pycom09g15910
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0008930
Physical Location & Seq
Forward (+)
15995906 .. 15997392
1487 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g15910.1

Sequence Viewer

Length: 1254 bp
ATGTCTGATTTGCTACAATTTACCATATGTGTGGCTTTTTGTAGCGTTTATTGGGGTTTGGAATCTGGATGGAGATTGCAATGCAGAGTTTTGGGGATCGGCGGCAGCAGCACAAGTATCAGAACTGTGACAGCAACGGCCACAGCTAGAGTAAAAGCAACGCAACCAATACAATTTGCAGAAAATAATGCAAAACAAAAAGAGAGAATAATTACAATGGGAATGAAGGGCTGTGGTGGAGAGATTGTGCAAGTCCAGGGCGGCCACATTGTTCGATCCACCGGACGCAAAGATCGTCACAGCAAGGTTTACACCGCCAAAGGCCCCAGAGACCGCCGTGTCCGGTTGTCCGCCCACACTGCCATCCAATTCTACGATGTTCAAGACCGTCTTGGATATGATCGACCCAGTAAAGCCGTCGACTGGCTCATCAGGAAAGCCAAATCTTCCATTGACAAGCTCGCTGAGCTTCCACCTTGGCATCCTATCACTACTAGTAACCATGCTGCCGAGGCTGATGATCCGTTTAGATCATCGAATCCAAATCCAAATGAAATGGTAATTGCAGCAGCTGAGCCGCAGTCAGAGTCCTCAGCCGGCTACAACTTTAACTTTGAGCTCCATAGGCAAAGGCAATCAGACAACGATTCGAACTTCAACATTCCGCCATCTCTGGACTCAGACAATATAGCTGACACTATGAAATCCTTCTTCCCCACAAACACTAGTAGCAACGCCGCTGCTGCTTCCTCCATCGTCGATTTCCAAAGCTATGCACCCGATCCCCATCTTATTTCAACAACCACCCAAGACCTCGGCCTCTCTCTCCACTCCTTCCAAGACCAAAGCCTAAATATTCATCACAATCACACACATACCCAGCAGTCCTCTCAAACCCTTTTCGCCGCCGCAATGGGAATTGGACTTGACTCCTCCAGTTATCAGAGAATGGTGGCATGGAGCAATGAAAACAGAGGACTTGATGGTGGCTTTGTATTCAACTCACACTCACACTCATATGCTCAGCCTCAGCCTCACCACCATGGGGGTACCCTTCAGTCCAGTTTTACGCCATCAGTTTCCGCCCGCGCTTGGCAGCAGCAGCAGCAGCACTCTTCAATCTTCGGTACCCGCTTCGGCGCCTCTGATGGTAGCTCGCCTGTCTTCTGCATTCAAGGAGAGGAGGCTGAGAACGGTGTTGTTTCAGATCGAACGGCTTCCACTTCCTCTCCCAATTCCACCCGCCAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCP

Protein Analysis

418

Amino Acids

45.69

Weight (kDa)

7.02

Isoelectric Point (pI)

