Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0004731

Physical Location & Seq

Genomic Coordinates Forward (+)

15925399 .. 15927823

Gene Structure 2425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g15830.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGATCAGTATGGATGTGAAAGGTATAACCTGGGTTGGGGGTGTATACCAGAAATTTGAGACAATGTGCTTGGAGGTAGAAGAAGATATGTACCAGGACACAGTCAAATTTGTTGAAAATCAGGTACAGACTGTTGGTGCAAGTGTTAAGAAGTTCTATGCAGATGTAATGCAAGATTTGGTTTGTGACTCTGCAATGGATCCAGAGGCTGTGCCTGCCTCTGGGGACCCTGTAGAAAATAATTTTCATGTTGATAGTTCTAAAAAATCAAAGGTTAGCAAGAAAGGAGAGCCGGTAAAAGTTGACGTTGAAAAAGTAAATGGGGATTCAGAGGTGATTACTGCAATGAATATGAATGTGGACCATAAATCATTGTTCCATGGACAGCACATGGATGAATATCGCATGCTATCCTCAGGGAATTGTGCAAGAGGAGCGTGCTTTGATGTATACTCAAGACAAGACCATGATAGGAGTAATTTTAATAATTCAAACTCGGTAGTCAAAGAAAACCCAATCAAGGACAGATTTCCCAGGGCAATAACTCCTGTTGAATCTGATTTGAGCAGGCACTCAACATCCTGCTGTGTAAATTTGGATGATACCCATGAAGTTTCGAGCGACCATAGAGATACAACTATAACCCCATCTATAACCGAAGGTATAACGTGTAAGTTCACAAGGGAAAGTTGTGTGATTGCAAATGCAAGCCAATGTATAGCTGATGCTTCAGTTGACTGCCGAACATCTAATATGTTTGTTTTGGATGAATTGGAAGCAAAAGGGTGGAAGGAAATATTAGATTCATCCTTTGGTTGCTCATCAGTAGAAAGAAATGGATCCTCTCCAAGTGGACAAGCACACTCTGAAAAAAATGCTGACAAGGAAATCTCTTCGTCTCATCCTGGAGGCTTGCATGACTCCAATTTTCATGCAACTGAGAGTAATACTGTTGTAGATGGAACGGAAACCATTCAACAATCTGAAAGGGCAAAGCTTGAGGAGACTTGTGTAATGGTGACTGGTGAGGATGTTCATTTTGTTCCTCATATGGAAGGCAAGCGTAGGCCTTACAAGAAAAAAATTCAGAATGCTTTGAGAATGAGGTCAGCAAGGAAGCAAGAGTATGAGCAGCTTGCATTATGGTATGGGGATGACGGGAAATCAAATGTAGAAAGTGGCGAACGTCTCGGGCATTCTCTGACTGTGGAGGAGACACAGAAATCACCAGCTCATGAATTTTGTGAATCTGAATGGGAGATTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

423

Amino Acids

47.04

Weight (kDa)

5.05

Isoelectric Point (pI)

