Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004731

Physical Location & Seq

Genomic Coordinates Reverse (-)

45614425 .. 45616203

Gene Structure 1779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019053

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGATGTCAAAGGTATAAACTGGGTTGGGTGTGTGTACGAGAAATTTGAATCTATGTGCTTGGAGGTGGAAGAAAATATGTACCAGGACACAGTTAAATTTGTTGAAGATCAGGTACAGACTGTTGGGGAGAGTGTTAAAAAGTTCTATGCAGATATGATGCAAGATTTGCTCTGTGACTCTTCATTGGATGGAGAGAATATATCAGCTTGTGGTTTTCCTATTGAACACTATTCAGATGTTGATAATTCTAAGAAATCAAAGATTAGAAAAACGAAAGAACATGTAAAGATTGGTGTTGAAGAAGTAAAGGGGGATTCAGAGGTGATTTCTGTTGTGGAGAAGGATGTGGAACATACAGGATTGTTCCATAGACAGCGCGTTTATGATTCTTGCACAAGATCCTCAGGCGATTGTGCTAAAGTAGCATGCTCTGACTTGTACTCAAGACAAGACCATGGCATGAGAAGCTATAACAATAAAAATTTGGTTGTCAAACAAACTCCTATCAAGGACAGATTGCCAGGGGCAAATACTGCTGTTGGAAAAGACTTTCACAGAGTGTCACTATCATGCAGTGAATTTTCAAATGAAAACCGTGACGCTTCATGTGAGCAACCAGATGAAGTTATAACTCCTACAGCGGAAGGTATGAGATGTGATTCCATGAGGGAAAGTTGTGTGGTTGCGAATGCTAGCCAATGTACAGATGATGTTTCAATTAACTGCCAATCATCTGATTTGATTGTTTTGGATAAATCGGATGGAAAAAGATGGAATGAACTGTTAGAGTCATCGATTGGTGGGTTATCAGCTGAATCAAATGGCGGATCTAATAACTCCAGTGTGCATGCAATTGATAGCAATATTGGTGTGCATGGAACGGAAATCAGTCAACAATCTGACAAGGCAAAGCTCGAGGAAACTTGTGTGATGGTCAGTGGTGAGGAACTTCATTTTGTTCATCACATGGTAGCCAACTGTAAGCCTTACAAGAAAAAAATTCCAAAAGCCTTCACTTCAAGAACGAGTTCAGCAAGGAAACAAGAATATGAGCAGCTTGCATTATGGCATGGGCATCATACAAAATCATTTTTAGGAGGAGAAGATTCGGAGAAATCCCTGACTCGTGATTTTTGCGAATCTGAATGGGAGATTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

388

Amino Acids

43.19

Weight (kDa)

5.17

Isoelectric Point (pI)

