Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004731

Physical Location & Seq

Genomic Coordinates Reverse (-)

13263520 .. 13266565

Gene Structure 3046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G31130.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGATTTTAAAGGTATAAAATGGGTTGGGAATGTTTATCAGAAGTTTGAAGCAATGTGCTTAGAGGTTGAAGAAATTATCGTGCAGGACACAGCAAAATATGTTGAGAATCAAGTTCAGACGGTTGGTAACAGTGTCAAGAAATTCTGTTCAGATGTGGTTCACGACTTGCTGCCTGATGAATCTGTAGATTCGGGAAAACCTTTGCCCGTTTCTATGTTACATGAATACGCCCCTGTTTATTCTTTCAAAAAAAAAAAAGATAGTATGAACCGGAAAACTAAAGATGTGACACAAGAGCAAGAGGTAACTGAGGGGAAGAAGGATGGATTTGCAAAGAAATTACGTGGTCTTGATGCAGATGATTATGATATCTGTACTTCTCCAAGGCAGTATAGTTATGGAGGTCCATACAGAAGAACAAGAATCGGCCGCAAACAGATATTTAAAAAAGAGGAGCTTTCCCAAGTCATCAGGCCTTATATCCAGAAAGACTTGACTAGTTTATCAATGGTTCATAGTGCTCGTGTCAAAGATGATCTTGGAACTGTAAACTCTAGTAGTTTATCAATGGTTCATAGTGCTCGTGTCAATGATGATGTTGGAACTGTAAACTCAAGTAGTTTATCAATGGTTCATCATGCTAGTATGAAAGATGATGTCGGAACTGTAAAGTCAAGTGATTCTCCTCCAGGTGAAGTAGAAAAACTCATCTCCAAAAAGAAATGTCAGAAAGACGATAAAGCCAAAAATCAACAGAGTCTGACAGTGGTTAATTCTGTTAAAAGTAATGATTCAGAGGTTATAGTCGATAATGAACACGGTCTTTCGGCAGATAAGTCTGTTAGAAGTCAAGATTTGGAGATTCAACCATCTCTGGCCACTAGCTTACCTGCAGAATCTGATGATTGCAGAAAGGAAACCAATGTGGAAACAAGTTCGAGTTCTGTCTCAGAGCCGAAGTCAGAGATTCTCCAACATCTTAGTGGGAGATCAGTTGAAGAAAGCTGTATACTTGTGGATAGAGACGAATTCCATAGTGTGTTTCCTGACAAGATGGAGAATGACAAACACAAACCTTACAAGAAGATCAGAGACGCTATATCTTCAAGAATGAAGCAAAACAGAGAAAAAGAATACAAGCGACTTGCCCGGCAATGGTACGCAGAAGATGTTGAAAATGGGAGAGAATGTGGCGATAATCCGAAACCGATAGAGGAAAACCAATCATCAGAAGAATCTGAATGGGAGCTTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

419

Amino Acids

47.37

Weight (kDa)

5.72

Isoelectric Point (pI)

