Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004731

Physical Location & Seq

Genomic Coordinates Forward (+)

10972744 .. 10975174

Gene Structure 2431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G122900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGATCACTATGGATGTAAATGGTATAACCTGGGTTGGGGGTGTATATGAGAAATTCGAATCTATGTGCTTGGAGGTGGAAGAAAATATGTACCAGGACACAGTCAAATTTGTTGAGAATCAGGTACAGACTGTTGGTGCAAGTGTTAAAAAGTTCTATGCAGATGTAATGCAAGATTTGCTCCCTGACTCTTTGATGGATCCAGAGAAGATGTCAGCCTGTGGTTTCCCTGTTGAAAATATTTTTGATGTTGATAATTCTAAAAGTTCAAGGATTACCAAGAAAGAAGAACCTATAAAGGCTAATGTTGAACACTTAAATAGGGATTCAGAGGTGATATCTTCTGTTAAGAATAAGGGTGTGGACCATAAACCATCCTTCCGTGAACAACACATGTATGACTATCGCACGCAATCTGCAGAGAGTTGTGCGGAGGAAGCATGCTTGGACTTGTACTCAAGACAAGACCATGATGGGAATATGTTTAACAATACAAACTTGGCTGTCAAAGAGAATCCAACAAAGCACAGATGTCCACAGGCGATTCCTCCTGCTGAAAAGGATTTGGGCAGACAATCATCATCCTGCCATGAAACCCATAAAGGTTCATGCGAGCATATAGATACATTTATAACCCCTTCTATAGATGAAGGTATGGCATGTGACTCCACTAGGGAAGGTCGTGTGATTGCAAATGCAAGCCAATGTACTGCTGATGTTTCAATTGGCTGCCACTCATCTGATATGATTGTTTTGGATAAGTCGGATGCAAAAGAATGGAATGAAATATTAGATTCATCCTTTGGTGGCTTATCATTAGAACCAAATGCTTCAGACATTTGTTTCATCAATGGGGTGGTTTCTCTGGTAGGATCCTCTCCAAGTGGACAAGTACAGTGTGAGAGATATGCTGAAAAGGAGGTCTCAGCATCTCATCCTGGGGGATCACATGACTCCAATTTGGATGCGATTGAGAGTAATATTGTTGTTGTGCAAGAAATGGAAACCATTCAACAATCTGCCAAGGCGAACCTTGAGGAGACTTGTGTGATGGTGACTGGTGAGGATGTTCATTTTGTTCCTCACATGGAAGGCAAGCGTAGGCCTTACAAGAAAAAACTTCAGAAAGCCTTTTCCTCAAGAATGAAGTCTGCAAGGAAGCAAGAATATGAGCAGCTTGCATTATGGTATGGGGATGATGCAAAATCAAATTTGGAAAGTGAAGACGGTGTACTTCATTCTATTACTATGGAGGAGACGAAGAAATCACCATCTCATGATTTTTGTGAATCTGAATGGGAGATTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

437

Amino Acids

48.67

Weight (kDa)

4.84

Isoelectric Point (pI)

