Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004731

Physical Location & Seq

Genomic Coordinates Reverse (-)

37666055 .. 37671624

Gene Structure 5570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG278500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGACAGGAGTCCAAGGAGGAGAAGAAAGAGCGGAAGGAAATCAAAAGTGAGCGACGTAGTGATTTCCGCTTCTCTAAAGGTTGAACCATGGAAGGTCAAAAAGCCTATTAGGTGGAAAAGTATTAAGCAACTGACATCTTCAAAGAATGCGAGAGACCACTTCAATTCCTGTGAGCTGGTGAATGTGATCTGCTACGGCATTTGGTCTGAAGATGTATGCGACTATTATATAAACTTTCTTCCTTTGGGAGAAACGGAGACTCTGAAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

91

Amino Acids

10.65

Weight (kDa)

9.86

Isoelectric Point (pI)

52.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130
fragaria_vesca	FvH4_6g27121 FvH4_6g27121
malus_domestica	MD09G1239700.v1.1 MD17G1232800.v1.1
prunus_persica	Prupe.3G122900_v2.0.a1
pyrus_communis	pycom09g15830 pycom17g23540 pycom17g23560
rosa_chinensis	RchiOBHm_Chr2g0128471 RchiOBHm_Chr2g0128481 RchiOBHm_Chr2g0129081
rosa_laevigata	RLG00000019053
rosa_multiflora	Rmu_ssc0000449.1_g000008
rosa_roxburghii	Rroxscaffold_2G00114890
rosa_rugosa	Rorug02G0284300.1 Rorug02G0284400 Rorug02G0284500
rosa_samantha	Rh2AG336700 Rh2BG344700 Rh2CG324000 Rh2DG361600 Rh3BG289900 Rh5AG278500
rosa_wichuraiana	Rw2G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	33
AciI	CCGC	2 cut(s)	33, 69
AcuI	CTGAAG	1 cut(s)	231
AgsI	TTSAA	3 cut(s)	86, 144, 166
AluBI	AGCT	1 cut(s)	178
AluI	AGCT	1 cut(s)	178
Alw26I	GTCTC	2 cut(s)	150, 254
AsuHPI	GGTGA	1 cut(s)	193
BceAI	ACGGC	1 cut(s)	214
BcoDI	GTCTC	2 cut(s)	150, 254
BoxI	GACNNNNGTC	1 cut(s)	9
BsaI	GGTCTC	1 cut(s)	150
BsaJI	CCNNGG	2 cut(s)	14, 89
BseDI	CCNNGG	2 cut(s)	14, 89
BseRI	GAGGAG	1 cut(s)	34
BsmAI	GTCTC	2 cut(s)	150, 254
BsmI	GAATGC	1 cut(s)	154
Bso31I	GGTCTC	1 cut(s)	150
Bsp143I	GATC	1 cut(s)	189
Bsp19I	CCATGG	1 cut(s)	89
BspACI	CCGC	2 cut(s)	33, 69
BspTNI	GGTCTC	1 cut(s)	150
BsrBI	CCGCTC	1 cut(s)	33
BssECI	CCNNGG	2 cut(s)	14, 89
BssMI	GATC	1 cut(s)	189
BssT1I	CCWWGG	2 cut(s)	14, 89
BstDSI	CCRYGG	1 cut(s)	89
BstKTI	GATC	1 cut(s)	192
BstMAI	GTCTC	2 cut(s)	150, 254
BstMBI	GATC	1 cut(s)	189
BstPAI	GACNNNNGTC	1 cut(s)	9
BtgI	CCRYGG	1 cut(s)	89
CviAII	CATG	1 cut(s)	90
CviJI	RGCY	2 cut(s)	106, 178
CviKI_1	RGCY	2 cut(s)	106, 178
DpnI	GATC	1 cut(s)	191
DpnII	GATC	1 cut(s)	189
Eco130I	CCWWGG	2 cut(s)	14, 89
Eco31I	GGTCTC	1 cut(s)	150
Eco57I	CTGAAG	1 cut(s)	231
EcoT14I	CCWWGG	2 cut(s)	14, 89
ErhI	CCWWGG	2 cut(s)	14, 89
FaeI	CATG	1 cut(s)	93
FaiI	YATR	4 cut(s)	91, 220, 231, 233
FatI	CATG	1 cut(s)	89
Hin1II	CATG	1 cut(s)	93
HinfI	GANTC	2 cut(s)	10, 262
HphI	GGTGA	1 cut(s)	193
Hpy188I	TCNGA	2 cut(s)	211, 267
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	2 cut(s)	30, 88
HpyCH4IV	ACGT	1 cut(s)	57
HpySE526I	ACGT	1 cut(s)	57
Hsp92II	CATG	1 cut(s)	93
Kzo9I	GATC	1 cut(s)	189
LpnPI	CCDG	2 cut(s)	164, 184
MaeII	ACGT	1 cut(s)	57
MalI	GATC	1 cut(s)	191
MbiI	CCGCTC	1 cut(s)	33
MboI	GATC	1 cut(s)	189
MboII	GAAGA	4 cut(s)	36, 132, 224, 233
MluCI	AATT	1 cut(s)	166
MlyI	GAGTC	2 cut(s)	19, 256
MnlI	CCTC	1 cut(s)	12
MseI	TTAA	1 cut(s)	126
Mva1269I	GAATGC	1 cut(s)	154
NcoI	CCATGG	1 cut(s)	89
NdeII	GATC	1 cut(s)	189
NlaIII	CATG	1 cut(s)	93
PctI	GAATGC	1 cut(s)	154
PleI	GAGTC	2 cut(s)	18, 256
PpsI	GAGTC	2 cut(s)	18, 256
PshAI	GACNNNNGTC	1 cut(s)	9
SaqAI	TTAA	1 cut(s)	126
Sau3AI	GATC	1 cut(s)	189
SchI	GAGTC	2 cut(s)	19, 256
SetI	ASST	5 cut(s)	60, 84, 99, 116, 180
SgeI	CNNG	6 cut(s)	19, 27, 102, 165, 183, 191
Sse9I	AATT	1 cut(s)	166
SsiI	CCGC	2 cut(s)	33, 69
StyI	CCWWGG	2 cut(s)	14, 89
TaiI	ACGT	1 cut(s)	60
TasI	AATT	1 cut(s)	166
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TspGWI	ACGGA	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.