42.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130
fragaria_vesca	FvH4_6g27121 FvH4_6g27121
malus_domestica	MD09G1239700.v1.1 MD17G1232800.v1.1
prunus_persica	Prupe.3G122900_v2.0.a1
pyrus_communis	pycom09g15830 pycom17g23540 pycom17g23560
rosa_chinensis	RchiOBHm_Chr2g0128471 RchiOBHm_Chr2g0128481 RchiOBHm_Chr2g0129081
rosa_laevigata	RLG00000019053
rosa_multiflora	Rmu_ssc0000449.1_g000008
rosa_roxburghii	Rroxscaffold_2G00114890
rosa_rugosa	Rorug02G0284300.1 Rorug02G0284400 Rorug02G0284500
rosa_samantha	Rh2AG336700 Rh2BG344700 Rh2CG324000 Rh2DG361600 Rh3BG289900 Rh5AG278500
rosa_wichuraiana	Rw2G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	901
AccI	GTMKAC	1 cut(s)	1012
AciI	CCGC	1 cut(s)	433
AcoI	YGGCCR	2 cut(s)	430, 879
AcsI	RAATTY	2 cut(s)	143, 1031
AfaI	GTAC	2 cut(s)	379, 1163
AfiI	CCNNNNNNNGG	1 cut(s)	1158
AgsI	TTSAA	7 cut(s)	50, 71, 250, 869, 1001, 1110, 1178
AhlI	ACTAGT	1 cut(s)	500
AjnI	CCWGG	1 cut(s)	691
AluBI	AGCT	4 cut(s)	460, 888, 1008, 1252
AluI	AGCT	4 cut(s)	460, 888, 1008, 1252
Alw21I	GWGCWC	2 cut(s)	526, 586
Alw26I	GTCTC	3 cut(s)	955, 1020, 1089
AlwNI	CAGNNNCTG	2 cut(s)	763, 902
AoxI	GGCC	3 cut(s)	430, 476, 879
ApeKI	GCWGC	1 cut(s)	172
ApoI	RAATTY	2 cut(s)	143, 1031
AspS9I	GGNCC	1 cut(s)	407
AsuC2I	CCSGG	1 cut(s)	1153
AsuHPI	GGTGA	1 cut(s)	707
AvaII	GGWCC	1 cut(s)	407
BalI	TGGCCA	1 cut(s)	881
BauI	CACGAG	2 cut(s)	525, 585
Bbv12I	GWGCWC	2 cut(s)	526, 586
BbvI	GCAGC	1 cut(s)	159
BccI	CCATC	3 cut(s)	320, 880, 1051
BciT130I	CCWGG	1 cut(s)	693
BcnI	CCSGG	1 cut(s)	1153
BcoDI	GTCTC	3 cut(s)	955, 1020, 1089
BcuI	ACTAGT	1 cut(s)	500
BfaI	CTAG	4 cut(s)	501, 558, 645, 885
BfmI	CTRYAG	2 cut(s)	186, 894
BfuAI	ACCTGC	1 cut(s)	901
BisI	GCNGC	2 cut(s)	173, 433
BlsI	GCNGC	2 cut(s)	174, 434
Bme1390I	CCNGG	2 cut(s)	693, 1153
Bme18I	GGWCC	1 cut(s)	407
BmgT120I	GGNCC	1 cut(s)	407
BmrFI	CCNGG	2 cut(s)	693, 1153
BmsI	GCATC	1 cut(s)	346
BpmI	CTGGAG	1 cut(s)	675
BpuEI	CTTGAG	1 cut(s)	601
BpuMI	CCSGG	1 cut(s)	1153
BsaAI	YACGTR	1 cut(s)	347
BsaJI	CCNNGG	1 cut(s)	386
BsaWI	WCCGGW	1 cut(s)	273
BsaXI	ACNNNNNCTCC	3 cut(s)	1177, 1207, 1241
Bsc4I	CCNNNNNNNGG	1 cut(s)	1158
Bse3DI	GCAATG	2 cut(s)	60, 1163
BseBI	CCWGG	1 cut(s)	693
BseDI	CCNNGG	1 cut(s)	386
BseGI	GGATG	1 cut(s)	331
BseLI	CCNNNNNNNGG	1 cut(s)	1158
BseMI	GCAATG	2 cut(s)	60, 1163
BseMII	CTCAG	2 cut(s)	303, 966
BseRI	GAGGAG	2 cut(s)	470, 678
BseX3I	CGGCCG	1 cut(s)	430
BseXI	GCAGC	1 cut(s)	159
BsgI	GTGCAG	1 cut(s)	104
Bsh1285I	CGRYCG	1 cut(s)	433
BshFI	GGCC	3 cut(s)	432, 478, 881
BsiEI	CGRYCG	1 cut(s)	433
BsiHKAI	GWGCWC	2 cut(s)	526, 586
BsiSI	CCGG	2 cut(s)	274, 1153
BslI	CCNNNNNNNGG	1 cut(s)	1158
BsmAI	GTCTC	3 cut(s)	955, 1020, 1089
BsmBI	CGTCTC	2 cut(s)	1020, 1089