57.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130
fragaria_vesca	FvH4_6g27121 FvH4_6g27121
malus_domestica	MD09G1239700.v1.1 MD17G1232800.v1.1
prunus_persica	Prupe.3G122900_v2.0.a1
pyrus_communis	pycom09g15830 pycom17g23540 pycom17g23560
rosa_chinensis	RchiOBHm_Chr2g0128471 RchiOBHm_Chr2g0128481 RchiOBHm_Chr2g0129081
rosa_laevigata	RLG00000019053
rosa_multiflora	Rmu_ssc0000449.1_g000008
rosa_roxburghii	Rroxscaffold_2G00114890
rosa_rugosa	Rorug02G0284300.1 Rorug02G0284400 Rorug02G0284500
rosa_samantha	Rh2AG336700 Rh2BG344700 Rh2CG324000 Rh2DG361600 Rh3BG289900 Rh5AG278500
rosa_wichuraiana	Rw2G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	632
AciI	CCGC	1 cut(s)	431
AclWI	GGATC	5 cut(s)	194, 207, 867, 880, 952
AcsI	RAATTY	3 cut(s)	53, 107, 1210
AcuI	CTGAAG	2 cut(s)	816, 1106
AfaI	GTAC	6 cut(s)	92, 126, 455, 709, 894, 1233
AfiI	CCNNNNNNNGG	1 cut(s)	36
AflIII	ACRYGT	1 cut(s)	393
AgsI	TTSAA	5 cut(s)	236, 270, 311, 723, 1013
AjnI	CCWGG	3 cut(s)	29, 93, 937
AluBI	AGCT	1 cut(s)	1177
AluI	AGCT	1 cut(s)	1177
Alw26I	GTCTC	3 cut(s)	928, 1034, 1250
AlwI	GGATC	5 cut(s)	194, 207, 867, 880, 952
AoxI	GGCC	1 cut(s)	1103
ApeKI	GCWGC	2 cut(s)	729, 1174
ApoI	RAATTY	3 cut(s)	53, 107, 1210
Asp700I	GAANNNNTTC	1 cut(s)	1008
AspS9I	GGNCC	1 cut(s)	364
AsuHPI	GGTGA	4 cut(s)	346, 1066, 1073, 1260
AsuII	TTCGAA	1 cut(s)	57
AvaII	GGWCC	1 cut(s)	364
BamHI	GGATCC	2 cut(s)	199, 872
BarI	GAAGNNNNNNTAC	2 cut(s)	1215, 1247
BbsI	GAAGAC	1 cut(s)	1230
BbvI	GCAGC	2 cut(s)	716, 1186
BccI	CCATC	5 cut(s)	190, 382, 467, 1045, 1279
BciT130I	CCWGG	3 cut(s)	31, 95, 939
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	3 cut(s)	928, 1034, 1250
BfaI	CTAG	1 cut(s)	672
BfmI	CTRYAG	3 cut(s)	417, 642, 1307
BisI	GCNGC	2 cut(s)	730, 1175
BlsI	GCNGC	2 cut(s)	731, 1176
Bme1390I	CCNGG	3 cut(s)	31, 95, 939
Bme18I	GGWCC	1 cut(s)	364
BmgT120I	GGNCC	1 cut(s)	364
BmiI	GGNNCC	2 cut(s)	201, 874
BmrFI	CCNGG	3 cut(s)	31, 95, 939
BmsI	GCATC	4 cut(s)	757, 938, 955, 1189
BpiI	GAAGAC	1 cut(s)	1230
Bpu14I	TTCGAA	1 cut(s)	57
BpuEI	CTTGAG	3 cut(s)	442, 1055, 1123
BsaI	GGTCTC	1 cut(s)	928
BsaJI	CCNNGG	3 cut(s)	30, 938, 1023
BsaXI	ACNNNNNCTCC	1 cut(s)	1292
Bsc4I	CCNNNNNNNGG	1 cut(s)	36
Bse1I	ACTGG	1 cut(s)	1063