47.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 95 - 182 9.4e-31 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 338
Acc65I GGTACC 2 cut(s) 1049, 1127
AccB1I GGYRCC 3 cut(s) 1049, 1127, 1139
AccI GTMKAC 1 cut(s) 420
AccII CGCG 1 cut(s) 1089
AclWI GGATC 4 cut(s) 104, 270, 515, 776
AcoI YGGCCR 2 cut(s) 138, 262
AcuI CTGAAG 1 cut(s) 1040
AcyI GRCGYC 1 cut(s) 1140
AfaI GTAC 2 cut(s) 1051, 1129
AfiI CCNNNNNNNGG 3 cut(s) 423, 1045, 1092
AgsI TTSAA 6 cut(s) 383, 658, 798, 1000, 1119, 1175
AhlI ACTAGT 2 cut(s) 494, 725
AjnI CCWGG 1 cut(s) 255
AluBI AGCT 9 cut(s) 146, 460, 469, 572, 619, 692, 771, 1155, 1249
AluI AGCT 9 cut(s) 146, 460, 469, 572, 619, 692, 771, 1155, 1249
Alw21I GWGCWC 1 cut(s) 621
Alw26I GTCTC 1 cut(s) 324
AlwI GGATC 4 cut(s) 104, 270, 515, 776
AlwNI CAGNNNCTG 1 cut(s) 572
AoxI GGCC 4 cut(s) 138, 262, 322, 817
Asp700I GAANNNNTTC 2 cut(s) 707, 1216
Asp718I GGTACC 2 cut(s) 1049, 1127
AspLEI GCGC 2 cut(s) 1091, 1142
AspS9I GGNCC 1 cut(s) 323
AsuHPI GGTGA 1 cut(s) 1028
AsuII TTCGAA 1 cut(s) 650
BanI GGYRCC 3 cut(s) 1049, 1127, 1139
BanII GRGCYC 1 cut(s) 621
BbsI GAAGAC 1 cut(s) 1156
Bbv12I GWGCWC 1 cut(s) 621
BbvCI CCTCAGC 2 cut(s) 592, 1029
BccI CCATC 8 cut(s) 63, 371, 676, 761, 795, 977, 1081, 1142
BceAI ACGGC 4 cut(s) 153, 321, 401, 1230
BciT130I CCWGG 1 cut(s) 257
BcoDI GTCTC 1 cut(s) 324
BcuI ACTAGT 2 cut(s) 494, 725
BfaI CTAG 3 cut(s) 147, 495, 726
BfoI RGCGCY 1 cut(s) 1143
BlpI GCTNAGC 3 cut(s) 465, 573, 1023
Bme1390I CCNGG 1 cut(s) 257
BmgT120I GGNCC 1 cut(s) 323
BmiI GGNNCC 4 cut(s) 325, 1051, 1129, 1141
BmrFI CCNGG 1 cut(s) 257
BmrI ACTGGG 1 cut(s) 402
BmsI GCATC 1 cut(s) 490
BmuI ACTGGG 1 cut(s) 402
BpiI GAAGAC 1 cut(s) 1156
BpmI CTGGAG 1 cut(s) 919
Bpu10I CCTNAGC 2 cut(s) 592, 1029
Bpu1102I GCTNAGC 3 cut(s) 465, 573, 1023
Bpu14I TTCGAA 1 cut(s) 650
BsaBI GATNNNNATC 1 cut(s) 786
BsaHI GRCGYC 1 cut(s) 1140
BsaI GGTCTC 1 cut(s) 324
BsaJI CCNNGG 5 cut(s) 256, 476, 510, 814, 1042
BsaWI WCCGGW 2 cut(s) 281, 342
BsaXI ACNNNNNCTCC 4 cut(s) 231, 261, 1213, 1243
Bsc4I CCNNNNNNNGG 3 cut(s) 423, 1045, 1092
Bse118I RCCGGY 1 cut(s) 596
Bse1I ACTGG 4 cut(s) 408, 428, 936, 1062
Bse3DI GCAATG 3 cut(s) 86, 918, 970
Bse8I GATNNNNATC 1 cut(s) 786
BseBI CCWGG 1 cut(s) 257
BseDI CCNNGG 5 cut(s) 256, 476, 510, 814, 1042
BseGI GGATG 3 cut(s) 74, 363, 481
BseJI GATNNNNATC 1 cut(s) 786
BseLI CCNNNNNNNGG 3 cut(s) 423, 1045, 1092
BseMI GCAATG 3 cut(s) 86, 918, 970
BseMII CTCAG 7 cut(s) 456, 564, 606, 693, 1037, 1043, 1179
BseNI ACTGG 4 cut(s) 408, 428, 936, 1062
BseRI GAGGAG 2 cut(s) 922, 1196