BsnI	GGCC	3 cut(s)	432, 478, 881
Bsp1286I	GDGCHC	2 cut(s)	526, 586
Bsp143I	GATC	3 cut(s)	538, 992, 1089
BspACI	CCGC	1 cut(s)	433
BspANI	GGCC	3 cut(s)	432, 478, 881
BspCNI	CTCAG	2 cut(s)	304, 965
BspMAI	CTGCAG	1 cut(s)	898
BspMI	ACCTGC	1 cut(s)	901
BsrDI	GCAATG	2 cut(s)	60, 1163
BssECI	CCNNGG	1 cut(s)	386
BssMI	GATC	3 cut(s)	538, 992, 1089
BssNAI	GTATAC	1 cut(s)	1013
BssSI	CACGAG	2 cut(s)	525, 585
BssT1I	CCWWGG	1 cut(s)	386
Bst1107I	GTATAC	1 cut(s)	1013
Bst2BI	CACGAG	2 cut(s)	525, 585
Bst2UI	CCWGG	1 cut(s)	693
Bst4CI	ACNGT	7 cut(s)	124, 134, 550, 610, 670, 769, 824
BstBAI	YACGTR	1 cut(s)	347
BstDEI	CTNAG	4 cut(s)	61, 312, 952, 983
BstF5I	GGATG	1 cut(s)	331
BstKTI	GATC	3 cut(s)	541, 995, 1092
BstMAI	GTCTC	3 cut(s)	955, 1020, 1089
BstMBI	GATC	3 cut(s)	538, 992, 1089
BstMCI	CGRYCG	1 cut(s)	433
BstNI	CCWGG	1 cut(s)	693
BstSCI	CCNGG	2 cut(s)	691, 1151
BstSFI	CTRYAG	2 cut(s)	186, 894
BstV1I	GCAGC	1 cut(s)	159
BstZ17I	GTATAC	1 cut(s)	1013
BstZI	CGGCCG	1 cut(s)	430
BsuRI	GGCC	3 cut(s)	432, 478, 881
BtsCI	GGATG	1 cut(s)	331
BtsIMutI	CAGTG	2 cut(s)	139, 774
BveI	ACCTGC	1 cut(s)	901
CaiI	CAGNNNCTG	2 cut(s)	763, 902
Cfr13I	GGNCC	1 cut(s)	407
CseI	GACGC	1 cut(s)	1106
Csp6I	GTAC	2 cut(s)	378, 1162
CviAII	CATG	2 cut(s)	224, 641
CviJI	RGCY	9 cut(s)	432, 460, 478, 746, 881, 888, 958, 1008, 1252
CviKI_1	RGCY	9 cut(s)	432, 460, 478, 746, 881, 888, 958, 1008, 1252
CviQI	GTAC	2 cut(s)	378, 1162
DdeI	CTNAG	4 cut(s)	61, 312, 952, 983
DpnI	GATC	3 cut(s)	540, 994, 1091
DpnII	GATC	3 cut(s)	538, 992, 1089
DraI	TTTAAA	2 cut(s)	10, 448
EaeI	YGGCCR	2 cut(s)	430, 879
EagI	CGGCCG	1 cut(s)	430
EclXI	CGGCCG	1 cut(s)	430
Eco130I	CCWWGG	1 cut(s)	386
Eco147I	AGGCCT	1 cut(s)	478
Eco32I	GATATC	1 cut(s)	373
Eco47I	GGWCC	1 cut(s)	407
Eco52I	CGGCCG	1 cut(s)	430
EcoRI	GAATTC	1 cut(s)	1031
EcoRII	CCWGG	1 cut(s)	691
EcoRV	GATATC	1 cut(s)	373
EcoT14I	CCWWGG	1 cut(s)	386
ErhI	CCWWGG	1 cut(s)	386
Esp3I	CGTCTC	2 cut(s)	1020, 1089
FaeI	CATG	2 cut(s)	227, 644
FalI	AAGNNNNNCTT	4 cut(s)	444, 476, 525, 557
FatI	CATG	2 cut(s)	223, 640
FblI	GTMKAC	1 cut(s)	1012
Fnu4HI	GCNGC	2 cut(s)	173, 433
FokI	GGATG	1 cut(s)	338
Fsp4HI	GCNGC	2 cut(s)	173, 433
FspBI	CTAG	4 cut(s)	501, 558, 645, 885
GluI	GCNGC	2 cut(s)	173, 433
GsuI	CTGGAG	1 cut(s)	675
HaeIII	GGCC	3 cut(s)	432, 478, 881
HapII	CCGG	2 cut(s)	274, 1153
HgaI	GACGC	1 cut(s)	1106
Hin1II	CATG	2 cut(s)	227, 644
HpaII	CCGG	2 cut(s)	274, 1153
HphI	GGTGA	1 cut(s)	707
Hpy166II	GTNNAC	4 cut(s)	163, 553, 613, 1013
Hpy188III	TCNNGA	8 cut(s)	139, 164, 195, 353, 487, 854, 1049, 1110
Hpy8I	GTNNAC	4 cut(s)	163, 553, 613, 1013
HpyAV	CCTTC	1 cut(s)	316
HpyCH4III	ACNGT	7 cut(s)	124, 134, 550, 610, 670, 769, 824
HpyCH4IV	ACGT	1 cut(s)	346