BseBI	CCWGG	3 cut(s)	31, 95, 939
BseDI	CCNNGG	3 cut(s)	30, 938, 1023
BseGI	GGATG	9 cut(s)	19, 374, 581, 772, 797, 934, 970, 1072, 1201
BseLI	CCNNNNNNNGG	1 cut(s)	36
BseMII	CTCAG	1 cut(s)	939
BseNI	ACTGG	1 cut(s)	1063
BseRI	GAGGAG	2 cut(s)	1052, 1268
BseXI	GCAGC	2 cut(s)	716, 1186
BshFI	GGCC	1 cut(s)	1105
BslI	CCNNNNNNNGG	1 cut(s)	36
BsmAI	GTCTC	3 cut(s)	928, 1034, 1250
BsmBI	CGTCTC	1 cut(s)	1250
BsnI	GGCC	1 cut(s)	1105
Bso31I	GGTCTC	1 cut(s)	928
Bsp119I	TTCGAA	1 cut(s)	57
Bsp143I	GATC	4 cut(s)	3, 199, 872, 944
BspACI	CCGC	1 cut(s)	431
BspANI	GGCC	1 cut(s)	1105
BspCNI	CTCAG	1 cut(s)	938
BspHI	TCATGA	1 cut(s)	1276
BspLI	GGNNCC	2 cut(s)	201, 874
BspMAI	CTGCAG	1 cut(s)	421
BspPI	GGATC	5 cut(s)	194, 207, 867, 880, 952
BspT104I	TTCGAA	1 cut(s)	57
BspTNI	GGTCTC	1 cut(s)	928
BsrI	ACTGG	1 cut(s)	1063
BssECI	CCNNGG	3 cut(s)	30, 938, 1023
BssMI	GATC	4 cut(s)	3, 199, 872, 944
BssT1I	CCWWGG	1 cut(s)	1023
Bst2UI	CCWGG	3 cut(s)	31, 95, 939
Bst4CI	ACNGT	4 cut(s)	103, 133, 897, 1229
BstAPI	GCANNNNNTGC	1 cut(s)	178
BstBI	TTCGAA	1 cut(s)	57
BstC8I	GCNNGC	6 cut(s)	410, 442, 614, 700, 1097, 1179
BstDEI	CTNAG	1 cut(s)	925
BstF5I	GGATG	9 cut(s)	19, 374, 581, 772, 797, 934, 970, 1072, 1201
BstKTI	GATC	4 cut(s)	6, 202, 875, 947
BstMAI	GTCTC	3 cut(s)	928, 1034, 1250
BstMBI	GATC	4 cut(s)	3, 199, 872, 944
BstMWI	GCNNNNNNNGC	2 cut(s)	178, 437
BstNI	CCWGG	3 cut(s)	31, 95, 939
BstNSI	RCATGY	3 cut(s)	397, 444, 663
BstSCI	CCNGG	3 cut(s)	29, 93, 937
BstSFI	CTRYAG	3 cut(s)	417, 642, 1307
BstV1I	GCAGC	2 cut(s)	716, 1186
BstV2I	GAAGAC	1 cut(s)	1230
BstX2I	RGATCY	2 cut(s)	199, 872
BstYI	RGATCY	2 cut(s)	199, 872
BsuRI	GGCC	1 cut(s)	1105
BtsCI	GGATG	9 cut(s)	19, 374, 581, 772, 797, 934, 970, 1072, 1201
BtsIMutI	CAGTG	1 cut(s)	902
Cac8I	GCNNGC	6 cut(s)	410, 442, 614, 700, 1097, 1179
CciI	TCATGA	1 cut(s)	1276
Cfr13I	GGNCC	1 cut(s)	364
Csp6I	GTAC	6 cut(s)	91, 125, 454, 708, 893, 1232
CviAII	CATG	9 cut(s)	394, 441, 470, 590, 609, 660, 950, 1087, 1277
CviJI	RGCY	9 cut(s)	218, 302, 503, 702, 729, 810, 1105, 1130, 1177
CviKI_1	RGCY	9 cut(s)	218, 302, 503, 702, 729, 810, 1105, 1130, 1177
CviQI	GTAC	6 cut(s)	91, 125, 454, 708, 893, 1232
DdeI	CTNAG	1 cut(s)	925
DpnI	GATC	4 cut(s)	5, 201, 874, 946
