 cut(s) 861
KroI GCCGGC 2 cut(s) 682, 781
KroNI GCCGGC 2 cut(s) 684, 783
Kzo9I GATC 5 cut(s) 59, 336, 406, 655, 1051
LguI GCTCTTC 1 cut(s) 5
LmnI GCTCC 4 cut(s) 384, 732, 841, 897
Lsp1109I GCAGC 9 cut(s) 268, 481, 747, 756, 826, 829, 845, 943, 946
LweI GCATC 2 cut(s) 802, 1018
MaeII ACGT 1 cut(s) 1012
MaeIII GTNAC 2 cut(s) 47, 1022
MalI GATC 5 cut(s) 61, 338, 408, 657, 1053
MboI GATC 5 cut(s) 59, 336, 406, 655, 1051
MboII GAAGA 6 cut(s) 22, 469, 664, 760, 945, 1053
MflI RGATCY 1 cut(s) 59
MhlI GDGCHC 1 cut(s) 827
MluCI AATT 5 cut(s) 152, 370, 390, 508, 906
MlyI GAGTC 2 cut(s) 365, 695
MmeI TCCRAC 1 cut(s) 1031
MroNI GCCGGC 2 cut(s) 682, 781
MroXI GAANNNNTTC 1 cut(s) 473
MspA1I CMGCKG 2 cut(s) 344, 494
MspI CCGG 7 cut(s) 66, 70, 172, 187, 683, 693, 782
MspR9I CCNGG 2 cut(s) 112, 694
MvaI CCWGG 1 cut(s) 112
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 9 cut(s) 12, 143, 250, 287, 683, 741, 744, 787, 796
NaeI GCCGGC 2 cut(s) 684, 783
NciI CCSGG 1 cut(s) 694
NdeII GATC 5 cut(s) 59, 336, 406, 655, 1051
NgoMIV GCCGGC 2 cut(s) 682, 781
NlaIII CATG 5 cut(s) 10, 469, 732, 752, 781
NlaIV GGNNCC 4 cut(s) 109, 116, 266, 859
NmuCI GTSAC 2 cut(s) 47, 1022
NspI RCATGY 1 cut(s) 781
PasI CCCWGGG 1 cut(s) 111
PciSI GCTCTTC 1 cut(s) 5
PdiI GCCGGC 2 cut(s) 684, 783
PdmI GAANNNNTTC 1 cut(s) 473
PfeI GAWTC 5 cut(s) 416, 443, 610, 661, 886
PleI GAGTC 2 cut(s) 364, 695
PpsI GAGTC 2 cut(s) 364, 695
Ppu21I YACGTR 1 cut(s) 1013
Psp124BI GAGCTC 1 cut(s) 827
Psp6I CCWGG 1 cut(s) 110
PspFI CCCAGC 2 cut(s) 175, 621
PspGI CCWGG 1 cut(s) 110
PspN4I GGNNCC 4 cut(s) 109, 116, 266, 859
PspPI GGNCC 3 cut(s) 107, 115, 189
PsuI RGATCY 1 cut(s) 59
PvuII CAGCTG 2 cut(s) 344, 494
RsaI GTAC 1 cut(s) 859
RsaNI GTAC 1 cut(s) 858
SacI GAGCTC 1 cut(s) 827
SapI GCTCTTC 1 cut(s) 5
Sau3AI GATC 5 cut(s) 59, 336, 406, 655, 1051
Sau96I GGNCC 3 cut(s) 107, 115, 189
SchI GAGTC 2 cut(s) 365, 695
ScrFI CCNGG 2 cut(s) 112, 694
SduI GDGCHC 1 cut(s) 827
SfaNI GCATC 2 cut(s) 802, 1018
SinI GGWCC 1 cut(s) 115
SmlI CTYRAG 1 cut(s) 538
SmoI CTYRAG 1 cut(s) 538
Sse9I AATT 5 cut(s) 152, 370, 390, 508, 906
SsiI CCGC 7 cut(s) 79, 99, 118, 121, 127, 144, 791
SstI GAGCTC 1 cut(s) 827
StyD4I CCNGG 2 cut(s) 110, 692
StyI CCWWGG 3 cut(s) 40, 260, 571
TaaI ACNGT 3 cut(s) 326, 1022, 1040
TaiI ACGT 1 cut(s) 1015
TaqI TCGA 2 cut(s) 699, 884
TasI AATT 5 cut(s) 152, 370, 390, 508, 906
TauI GCSGC 2 cut(s) 123, 793
TfiI GAWTC 5 cut(s) 416, 443, 610, 661, 886
TscAI CASTG 4 cut(s) 331, 684, 810, 1045
TseFI GTSAC 2 cut(s) 47, 1022
TseI GCWGC 9 cut(s) 281, 494, 735, 744, 814, 817, 833, 931, 934
Tsp45I GTSAC 2 cut(s) 47, 1022
TspDTI ATGAA 7 cut(s) 23, 415, 429, 482, 765, 918, 935
TspRI CASTG 4 cut(s) 331, 684, 810, 1045
VpaK11BI GGWCC 1 cut(s) 115
XapI RAATTY 1 cut(s) 906
XceI RCATGY 1 cut(s) 781
XcmI CCANNNNNNNNNTGG 2 cut(s) 199, 389
XmnI GAANNNNTTC 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.