HpyCH4V	TGCA	5 cut(s)	85, 335, 359, 896, 912
HpyF3I	CTNAG	4 cut(s)	61, 312, 952, 983
HpySE526I	ACGT	1 cut(s)	346
Hsp92II	CATG	2 cut(s)	227, 644
Kzo9I	GATC	3 cut(s)	538, 992, 1089
LmnI	GCTCC	2 cut(s)	457, 1249
Lsp1109I	GCAGC	1 cut(s)	159
LweI	GCATC	1 cut(s)	346
MaeI	CTAG	4 cut(s)	501, 558, 645, 885
MaeII	ACGT	1 cut(s)	346
MaeIII	GTNAC	4 cut(s)	128, 219, 289, 307
MalI	GATC	3 cut(s)	540, 994, 1091
MboI	GATC	3 cut(s)	538, 992, 1089
MboII	GAAGA	8 cut(s)	83, 331, 429, 1013, 1098, 1099, 1181, 1247
MhlI	GDGCHC	2 cut(s)	526, 586
MlsI	TGGCCA	1 cut(s)	881
MluCI	AATT	5 cut(s)	75, 143, 341, 775, 1031
MluNI	TGGCCA	1 cut(s)	881
MlyI	GAGTC	1 cut(s)	769
MmeI	TCCRAC	3 cut(s)	583, 643, 1000
MnlI	CCTC	8 cut(s)	58, 298, 307, 398, 448, 699, 793, 1210
Mox20I	TGGCCA	1 cut(s)	881
MscI	TGGCCA	1 cut(s)	881
MseI	TTAA	4 cut(s)	9, 447, 774, 783
MslI	CAYNNNNRTG	1 cut(s)	984
Msp20I	TGGCCA	1 cut(s)	881
MspI	CCGG	2 cut(s)	274, 1153
MspR9I	CCNGG	2 cut(s)	693, 1153
MvaI	CCWGG	1 cut(s)	693
NciI	CCSGG	1 cut(s)	1153
NdeII	GATC	3 cut(s)	538, 992, 1089
NlaIII	CATG	2 cut(s)	227, 644
NmuCI	GTSAC	1 cut(s)	289
PceI	AGGCCT	1 cut(s)	478
PkrI	GCNGC	2 cut(s)	174, 434
PleI	GAGTC	1 cut(s)	768
PpsI	GAGTC	1 cut(s)	768
Ppu21I	YACGTR	1 cut(s)	347
Psp6I	CCWGG	1 cut(s)	691
PspGI	CCWGG	1 cut(s)	691
PspPI	GGNCC	1 cut(s)	407
PstI	CTGCAG	1 cut(s)	898
PstNI	CAGNNNCTG	2 cut(s)	763, 902
RsaI	GTAC	2 cut(s)	379, 1163
RsaNI	GTAC	2 cut(s)	378, 1162
RseI	CAYNNNNRTG	1 cut(s)	984
SaqAI	TTAA	4 cut(s)	9, 447, 774, 783
SatI	GCNGC	2 cut(s)	173, 433
Sau3AI	GATC	3 cut(s)	538, 992, 1089
Sau96I	GGNCC	1 cut(s)	407
SchI	GAGTC	1 cut(s)	769
ScrFI	CCNGG	2 cut(s)	693, 1153
SduI	GDGCHC	2 cut(s)	526, 586
SfaNI	GCATC	1 cut(s)	346
SfcI	CTRYAG	2 cut(s)	186, 894
SinI	GGWCC	1 cut(s)	407
SmiMI	CAYNNNNRTG	1 cut(s)	984
SmlI	CTYRAG	1 cut(s)	616
SmoI	CTYRAG	1 cut(s)	616
SpeI	ACTAGT	1 cut(s)	500
Sse9I	AATT	5 cut(s)	75, 143, 341, 775, 1031
SseBI	AGGCCT	1 cut(s)	478
SsiI	CCGC	1 cut(s)	433
SspMI	CTAG	4 cut(s)	501, 558, 645, 885
StuI	AGGCCT	1 cut(s)	478
StyD4I	CCNGG	2 cut(s)	691, 1151
StyI	CCWWGG	1 cut(s)	386
TaaI	ACNGT	7 cut(s)	124, 134, 550, 610, 670, 769, 824
TaiI	ACGT	1 cut(s)	349
TaqI	TCGA	2 cut(s)	810, 941
TasI	AATT	5 cut(s)	75, 143, 341, 775, 1031
TatI	WGTACW	1 cut(s)	377
TauI	GCSGC	1 cut(s)	435
Tru1I	TTAA	4 cut(s)	9, 447, 774, 783
Tru9I	TTAA	4 cut(s)	9, 447, 774, 783
TscAI	CASTG	2 cut(s)	139, 774
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	9 cut(s)	195, 240, 284, 506, 566, 626, 665, 831, 1130
TspRI	CASTG	2 cut(s)	139, 774
VpaK11BI	GGWCC	1 cut(s)	407
XapI	RAATTY	2 cut(s)	143, 1031
XcmI	CCANNNNNNNNNTGG	1 cut(s)	983
XmiI	GTMKAC	1 cut(s)	1012
XspI	CTAG	4 cut(s)	501, 558, 645, 885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.