BseYI CCCAGC 1 cut(s) 879
Bsh1236I CGCG 1 cut(s) 1089
BshFI GGCC 4 cut(s) 140, 264, 324, 819
BshNI GGYRCC 3 cut(s) 1049, 1127, 1139
BsiHKAI GWGCWC 1 cut(s) 621
BsiSI CCGG 3 cut(s) 282, 343, 597
BslI CCNNNNNNNGG 3 cut(s) 423, 1045, 1092
BsmAI GTCTC 1 cut(s) 324
BsmI GAATGC 1 cut(s) 1170
BsnI GGCC 4 cut(s) 140, 264, 324, 819
Bso31I GGTCTC 1 cut(s) 324
Bsp119I TTCGAA 1 cut(s) 650
Bsp1286I GDGCHC 1 cut(s) 621
Bsp143I GATC 8 cut(s) 96, 275, 292, 400, 520, 530, 781, 1207
Bsp1720I GCTNAGC 3 cut(s) 465, 573, 1023
Bsp19I CCATGG 1 cut(s) 1042
BspANI GGCC 4 cut(s) 140, 264, 324, 819
BspCNI CTCAG 7 cut(s) 457, 565, 605, 692, 1036, 1042, 1180
BspFNI CGCG 1 cut(s) 1089
BspLI GGNNCC 4 cut(s) 325, 1051, 1129, 1141
BspPI GGATC 4 cut(s) 104, 270, 515, 776
BspT104I TTCGAA 1 cut(s) 650
BspT107I GGYRCC 3 cut(s) 1049, 1127, 1139
BspTNI GGTCTC 1 cut(s) 324
BsrDI GCAATG 3 cut(s) 86, 918, 970
BsrFI RCCGGY 1 cut(s) 596
BsrI ACTGG 4 cut(s) 408, 428, 936, 1062
BssAI RCCGGY 1 cut(s) 596
BssECI CCNNGG 5 cut(s) 256, 476, 510, 814, 1042
BssMI GATC 8 cut(s) 96, 275, 292, 400, 520, 530, 781, 1207
BssNI GRCGYC 1 cut(s) 1140
BssT1I CCWWGG 2 cut(s) 476, 1042
Bst2UI CCWGG 1 cut(s) 257
Bst4CI ACNGT 3 cut(s) 127, 389, 1196
Bst6I CTCTTC 1 cut(s) 1120
BstACI GRCGYC 1 cut(s) 1140
BstBI TTCGAA 1 cut(s) 650
BstC8I GCNNGC 5 cut(s) 462, 598, 1087, 1157, 1247
BstDEI CTNAG 7 cut(s) 465, 573, 592, 679, 1023, 1029, 1188
BstDSI CCRYGG 1 cut(s) 1042
BstF5I GGATG 3 cut(s) 74, 363, 481
BstFNI CGCG 1 cut(s) 1089
BstH2I RGCGCY 1 cut(s) 1143
BstHHI GCGC 2 cut(s) 1091, 1142
BstKTI GATC 8 cut(s) 99, 278, 295, 403, 523, 533, 784, 1210
BstMAI GTCTC 1 cut(s) 324
BstMBI GATC 8 cut(s) 96, 275, 292, 400, 520, 530, 781, 1207
BstMWI GCNNNNNNNGC 9 cut(s) 108, 359, 466, 512, 625, 743, 1102, 1105, 1108
BstNI CCWGG 1 cut(s) 257
BstSCI CCNGG 1 cut(s) 255
BstUI CGCG 1 cut(s) 1089
BstV2I GAAGAC 1 cut(s) 1156
BstXI CCANNNNNNTGG 1 cut(s) 31
BsuRI GGCC 4 cut(s) 140, 264, 324, 819
BtgI CCRYGG 1 cut(s) 1042
BtsCI GGATG 3 cut(s) 74, 363, 481
BtsI GCAGTG 1 cut(s) 357
BtsIMutI CAGTG 1 cut(s) 357
Cac8I GCNNGC 5 cut(s) 462, 598, 1087, 1157, 1247
CaiI CAGNNNCTG 1 cut(s) 572
CfoI GCGC 2 cut(s) 1091, 1142
Cfr10I RCCGGY 1 cut(s) 596
Cfr13I GGNCC 1 cut(s) 323
CseI GACGC 1 cut(s) 294
Csp6I GTAC 2 cut(s) 1050, 1128
CviAII CATG 3 cut(s) 503, 957, 1043
CviQI GTAC 2 cut(s) 1050, 1128
DdeI CTNAG 7 cut(s) 465, 573, 592, 679, 1023, 1029, 1188
DinI GGCGCC 1 cut(s) 1141
DpnI GATC 8 cut(s) 98, 277, 294, 402, 522, 532, 783, 1209
DpnII GATC 8 cut(s) 96, 275, 292, 400, 520, 530, 781, 1207