37.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130
fragaria_vesca	FvH4_6g27121 FvH4_6g27121
malus_domestica	MD09G1239700.v1.1 MD17G1232800.v1.1
prunus_persica	Prupe.3G122900_v2.0.a1
pyrus_communis	pycom09g15830 pycom17g23540 pycom17g23560
rosa_chinensis	RchiOBHm_Chr2g0128471 RchiOBHm_Chr2g0128481 RchiOBHm_Chr2g0129081
rosa_laevigata	RLG00000019053
rosa_multiflora	Rmu_ssc0000449.1_g000008
rosa_roxburghii	Rroxscaffold_2G00114890
rosa_rugosa	Rorug02G0284300.1 Rorug02G0284400 Rorug02G0284500
rosa_samantha	Rh2AG336700 Rh2BG344700 Rh2CG324000 Rh2DG361600 Rh3BG289900 Rh5AG278500
rosa_wichuraiana	Rw2G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	45, 450
AclWI	GGATC	4 cut(s)	194, 207, 834, 847
AcsI	RAATTY	5 cut(s)	53, 107, 592, 1083, 1238
AcuI	CTGAAG	1 cut(s)	714
AfaI	GTAC	2 cut(s)	92, 126
AfiI	CCNNNNNNNGG	3 cut(s)	36, 221, 520
AflIII	ACRYGT	1 cut(s)	668
AgsI	TTSAA	5 cut(s)	116, 311, 492, 554, 977
AjnI	CCWGG	4 cut(s)	29, 93, 533, 904
AluBI	AGCT	4 cut(s)	722, 997, 1135, 1232
AluI	AGCT	4 cut(s)	722, 997, 1135, 1232
Alw26I	GTCTC	5 cut(s)	53, 903, 998, 1193, 1208
AlwI	GGATC	4 cut(s)	194, 207, 834, 847
AlwNI	CAGNNNCTG	1 cut(s)	209
Ama87I	CYCGRG	1 cut(s)	1190
AoxI	GGCC	1 cut(s)	1067
ApeKI	GCWGC	1 cut(s)	1132
ApoI	RAATTY	5 cut(s)	53, 107, 592, 1083, 1238
Asp700I	GAANNNNTTC	1 cut(s)	972
AspS9I	GGNCC	2 cut(s)	226, 361
AsuHPI	GGTGA	4 cut(s)	346, 1030, 1037, 1218
AvaI	CYCGRG	1 cut(s)	1190
AvaII	GGWCC	2 cut(s)	226, 361
AxyI	CCTNAGG	1 cut(s)	415
BamHI	GGATCC	2 cut(s)	199, 839
BbvI	GCAGC	1 cut(s)	1144
BccI	CCATC	2 cut(s)	655, 953
BciT130I	CCWGG	4 cut(s)	31, 95, 535, 906
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	5 cut(s)	53, 903, 998, 1193, 1208
BfaI	CTAG	1 cut(s)	1267
BfmI	CTRYAG	1 cut(s)	231
BisI	GCNGC	1 cut(s)	1133
BlsI	GCNGC	1 cut(s)	1134
Bme1390I	CCNGG	4 cut(s)	31, 95, 535, 906
Bme18I	GGWCC	2 cut(s)	226, 361
BmeT110I	CYCGRG	1 cut(s)	1190
BmgT120I	GGNCC	2 cut(s)	226, 361
BmiI	GGNNCC	4 cut(s)	201, 227, 228, 841
BmrFI	CCNGG	4 cut(s)	31, 95, 535, 906
BmsI	GCATC	1 cut(s)	715
BpmI	CTGGAG	1 cut(s)	927
BpuEI	CTTGAG	2 cut(s)	439, 1019
BsaBI	GATNNNNATC	1 cut(s)	399
BsaJI	CCNNGG	4 cut(s)	30, 379, 533, 534
BsaXI	ACNNNNNCTCC	2 cut(s)	279, 309
Bsc4I	CCNNNNNNNGG	3 cut(s)	36, 221, 520
Bse118I	RCCGGY	1 cut(s)	292
Bse1I	ACTGG	1 cut(s)	1027
Bse21I	CCTNAGG	1 cut(s)	415
Bse3DI	GCAATG	2 cut(s)	201, 351
Bse8I	GATNNNNATC	1 cut(s)	399