DpnII	GATC	4 cut(s)	3, 199, 872, 944
Eco130I	CCWWGG	1 cut(s)	1023
Eco147I	AGGCCT	1 cut(s)	1105
Eco31I	GGTCTC	1 cut(s)	928
Eco32I	GATATC	1 cut(s)	339
Eco47I	GGWCC	1 cut(s)	364
Eco57I	CTGAAG	2 cut(s)	816, 1106
EcoRII	CCWGG	3 cut(s)	29, 93, 937
EcoRV	GATATC	1 cut(s)	339
EcoT14I	CCWWGG	1 cut(s)	1023
ErhI	CCWWGG	1 cut(s)	1023
Esp3I	CGTCTC	1 cut(s)	1250
FaeI	CATG	9 cut(s)	397, 444, 473, 593, 612, 663, 953, 1090, 1280
FatI	CATG	9 cut(s)	393, 440, 469, 589, 608, 659, 949, 1086, 1276
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	2 cut(s)	730, 1175
FokI	GGATG	9 cut(s)	26, 361, 568, 779, 784, 921, 977, 1079, 1208
Fsp4HI	GCNGC	2 cut(s)	730, 1175
FspBI	CTAG	1 cut(s)	672
GluI	GCNGC	2 cut(s)	730, 1175
HaeIII	GGCC	1 cut(s)	1105
Hin1II	CATG	9 cut(s)	397, 444, 473, 593, 612, 663, 953, 1090, 1280
HphI	GGTGA	4 cut(s)	346, 1066, 1073, 1260
Hpy166II	GTNNAC	5 cut(s)	364, 386, 536, 887, 1232
Hpy188I	TCNGA	6 cut(s)	331, 742, 766, 835, 1125, 1294
Hpy188III	TCNNGA	4 cut(s)	203, 459, 1140, 1277
Hpy8I	GTNNAC	5 cut(s)	364, 386, 536, 887, 1232
HpyAV	CCTTC	5 cut(s)	388, 644, 648, 671, 1085
HpyCH4III	ACNGT	4 cut(s)	103, 133, 897, 1229
HpyF10VI	GCNNNNNNNGC	2 cut(s)	178, 437
HpyF3I	CTNAG	1 cut(s)	925
Hsp92II	CATG	9 cut(s)	397, 444, 473, 593, 612, 663, 953, 1090, 1280
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 199, 872, 944
LmnI	GCTCC	1 cut(s)	186
Lsp1109I	GCAGC	2 cut(s)	716, 1186
LweI	GCATC	4 cut(s)	757, 938, 955, 1189
MaeI	CTAG	1 cut(s)	672
MaeIII	GTNAC	2 cut(s)	662, 1054
MalI	GATC	4 cut(s)	5, 201, 874, 946
MboI	GATC	4 cut(s)	3, 199, 872, 944
MboII	GAAGA	6 cut(s)	92, 220, 299, 333, 1235, 1273
MfeI	CAATTG	1 cut(s)	723
MflI	RGATCY	2 cut(s)	199, 872
MluCI	AATT	6 cut(s)	53, 107, 256, 723, 958, 1210
MlyI	GAGTC	3 cut(s)	182, 659, 947
MmeI	TCCRAC	2 cut(s)	542, 744
MroXI	GAANNNNTTC	1 cut(s)	1008
MseI	TTAA	4 cut(s)	147, 317, 348, 486
MslI	CAYNNNNRTG	1 cut(s)	396
MspR9I	CCNGG	3 cut(s)	31, 95, 939
MunI	CAATTG	1 cut(s)	723
MvaI	CCWGG	3 cut(s)	31, 95, 939
MwoI	GCNNNNNNNGC	2 cut(s)	178, 437
NdeII	GATC	4 cut(s)	3, 199, 872, 944
NlaIII	CATG	9 cut(s)	397, 444, 473, 593, 612, 663, 953, 1090, 1280
NlaIV	GGNNCC	2 cut(s)	201, 874
NmuCI	GTSAC	2 cut(s)	662, 1054
NspI	RCATGY	3 cut(s)	397, 444, 663