DrdI GACNNNNNNGTC 1 cut(s) 338
DseDI GACNNNNNNGTC 1 cut(s) 338
EaeI YGGCCR 2 cut(s) 138, 262
Eam1104I CTCTTC 1 cut(s) 1120
EarI CTCTTC 1 cut(s) 1120
EciI GGCGGA 3 cut(s) 340, 654, 1072
Ecl136II GAGCTC 1 cut(s) 619
Eco130I CCWWGG 2 cut(s) 476, 1042
Eco24I GRGCYC 1 cut(s) 621
Eco31I GGTCTC 1 cut(s) 324
Eco53kI GAGCTC 1 cut(s) 619
Eco57I CTGAAG 1 cut(s) 1040
EcoICRI GAGCTC 1 cut(s) 619
EcoO109I RGGNCCY 1 cut(s) 323
EcoRII CCWGG 1 cut(s) 255
EcoT14I CCWWGG 2 cut(s) 476, 1042
EcoT38I GRGCYC 1 cut(s) 621
EgeI GGCGCC 1 cut(s) 1141
EheI GGCGCC 1 cut(s) 1141
ErhI CCWWGG 2 cut(s) 476, 1042
FaeI CATG 3 cut(s) 506, 960, 1046
FalI AAGNNNNNCTT 2 cut(s) 375, 407
FatI CATG 3 cut(s) 502, 956, 1042
FauI CCCGC 3 cut(s) 1094, 1139, 1250
FauNDI CATATG 2 cut(s) 26, 1018
FblI GTMKAC 1 cut(s) 420
FokI GGATG 3 cut(s) 81, 350, 468
FriOI GRGCYC 1 cut(s) 621
FspBI CTAG 3 cut(s) 147, 495, 726
GlaI GCGC 2 cut(s) 1090, 1141
GsaI CCCAGC 1 cut(s) 883
GsuI CTGGAG 1 cut(s) 919
HaeII RGCGCY 1 cut(s) 1143
HaeIII GGCC 4 cut(s) 140, 264, 324, 819
HapII CCGG 3 cut(s) 282, 343, 597
HgaI GACGC 1 cut(s) 294
HhaI GCGC 2 cut(s) 1091, 1142
Hin1I GRCGYC 1 cut(s) 1140
Hin1II CATG 3 cut(s) 506, 960, 1046
Hin6I GCGC 2 cut(s) 1089, 1140
HinP1I GCGC 2 cut(s) 1089, 1140
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HinfI GANTC 6 cut(s) 62, 538, 587, 647, 677, 929
HpaII CCGG 3 cut(s) 282, 343, 597
HphI GGTGA 1 cut(s) 1028
Hpy166II GTNNAC 2 cut(s) 310, 421
Hpy188I TCNGA 8 cut(s) 7, 122, 586, 640, 682, 945, 1147, 1207
Hpy188III TCNNGA 4 cut(s) 66, 383, 433, 674
Hpy8I GTNNAC 2 cut(s) 310, 421
Hpy99I CGWCG 2 cut(s) 422, 761
HpyAV CCTTC 4 cut(s) 220, 718, 844, 1064
HpyCH4III ACNGT 3 cut(s) 127, 389, 1196
HpyCH4V TGCA 8 cut(s) 79, 84, 179, 191, 250, 566, 776, 1170
HpyF10VI GCNNNNNNNGC 9 cut(s) 108, 359, 466, 512, 625, 743, 1102, 1105, 1108
HpyF3I CTNAG 7 cut(s) 465, 573, 592, 679, 1023, 1029, 1188
Hsp92I GRCGYC 1 cut(s) 1140
Hsp92II CATG 3 cut(s) 506, 960, 1046
HspAI GCGC 2 cut(s) 1089, 1140
KasI GGCGCC 1 cut(s) 1139
KpnI GGTACC 2 cut(s) 1053, 1131
KroI GCCGGC 1 cut(s) 596
KroNI GCCGGC 1 cut(s) 598
Kzo9I GATC 8 cut(s) 96, 275, 292, 400, 520, 530, 781, 1207
LmnI GCTCC 2 cut(s) 624, 960
LweI GCATC 1 cut(s) 490
MaeI CTAG 3 cut(s) 147, 495, 726
MaeIII GTNAC 3 cut(s) 127, 296, 497
MalI GATC 8 cut(s) 98, 277, 294, 402, 522, 532, 783, 1209
MboI GATC 8 cut(s) 96, 275, 292, 400, 520, 530, 781, 1207
MboII GAAGA 5 cut(s) 438, 703, 1107, 1114, 1156
MhlI GDGCHC 1 cut(s) 621
MluCI AATT 7 cut(s) 17, 173, 210, 368, 561, 918, 1234
Mly113I GGCGCC 1 cut(s) 1140