BseBI	CCWGG	4 cut(s)	31, 95, 535, 906
BseDI	CCNNGG	4 cut(s)	30, 379, 533, 534
BseGI	GGATG	9 cut(s)	19, 400, 578, 604, 772, 806, 901, 1036, 1159
BseJI	GATNNNNATC	1 cut(s)	399
BseLI	CCNNNNNNNGG	3 cut(s)	36, 221, 520
BseMI	GCAATG	2 cut(s)	201, 351
BseMII	CTCAG	2 cut(s)	429, 930
BseNI	ACTGG	1 cut(s)	1027
BseRI	GAGGAG	3 cut(s)	447, 1016, 1226
BseXI	GCAGC	1 cut(s)	1144
BshFI	GGCC	1 cut(s)	1069
BsiHKCI	CYCGRG	1 cut(s)	1190
BsiSI	CCGG	1 cut(s)	293
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	3 cut(s)	36, 221, 520
BsmAI	GTCTC	5 cut(s)	53, 903, 998, 1193, 1208
BsmBI	CGTCTC	2 cut(s)	903, 1193
BsmFI	GGGAC	1 cut(s)	239
BsmI	GAATGC	2 cut(s)	1096, 1195
BsnI	GGCC	1 cut(s)	1069
BsoBI	CYCGRG	1 cut(s)	1190
Bsp143I	GATC	3 cut(s)	3, 199, 839
Bsp19I	CCATGG	1 cut(s)	379
BspANI	GGCC	1 cut(s)	1069
BspCNI	CTCAG	2 cut(s)	428, 931
BspHI	TCATGA	1 cut(s)	1234
BspLI	GGNNCC	4 cut(s)	201, 227, 228, 841
BspPI	GGATC	4 cut(s)	194, 207, 834, 847
BsrDI	GCAATG	2 cut(s)	201, 351
BsrFI	RCCGGY	1 cut(s)	292
BsrI	ACTGG	1 cut(s)	1027
BssAI	RCCGGY	1 cut(s)	292
BssECI	CCNNGG	4 cut(s)	30, 379, 533, 534
BssMI	GATC	3 cut(s)	3, 199, 839
BssNAI	GTATAC	2 cut(s)	46, 451
BssT1I	CCWWGG	1 cut(s)	379
Bst1107I	GTATAC	2 cut(s)	46, 451
Bst2UI	CCWGG	4 cut(s)	31, 95, 535, 906
Bst4CI	ACNGT	4 cut(s)	103, 133, 952, 1207
Bst6I	CTCTTC	1 cut(s)	898
BstC8I	GCNNGC	8 cut(s)	216, 407, 439, 569, 709, 914, 1061, 1137
BstDEI	CTNAG	2 cut(s)	415, 939
BstDSI	CCRYGG	1 cut(s)	379
BstF5I	GGATG	9 cut(s)	19, 400, 578, 604, 772, 806, 901, 1036, 1159
BstKTI	GATC	3 cut(s)	6, 202, 842
BstMAI	GTCTC	5 cut(s)	53, 903, 998, 1193, 1208
BstMBI	GATC	3 cut(s)	3, 199, 839
BstMWI	GCNNNNNNNGC	2 cut(s)	215, 434
BstNI	CCWGG	4 cut(s)	31, 95, 535, 906
BstNSI	RCATGY	1 cut(s)	409
BstSCI	CCNGG	4 cut(s)	29, 93, 533, 904
BstSFI	CTRYAG	1 cut(s)	231
BstV1I	GCAGC	1 cut(s)	1144
BstX2I	RGATCY	2 cut(s)	199, 839
BstYI	RGATCY	2 cut(s)	199, 839
BstZ17I	GTATAC	2 cut(s)	46, 451
Bsu36I	CCTNAGG	1 cut(s)	415
BsuRI	GGCC	1 cut(s)	1069
BtgI	CCRYGG	1 cut(s)	379
BtsCI	GGATG	9 cut(s)	19, 400, 578, 604, 772, 806, 901, 1036, 1159
Cac8I	GCNNGC	8 cut(s)	216, 407, 439, 569, 709, 914, 1061, 1137
CaiI	CAGNNNCTG	1 cut(s)	209
CciI	TCATGA	1 cut(s)	1234
Cfr10I	RCCGGY	1 cut(s)	292
Cfr13I	GGNCC	2 cut(s)	226, 361
Csp6I	GTAC	2 cut(s)	91, 125
CviAII	CATG	9 cut(s)	248, 380, 391, 406, 467, 608, 917, 932, 1235