48.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130
fragaria_vesca	FvH4_6g27121 FvH4_6g27121
malus_domestica	MD09G1239700.v1.1 MD17G1232800.v1.1
prunus_persica	Prupe.3G122900_v2.0.a1
pyrus_communis	pycom09g15830 pycom17g23540 pycom17g23560
rosa_chinensis	RchiOBHm_Chr2g0128471 RchiOBHm_Chr2g0128481 RchiOBHm_Chr2g0129081
rosa_laevigata	RLG00000019053
rosa_multiflora	Rmu_ssc0000449.1_g000008
rosa_roxburghii	Rroxscaffold_2G00114890
rosa_rugosa	Rorug02G0284300.1 Rorug02G0284400 Rorug02G0284500
rosa_samantha	Rh2AG336700 Rh2BG344700 Rh2CG324000 Rh2DG361600 Rh3BG289900 Rh5AG278500
rosa_wichuraiana	Rw2G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	632
AccII	CGCG	1 cut(s)	381
AciI	CCGC	2 cut(s)	644, 828
AclWI	GGATC	2 cut(s)	396, 838
AcsI	RAATTY	5 cut(s)	44, 98, 484, 581, 1002
AdeI	CACNNNGTG	1 cut(s)	562
AfaI	GTAC	5 cut(s)	38, 83, 117, 443, 706
AflIII	ACRYGT	1 cut(s)	283
AgsI	TTSAA	7 cut(s)	50, 107, 227, 302, 588, 720, 1023
AjnI	CCWGG	2 cut(s)	84, 523
AluBI	AGCT	5 cut(s)	209, 471, 815, 916, 1060
AluI	AGCT	5 cut(s)	209, 471, 815, 916, 1060
AlwI	GGATC	2 cut(s)	396, 838
Ama87I	CYCGRG	1 cut(s)	917
ApeKI	GCWGC	1 cut(s)	1057
ApoI	RAATTY	5 cut(s)	44, 98, 484, 581, 1002
Asp700I	GAANNNNTTC	1 cut(s)	1030
AspLEI	GCGC	1 cut(s)	381
AsuHPI	GGTGA	2 cut(s)	337, 956
AsuNHI	GCTAGC	1 cut(s)	695
AvaI	CYCGRG	1 cut(s)	917
AxyI	CCTNAGG	1 cut(s)	406
BarI	GAAGNNNNNNTAC	2 cut(s)	99, 131
BauI	CACGAG	1 cut(s)	1128
BbvI	GCAGC	1 cut(s)	1069
BccI	CCATC	4 cut(s)	185, 758, 768, 928
BciT130I	CCWGG	2 cut(s)	86, 525
BfaI	CTAG	2 cut(s)	696, 1162
BfmI	CTRYAG	1 cut(s)	639
BisI	GCNGC	1 cut(s)	1058
BlsI	GCNGC	1 cut(s)	1059
Bme1390I	CCNGG	2 cut(s)	86, 525
BmeT110I	CYCGRG	1 cut(s)	917
BmrFI	CCNGG	2 cut(s)	86, 525
BmrI	ACTGGG	1 cut(s)	31
BmsI	GCATC	2 cut(s)	150, 1087
BmtI	GCTAGC	1 cut(s)	699
BmuI	ACTGGG	1 cut(s)	31
BpmI	CTGGAG	1 cut(s)	826
BpuEI	CTTGAG	1 cut(s)	430
Bsa29I	ATCGAT	1 cut(s)	797
BsaJI	CCNNGG	2 cut(s)	457, 524
Bse1I	ACTGG	2 cut(s)	26, 843
Bse21I	CCTNAGG	1 cut(s)	406
BseBI	CCWGG	2 cut(s)	86, 525
BseCI	ATCGAT	1 cut(s)	797
BseDI	CCNNGG	2 cut(s)	457, 524
BseGI	GGATG	4 cut(s)	10, 196, 352, 769
BseMII	CTCAG	1 cut(s)	420
BseNI	ACTGG	2 cut(s)	26, 843
BseRI	GAGGAG	1 cut(s)	1116
BseXI	GCAGC	1 cut(s)	1069
Bsh1236I	CGCG	1 cut(s)	381
BshVI	ATCGAT	1 cut(s)	797
BsiHKCI	CYCGRG	1 cut(s)	917
BsmI	GAATGC	1 cut(s)	697
BsoBI	CYCGRG	1 cut(s)	917
Bsp1407I	TGTACA	1 cut(s)	704
Bsp143I	GATC	3 cut(s)	109, 401, 830
Bsp19I	CCATGG	1 cut(s)	457
BspACI	CCGC	2 cut(s)	644, 828
BspCNI	CTCAG	1 cut(s)	419
BspDI	ATCGAT	1 cut(s)	797
BspFNI	CGCG	1 cut(s)	381
BspOI	GCTAGC	1 cut(s)	699
BspPI	GGATC	2 cut(s)	396, 838
BsrGI	TGTACA	1 cut(s)	704
BsrI	ACTGG	2 cut(s)	26, 843
BssECI	CCNNGG	2 cut(s)	457, 524
BssMI	GATC	3 cut(s)	109, 401, 830