MlyI GAGTC 3 cut(s) 596, 671, 923
MroNI GCCGGC 1 cut(s) 596
MroXI GAANNNNTTC 2 cut(s) 707, 1216
MseI TTAA 1 cut(s) 609
MslI CAYNNNNRTG 3 cut(s) 29, 1017, 1041
MspA1I CMGCKG 2 cut(s) 572, 740
MspI CCGG 3 cut(s) 282, 343, 597
MspR9I CCNGG 1 cut(s) 257
Mva1269I GAATGC 1 cut(s) 1170
MvaI CCWGG 1 cut(s) 257
MvnI CGCG 1 cut(s) 1089
MwoI GCNNNNNNNGC 9 cut(s) 108, 359, 466, 512, 625, 743, 1102, 1105, 1108
NaeI GCCGGC 1 cut(s) 598
NarI GGCGCC 1 cut(s) 1140
NcoI CCATGG 1 cut(s) 1042
NdeI CATATG 2 cut(s) 26, 1018
NdeII GATC 8 cut(s) 96, 275, 292, 400, 520, 530, 781, 1207
NgoMIV GCCGGC 1 cut(s) 596
NlaIII CATG 3 cut(s) 506, 960, 1046
NlaIV GGNNCC 4 cut(s) 325, 1051, 1129, 1141
NmeAIII GCCGAG 2 cut(s) 535, 795
NmuCI GTSAC 2 cut(s) 127, 296
NspV TTCGAA 1 cut(s) 650
PcsI WCGNNNNNNNCGW 1 cut(s) 292
PctI GAATGC 1 cut(s) 1170
PdiI GCCGGC 1 cut(s) 598
PdmI GAANNNNTTC 2 cut(s) 707, 1216
PfeI GAWTC 3 cut(s) 62, 538, 647
PleI GAGTC 3 cut(s) 595, 671, 923
PluTI GGCGCC 1 cut(s) 1143
PpsI GAGTC 3 cut(s) 595, 671, 923
Psp124BI GAGCTC 1 cut(s) 621
Psp6I CCWGG 1 cut(s) 255
PspFI CCCAGC 1 cut(s) 879
PspGI CCWGG 1 cut(s) 255
PspN4I GGNNCC 4 cut(s) 325, 1051, 1129, 1141
PspPI GGNCC 1 cut(s) 323
PstNI CAGNNNCTG 1 cut(s) 572
PvuII CAGCTG 1 cut(s) 572
RsaI GTAC 2 cut(s) 1051, 1129
RsaNI GTAC 2 cut(s) 1050, 1128
RseI CAYNNNNRTG 3 cut(s) 29, 1017, 1041
SacI GAGCTC 1 cut(s) 621
SalI GTCGAC 1 cut(s) 419
SaqAI TTAA 1 cut(s) 609
Sau3AI GATC 8 cut(s) 96, 275, 292, 400, 520, 530, 781, 1207
Sau96I GGNCC 1 cut(s) 323
SchI GAGTC 3 cut(s) 596, 671, 923
ScrFI CCNGG 1 cut(s) 257
SduI GDGCHC 1 cut(s) 621
SfaNI GCATC 1 cut(s) 490
SfoI GGCGCC 1 cut(s) 1141
SfuI TTCGAA 1 cut(s) 650
SmiMI CAYNNNNRTG 3 cut(s) 29, 1017, 1041
SpeI ACTAGT 2 cut(s) 494, 725
Sse9I AATT 7 cut(s) 17, 173, 210, 368, 561, 918, 1234
SspDI GGCGCC 1 cut(s) 1139
SspI AATATT 1 cut(s) 856
SspMI CTAG 3 cut(s) 147, 495, 726
SstI GAGCTC 1 cut(s) 621
StyD4I CCNGG 1 cut(s) 255
StyI CCWWGG 2 cut(s) 476, 1042
TaaI ACNGT 3 cut(s) 127, 389, 1196
TaqI TCGA 7 cut(s) 274, 403, 420, 536, 650, 759, 1210
TasI AATT 7 cut(s) 17, 173, 210, 368, 561, 918, 1234
TauI GCSGC 6 cut(s) 105, 264, 580, 740, 908, 911
TfiI GAWTC 3 cut(s) 62, 538, 647
Tru1I TTAA 1 cut(s) 609
Tru9I TTAA 1 cut(s) 609
TscAI CASTG 1 cut(s) 364
TseFI GTSAC 2 cut(s) 127, 296
Tsp45I GTSAC 2 cut(s) 127, 296
TspDTI ATGAA 5 cut(s) 239, 567, 716, 848, 981
TspGWI ACGGA 1 cut(s) 513
TspRI CASTG 1 cut(s) 364
XmiI GTMKAC 1 cut(s) 420
XmnI GAANNNNTTC 2 cut(s) 707, 1216
XspI CTAG 3 cut(s) 147, 495, 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.