CviJI	RGCY	9 cut(s)	209, 292, 711, 722, 912, 997, 1069, 1135, 1232
CviKI_1	RGCY	9 cut(s)	209, 292, 711, 722, 912, 997, 1069, 1135, 1232
CviQI	GTAC	2 cut(s)	91, 125
DdeI	CTNAG	2 cut(s)	415, 939
DpnI	GATC	3 cut(s)	5, 201, 841
DpnII	GATC	3 cut(s)	3, 199, 839
Eam1104I	CTCTTC	1 cut(s)	898
EarI	CTCTTC	1 cut(s)	898
Eco130I	CCWWGG	1 cut(s)	379
Eco147I	AGGCCT	1 cut(s)	1069
Eco47I	GGWCC	2 cut(s)	226, 361
Eco57I	CTGAAG	1 cut(s)	714
Eco81I	CCTNAGG	1 cut(s)	415
Eco88I	CYCGRG	1 cut(s)	1190
EcoO109I	RGGNCCY	1 cut(s)	226
EcoRII	CCWGG	4 cut(s)	29, 93, 533, 904
EcoT14I	CCWWGG	1 cut(s)	379
ErhI	CCWWGG	1 cut(s)	379
Esp3I	CGTCTC	2 cut(s)	903, 1193
FaeI	CATG	9 cut(s)	251, 383, 394, 409, 470, 611, 920, 935, 1238
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	9 cut(s)	247, 379, 390, 405, 466, 607, 916, 931, 1234
FauNDI	CATATG	1 cut(s)	1050
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	2 cut(s)	45, 450
Fnu4HI	GCNGC	1 cut(s)	1133
FokI	GGATG	9 cut(s)	26, 407, 565, 611, 779, 793, 888, 1043, 1166
Fsp4HI	GCNGC	1 cut(s)	1133
FspBI	CTAG	1 cut(s)	1267
GluI	GCNGC	1 cut(s)	1133
GsuI	CTGGAG	1 cut(s)	927
HaeIII	GGCC	1 cut(s)	1069
HapII	CCGG	1 cut(s)	293
Hin1II	CATG	9 cut(s)	251, 383, 394, 409, 470, 611, 920, 935, 1238
HincII	GTYRAC	2 cut(s)	304, 736
HindII	GTYRAC	2 cut(s)	304, 736
HindIII	AAGCTT	1 cut(s)	995
HinfI	GANTC	7 cut(s)	188, 326, 554, 803, 920, 1247, 1261
HpaII	CCGG	1 cut(s)	293
HphI	GGTGA	4 cut(s)	346, 1030, 1037, 1218
Hpy166II	GTNNAC	7 cut(s)	46, 304, 361, 451, 678, 736, 854
Hpy188I	TCNGA	7 cut(s)	331, 559, 868, 985, 1089, 1203, 1252
Hpy188III	TCNNGA	3 cut(s)	203, 456, 1235
Hpy8I	GTNNAC	7 cut(s)	46, 304, 361, 451, 678, 736, 854
HpyAV	CCTTC	3 cut(s)	653, 784, 1049
HpyCH4III	ACNGT	4 cut(s)	103, 133, 952, 1207
HpyCH4IV	ACGT	3 cut(s)	306, 668, 1186
HpyF10VI	GCNNNNNNNGC	2 cut(s)	215, 434
HpyF3I	CTNAG	2 cut(s)	415, 939
HpySE526I	ACGT	3 cut(s)	306, 668, 1186
Hsp92II	CATG	9 cut(s)	251, 383, 394, 409, 470, 611, 920, 935, 1238
KflI	GGGWCCC	1 cut(s)	226
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 199, 839
LmnI	GCTCC	1 cut(s)	434
Lsp1109I	GCAGC	1 cut(s)	1144
LweI	GCATC	1 cut(s)	715
MaeI	CTAG	1 cut(s)	1267
MaeII	ACGT	3 cut(s)	306, 668, 1186
MaeIII	GTNAC	2 cut(s)	185, 1018
MalI	GATC	3 cut(s)	5, 201, 841
MboI	GATC	3 cut(s)	3, 199, 839
MboII	GAAGA	3 cut(s)	92, 95, 885
MflI	RGATCY	2 cut(s)	199, 839
MlyI	GAGTC	2 cut(s)	182, 914
MroXI	GAANNNNTTC	1 cut(s)	972