NspV	TTCGAA	1 cut(s)	57
PaeI	GCATGC	1 cut(s)	444
PagI	TCATGA	1 cut(s)	1276
PceI	AGGCCT	1 cut(s)	1105
PciI	ACATGT	1 cut(s)	393
PdmI	GAANNNNTTC	1 cut(s)	1008
PfeI	GAWTC	8 cut(s)	59, 118, 326, 514, 544, 794, 1289, 1303
PflFI	GACNNNGTC	1 cut(s)	101
PkrI	GCNGC	2 cut(s)	731, 1176
PleI	GAGTC	3 cut(s)	182, 659, 947
PpsI	GAGTC	3 cut(s)	182, 659, 947
PscI	ACATGT	1 cut(s)	393
PsiI	TTATAA	1 cut(s)	632
Psp6I	CCWGG	3 cut(s)	29, 93, 937
PspGI	CCWGG	3 cut(s)	29, 93, 937
PspN4I	GGNNCC	2 cut(s)	201, 874
PspPI	GGNCC	1 cut(s)	364
PstI	CTGCAG	1 cut(s)	421
PsuI	RGATCY	2 cut(s)	199, 872
PsyI	GACNNNGTC	1 cut(s)	101
RsaI	GTAC	6 cut(s)	92, 126, 455, 709, 894, 1233
RsaNI	GTAC	6 cut(s)	91, 125, 454, 708, 893, 1232
RseI	CAYNNNNRTG	1 cut(s)	396
SaqAI	TTAA	4 cut(s)	147, 317, 348, 486
SatI	GCNGC	2 cut(s)	730, 1175
Sau3AI	GATC	4 cut(s)	3, 199, 872, 944
Sau96I	GGNCC	1 cut(s)	364
SchI	GAGTC	3 cut(s)	182, 659, 947
ScrFI	CCNGG	3 cut(s)	31, 95, 939
SfaNI	GCATC	4 cut(s)	757, 938, 955, 1189
SfcI	CTRYAG	3 cut(s)	417, 642, 1307
SfuI	TTCGAA	1 cut(s)	57
SinI	GGWCC	1 cut(s)	364
SmiMI	CAYNNNNRTG	1 cut(s)	396
SmlI	CTYRAG	3 cut(s)	457, 1034, 1138
SmoI	CTYRAG	3 cut(s)	457, 1034, 1138
SphI	GCATGC	1 cut(s)	444
Sse9I	AATT	6 cut(s)	53, 107, 256, 723, 958, 1210
SseBI	AGGCCT	1 cut(s)	1105
SsiI	CCGC	1 cut(s)	431
SspI	AATATT	3 cut(s)	241, 789, 982
SspMI	CTAG	1 cut(s)	672
StuI	AGGCCT	1 cut(s)	1105
StyD4I	CCNGG	3 cut(s)	29, 93, 937
StyI	CCWWGG	1 cut(s)	1023
TaaI	ACNGT	4 cut(s)	103, 133, 897, 1229
TaqI	TCGA	1 cut(s)	57
TasI	AATT	6 cut(s)	53, 107, 256, 723, 958, 1210
TatI	WGTACW	4 cut(s)	453, 707, 892, 1231
TfiI	GAWTC	8 cut(s)	59, 118, 326, 514, 544, 794, 1289, 1303
Tru1I	TTAA	4 cut(s)	147, 317, 348, 486
Tru9I	TTAA	4 cut(s)	147, 317, 348, 486
TscAI	CASTG	1 cut(s)	902
TseFI	GTSAC	2 cut(s)	662, 1054
TseI	GCWGC	2 cut(s)	729, 1174
Tsp45I	GTSAC	2 cut(s)	662, 1054
TspDTI	ATGAA	9 cut(s)	597, 606, 663, 786, 798, 835, 1061, 1160, 1226
TspGWI	ACGGA	1 cut(s)	371
TspRI	CASTG	1 cut(s)	902
Tth111I	GACNNNGTC	1 cut(s)	101
VpaK11BI	GGWCC	1 cut(s)	364
XapI	RAATTY	3 cut(s)	53, 107, 1210
XceI	RCATGY	3 cut(s)	397, 444, 663
XmnI	GAANNNNTTC	1 cut(s)	1008
XspI	CTAG	1 cut(s)	672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.