BssSI	CACGAG	1 cut(s)	1128
BssT1I	CCWWGG	1 cut(s)	457
Bst2BI	CACGAG	1 cut(s)	1128
Bst2UI	CCWGG	2 cut(s)	86, 525
Bst4CI	ACNGT	5 cut(s)	94, 124, 599, 786, 983
Bst6I	CTCTTC	1 cut(s)	187
BstAPI	GCANNNNNTGC	2 cut(s)	169, 536
BstAUI	TGTACA	1 cut(s)	704
BstC8I	GCNNGC	4 cut(s)	430, 697, 852, 1062
BstDEI	CTNAG	2 cut(s)	252, 406
BstDSI	CCRYGG	1 cut(s)	457
BstF5I	GGATG	4 cut(s)	10, 196, 352, 769
BstFNI	CGCG	1 cut(s)	381
BstHHI	GCGC	1 cut(s)	381
BstKTI	GATC	3 cut(s)	112, 404, 833
BstMBI	GATC	3 cut(s)	109, 401, 830
BstMWI	GCNNNNNNNGC	4 cut(s)	169, 425, 468, 536
BstNI	CCWGG	2 cut(s)	86, 525
BstNSI	RCATGY	3 cut(s)	287, 432, 854
BstSCI	CCNGG	2 cut(s)	84, 523
BstSFI	CTRYAG	1 cut(s)	639
BstUI	CGCG	1 cut(s)	381
BstV1I	GCAGC	1 cut(s)	1069
BstX2I	RGATCY	2 cut(s)	401, 830
BstYI	RGATCY	2 cut(s)	401, 830
Bsu15I	ATCGAT	1 cut(s)	797
Bsu36I	CCTNAGG	1 cut(s)	406
BsuTUI	ATCGAT	1 cut(s)	797
BtgI	CCRYGG	1 cut(s)	457
BtsCI	GGATG	4 cut(s)	10, 196, 352, 769
BtsI	GCAGTG	1 cut(s)	583
BtsIMutI	CAGTG	3 cut(s)	583, 850, 946
Cac8I	GCNNGC	4 cut(s)	430, 697, 852, 1062
CfoI	GCGC	1 cut(s)	381
ClaI	ATCGAT	1 cut(s)	797
CseI	GACGC	1 cut(s)	611
Csp6I	GTAC	5 cut(s)	37, 82, 116, 442, 705
CviJI	RGCY	9 cut(s)	209, 471, 699, 815, 916, 977, 988, 1013, 1060
CviKI_1	RGCY	9 cut(s)	209, 471, 699, 815, 916, 977, 988, 1013, 1060
CviQI	GTAC	5 cut(s)	37, 82, 116, 442, 705
DdeI	CTNAG	2 cut(s)	252, 406
DpnI	GATC	3 cut(s)	111, 403, 832
DpnII	GATC	3 cut(s)	109, 401, 830
DraIII	CACNNNGTG	1 cut(s)	562
Eam1104I	CTCTTC	1 cut(s)	187
EarI	CTCTTC	1 cut(s)	187
EciI	GGCGGA	1 cut(s)	843
Eco130I	CCWWGG	1 cut(s)	457
Eco81I	CCTNAGG	1 cut(s)	406
Eco88I	CYCGRG	1 cut(s)	917
EcoRII	CCWGG	2 cut(s)	84, 523
EcoT14I	CCWWGG	1 cut(s)	457
ErhI	CCWWGG	1 cut(s)	457
Fnu4HI	GCNGC	1 cut(s)	1058
FokI	GGATG	4 cut(s)	17, 203, 359, 776
Fsp4HI	GCNGC	1 cut(s)	1058
FspBI	CTAG	2 cut(s)	696, 1162
GlaI	GCGC	1 cut(s)	380
GluI	GCNGC	1 cut(s)	1058
GsuI	CTGGAG	1 cut(s)	826
HgaI	GACGC	1 cut(s)	611
HhaI	GCGC	1 cut(s)	381
Hin6I	GCGC	1 cut(s)	379
HinP1I	GCGC	1 cut(s)	379
HincII	GTYRAC	1 cut(s)	896
HindII	GTYRAC	1 cut(s)	896
HphI	GGTGA	2 cut(s)	337, 956
Hpy166II	GTNNAC	2 cut(s)	37, 896
Hpy188I	TCNGA	8 cut(s)	238, 322, 436, 739, 763, 904, 1114, 1147
Hpy188III	TCNNGA	3 cut(s)	447, 1023, 1130
Hpy8I	GTNNAC	2 cut(s)	37, 896
HpyAV	CCTTC	3 cut(s)	337, 641, 1024
HpyCH4III	ACNGT	5 cut(s)	94, 124, 599, 786, 983
HpyCH4V	TGCA	8 cut(s)	152, 163, 396, 576, 850, 854, 877, 1064
HpyF10VI	GCNNNNNNNGC	4 cut(s)	169, 425, 468, 536
HpyF3I	CTNAG	2 cut(s)	252, 406
HspAI	GCGC	1 cut(s)	379
Kzo9I	GATC	3 cut(s)	109, 401, 830
Lsp1109I	GCAGC	1 cut(s)	1069
LweI	GCATC	2 cut(s)	150, 1087
MaeI	CTAG	2 cut(s)	696, 1162
MaeIII	GTNAC	3 cut(s)	176, 564, 599
MalI	GATC	3 cut(s)	111, 403, 832