MseI	TTAA	2 cut(s)	147, 483
MslI	CAYNNNNRTG	1 cut(s)	393
MspI	CCGG	1 cut(s)	293
MspR9I	CCNGG	4 cut(s)	31, 95, 535, 906
Mva1269I	GAATGC	2 cut(s)	1096, 1195
MvaI	CCWGG	4 cut(s)	31, 95, 535, 906
MwoI	GCNNNNNNNGC	2 cut(s)	215, 434
NcoI	CCATGG	1 cut(s)	379
NdeI	CATATG	1 cut(s)	1050
NdeII	GATC	3 cut(s)	3, 199, 839
NlaIII	CATG	9 cut(s)	251, 383, 394, 409, 470, 611, 920, 935, 1238
NlaIV	GGNNCC	4 cut(s)	201, 227, 228, 841
NmuCI	GTSAC	2 cut(s)	185, 1018
NspI	RCATGY	1 cut(s)	409
PaeI	GCATGC	1 cut(s)	409
PagI	TCATGA	1 cut(s)	1234
PasI	CCCWGGG	1 cut(s)	534
PceI	AGGCCT	1 cut(s)	1069
PctI	GAATGC	2 cut(s)	1096, 1195
PdmI	GAANNNNTTC	1 cut(s)	972
PfeI	GAWTC	5 cut(s)	326, 554, 803, 1247, 1261
PflFI	GACNNNGTC	1 cut(s)	101
PfoI	TCCNGGA	1 cut(s)	904
PkrI	GCNGC	1 cut(s)	1134
PleI	GAGTC	2 cut(s)	182, 914
PpsI	GAGTC	2 cut(s)	182, 914
PpuMI	RGGWCCY	1 cut(s)	226
Psp5II	RGGWCCY	1 cut(s)	226
Psp6I	CCWGG	4 cut(s)	29, 93, 533, 904
PspGI	CCWGG	4 cut(s)	29, 93, 533, 904
PspN4I	GGNNCC	4 cut(s)	201, 227, 228, 841
PspPI	GGNCC	2 cut(s)	226, 361
PspPPI	RGGWCCY	1 cut(s)	226
PstNI	CAGNNNCTG	1 cut(s)	209
PsuI	RGATCY	2 cut(s)	199, 839
PsyI	GACNNNGTC	1 cut(s)	101
RsaI	GTAC	2 cut(s)	92, 126
RsaNI	GTAC	2 cut(s)	91, 125
RseI	CAYNNNNRTG	1 cut(s)	393
SaqAI	TTAA	2 cut(s)	147, 483
SatI	GCNGC	1 cut(s)	1133
Sau3AI	GATC	3 cut(s)	3, 199, 839
Sau96I	GGNCC	2 cut(s)	226, 361
SchI	GAGTC	2 cut(s)	182, 914
ScrFI	CCNGG	4 cut(s)	31, 95, 535, 906
SfaNI	GCATC	1 cut(s)	715
SfcI	CTRYAG	1 cut(s)	231
SinI	GGWCC	2 cut(s)	226, 361
SmiMI	CAYNNNNRTG	1 cut(s)	393
SmlI	CTYRAG	2 cut(s)	454, 998
SmoI	CTYRAG	2 cut(s)	454, 998
SphI	GCATGC	1 cut(s)	409
SseBI	AGGCCT	1 cut(s)	1069
SspI	AATATT	1 cut(s)	798
SspMI	CTAG	1 cut(s)	1267
StuI	AGGCCT	1 cut(s)	1069
StyD4I	CCNGG	4 cut(s)	29, 93, 533, 904
StyI	CCWWGG	1 cut(s)	379
TaaI	ACNGT	4 cut(s)	103, 133, 952, 1207
TaiI	ACGT	3 cut(s)	309, 671, 1189
TaqI	TCGA	1 cut(s)	617
TfiI	GAWTC	5 cut(s)	326, 554, 803, 1247, 1261
Tru1I	TTAA	2 cut(s)	147, 483
Tru9I	TTAA	2 cut(s)	147, 483
TseFI	GTSAC	2 cut(s)	185, 1018
TseI	GCWGC	1 cut(s)	1132
Tsp45I	GTSAC	2 cut(s)	185, 1018
TspGWI	ACGGA	1 cut(s)	980
Tth111I	GACNNNGTC	1 cut(s)	101
VpaK11BI	GGWCC	2 cut(s)	226, 361
XapI	RAATTY	5 cut(s)	53, 107, 592, 1083, 1238
XceI	RCATGY	1 cut(s)	409
XmiI	GTMKAC	2 cut(s)	45, 450
XmnI	GAANNNNTTC	1 cut(s)	972
XspI	CTAG	1 cut(s)	1267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.