MboI	GATC	3 cut(s)	109, 401, 830
MboII	GAAGA	5 cut(s)	83, 119, 174, 314, 1118
MfeI	CAATTG	1 cut(s)	855
MflI	RGATCY	2 cut(s)	401, 830
MluCI	AATT	8 cut(s)	44, 98, 247, 484, 581, 720, 855, 1002
MlyI	GAGTC	3 cut(s)	173, 800, 1120
MmeI	TCCRAC	1 cut(s)	523
MnlI	CCTC	7 cut(s)	58, 316, 415, 663, 913, 940, 1094
MroXI	GAANNNNTTC	1 cut(s)	1030
MseI	TTAA	3 cut(s)	96, 138, 723
MslI	CAYNNNNRTG	1 cut(s)	571
MspA1I	CMGCKG	2 cut(s)	644, 815
MspR9I	CCNGG	2 cut(s)	86, 525
MunI	CAATTG	1 cut(s)	855
Mva1269I	GAATGC	1 cut(s)	697
MvaI	CCWGG	2 cut(s)	86, 525
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	4 cut(s)	169, 425, 468, 536
NcoI	CCATGG	1 cut(s)	457
NdeII	GATC	3 cut(s)	109, 401, 830
NheI	GCTAGC	1 cut(s)	695
NmuCI	GTSAC	3 cut(s)	176, 564, 599
NspI	RCATGY	3 cut(s)	287, 432, 854
PaeI	GCATGC	2 cut(s)	432, 854
PaeR7I	CTCGAG	1 cut(s)	917
PciI	ACATGT	1 cut(s)	283
PctI	GAATGC	1 cut(s)	697
PdmI	GAANNNNTTC	1 cut(s)	1030
PfeI	GAWTC	8 cut(s)	50, 317, 389, 662, 818, 1109, 1142, 1156
PkrI	GCNGC	1 cut(s)	1059
PleI	GAGTC	3 cut(s)	173, 799, 1120
PpsI	GAGTC	3 cut(s)	173, 799, 1120
PscI	ACATGT	1 cut(s)	283
PsiI	TTATAA	1 cut(s)	632
Psp6I	CCWGG	2 cut(s)	84, 523
PspGI	CCWGG	2 cut(s)	84, 523
PspXI	VCTCGAGB	1 cut(s)	917
PsuI	RGATCY	2 cut(s)	401, 830
PvuII	CAGCTG	1 cut(s)	815
RsaI	GTAC	5 cut(s)	38, 83, 117, 443, 706
RsaNI	GTAC	5 cut(s)	37, 82, 116, 442, 705
RseI	CAYNNNNRTG	1 cut(s)	571
SaqAI	TTAA	3 cut(s)	96, 138, 723
SatI	GCNGC	1 cut(s)	1058
Sau3AI	GATC	3 cut(s)	109, 401, 830
SchI	GAGTC	3 cut(s)	173, 800, 1120
ScrFI	CCNGG	2 cut(s)	86, 525
SfaNI	GCATC	2 cut(s)	150, 1087
SfcI	CTRYAG	1 cut(s)	639
Sfr274I	CTCGAG	1 cut(s)	917
SlaI	CTCGAG	1 cut(s)	917
SmiMI	CAYNNNNRTG	1 cut(s)	571
SmlI	CTYRAG	2 cut(s)	445, 917
SmoI	CTYRAG	2 cut(s)	445, 917
SphI	GCATGC	2 cut(s)	432, 854
Sse9I	AATT	8 cut(s)	44, 98, 247, 484, 581, 720, 855, 1002
SsiI	CCGC	2 cut(s)	644, 828
SspI	AATATT	1 cut(s)	868
SspMI	CTAG	2 cut(s)	696, 1162
StyD4I	CCNGG	2 cut(s)	84, 523
StyI	CCWWGG	1 cut(s)	457
TaaI	ACNGT	5 cut(s)	94, 124, 599, 786, 983
TaqI	TCGA	2 cut(s)	797, 918
TasI	AATT	8 cut(s)	44, 98, 247, 484, 581, 720, 855, 1002
TatI	WGTACW	2 cut(s)	441, 704
TfiI	GAWTC	8 cut(s)	50, 317, 389, 662, 818, 1109, 1142, 1156
Tru1I	TTAA	3 cut(s)	96, 138, 723
Tru9I	TTAA	3 cut(s)	96, 138, 723
TscAI	CASTG	3 cut(s)	583, 850, 946
TseFI	GTSAC	3 cut(s)	176, 564, 599
TseI	GCWGC	1 cut(s)	1057
Tsp45I	GTSAC	3 cut(s)	176, 564, 599
TspDTI	ATGAA	7 cut(s)	174, 597, 606, 639, 795, 944, 953
TspGWI	ACGGA	1 cut(s)	899
TspRI	CASTG	3 cut(s)	583, 850, 946
XapI	RAATTY	5 cut(s)	44, 98, 484, 581, 1002
XceI	RCATGY	3 cut(s)	287, 432, 854
XhoI	CTCGAG	1 cut(s)	917
XmnI	GAANNNNTTC	1 cut(s)	1030
XspI	CTAG	2 cut(s)	696, 1162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.