Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004731

Physical Location & Seq

Genomic Coordinates Reverse (-)

20826296 .. 20832148

Gene Structure 5853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g27121.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGATCACTATGGATGTCAAAGGTATAACCTGGGTTGGGTGTGTGTACGAGAAATTTGAATCTATGTGCTTGGAGGTAGAAGAAAATATGTATGAGGACACAGTTAAATTTGTTGAAGATCAGGTACAGACTGTTGGGGAGAGTGTTAAAAAGTTTTATGCAGATGTAATGCAAGATTTGCTCTGTGACTCTTCATTGGATCGAGATGACGTATCAGCCGGTGGTTTTCCTGTTGAACATTATTCAGATGTTGATAACTCTAAATCAAAGATCAGAAAAAAGAAAGAACATGTAAAGGCTGGTGTTGAAGAAGTTAAAGGGGATTCAGAGGTGATTTCTGCCGTGTTGAAGGATGTGGACCATACAGGATTGTTCCATAGACAGCGTGTGTATGATTCTTGCACAAAATCCTCAGGCAATTGTGCCAAATTAGCGTGCTCCAGACAAGACCATGGTGTGAGAAGTTGTAATAAGAAAATTGTTGTCAGAGAAACTCCAATCAAGGACAGACTGCCAGGGGCAAATACTGCTGTTGGAAAAGATTTCAGCAGAGAATCACTATCATCATGCAGTGAATTTTCAAATGAAGACCGTGACACTTCATGTGACCAACCAGATGAAGTTATAACTCCTTCTAAACCACCCGAAGGTATGAGATGTGATTCCATGAGTGAAAGTTGTGTTGTCGCAAATGCTAGCCAATGCACAGGTGATGATGTCTCAGTCAACTGCCAGTCATCTGATATGATCGTTTTGGATAATTCTGATGGAAAAAGATGGAATGAGCTATTGGATTCATCAATTGGTGGGTTATCAACAGAATTAAATGGTGGATCTATTAATCCCAGCATGGATGCAATTGAGAGTAATATTGGTACACATGGTACGGAAATCATTCAACAATCTGACAAGCCAAAGCTCGAGGAAACTTGTGTGATGGTGAGTGGTGAAGACCTTCATTTTGTTCATCACACGGTAGCCAACTATAAGCCTTACAAGAAAAAAATTCCAAAAGCCTTCACTTCGAGAACGAGTTCAGCAAGGAAGCAAGAATACGAGCAGCTTGCTTTATGGCATGGACATCATACAAAGTCAATTTTGGAAGGTGGAGAAGAGTCTAAGAAATCCCCAACTCATGATTTTTGCGAATCTGAATGGGAAATTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

390

Amino Acids

43.16

Weight (kDa)

5.04

Isoelectric Point (pI)

49.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130
fragaria_vesca	FvH4_6g27121 FvH4_6g27121
malus_domestica	MD09G1239700.v1.1 MD17G1232800.v1.1
prunus_persica	Prupe.3G122900_v2.0.a1
pyrus_communis	pycom09g15830 pycom17g23540 pycom17g23560
rosa_chinensis	RchiOBHm_Chr2g0128471 RchiOBHm_Chr2g0128481 RchiOBHm_Chr2g0129081
rosa_laevigata	RLG00000019053
rosa_multiflora	Rmu_ssc0000449.1_g000008
rosa_roxburghii	Rroxscaffold_2G00114890
rosa_rugosa	Rorug02G0284300.1 Rorug02G0284400 Rorug02G0284500
rosa_samantha	Rh2AG336700 Rh2BG344700 Rh2CG324000 Rh2DG361600 Rh3BG289900 Rh5AG278500
rosa_wichuraiana	Rw2G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	626
AclWI	GGATC	2 cut(s)	207, 841
AcsI	RAATTY	5 cut(s)	53, 107, 575, 1005, 1161
AfaI	GTAC	4 cut(s)	47, 126, 877, 886
AfiI	CCNNNNNNNGG	2 cut(s)	36, 647
AflIII	ACRYGT	1 cut(s)	289
AgsI	TTSAA	7 cut(s)	59, 116, 236, 308, 349, 582, 899
AjnI	CCWGG	2 cut(s)	29, 514
AjuI	GAANNNNNNNTTGG	2 cut(s)	773, 805
AluBI	AGCT	3 cut(s)	787, 919, 1063
AluI	AGCT	3 cut(s)	787, 919, 1063
Alw21I	GWGCWC	1 cut(s)	440
Alw26I	GTCTC	1 cut(s)	724
AlwI	GGATC	2 cut(s)	207, 841
Ama87I	CYCGRG	1 cut(s)	920
ApeKI	GCWGC	1 cut(s)	1060
ApoI	RAATTY	5 cut(s)	53, 107, 575, 1005, 1161
ArsI	GACNNNNNNTTYG	2 cut(s)	944, 976
AseI	ATTAAT	1 cut(s)	840
Asp700I	GAANNNNTTC	3 cut(s)	894, 954, 1033
AspS9I	GGNCC	1 cut(s)	358
AsuHPI	GGTGA	4 cut(s)	343, 722, 952, 959
AsuNHI	GCTAGC	1 cut(s)	695
AvaI	CYCGRG	1 cut(s)	920
AvaII	GGWCC	1 cut(s)	358
AxyI	CCTNAGG	1 cut(s)	412
BarI	GAAGNNNNNNTAC	4 cut(s)	108, 140, 1037, 1069
BbsI	GAAGAC	2 cut(s)	594, 957
Bbv12I	GWGCWC	1 cut(s)	440
BbvI	GCAGC	1 cut(s)	1072
BccI	CCATC	3 cut(s)	761, 771, 931
BceAI	ACGGC	1 cut(s)	326
BcgI	CGANNNNNNTGC	2 cut(s)	1046, 1080
BciT130I	CCWGG	2 cut(s)	31, 516
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	724
BfaI	CTAG	2 cut(s)	696, 1168
BisI	GCNGC	1 cut(s)	1061
BlsI	GCNGC	1 cut(s)	1062
Bme1390I	CCNGG	2 cut(s)	31, 516
Bme18I	GGWCC	1 cut(s)	358
BmeT110I	CYCGRG	1 cut(s)	920
BmgT120I	GGNCC	1 cut(s)	358
BmrFI	CCNGG	2 cut(s)	31, 516
BmsI	GCATC	1 cut(s)	844
BmtI	GCTAGC	1 cut(s)	699
BpiI	GAAGAC	2 cut(s)	594, 957
BpmI	CTGGAG	1 cut(s)	424
BsaJI	CCNNGG	3 cut(s)	30, 451, 515
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 647
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	1 cut(s)	733
Bse21I	CCTNAGG	1 cut(s)	412
BseBI	CCWGG	2 cut(s)	31, 516
BseDI	CCNNGG	3 cut(s)	30, 451, 515
BseGI	GGATG	3 cut(s)	19, 358, 859
BseLI	CCNNNNNNNGG	2 cut(s)	36, 647
BseMII	CTCAG	2 cut(s)	426, 735
BseNI	ACTGG	1 cut(s)	733
BseXI	GCAGC	1 cut(s)	1072
BseYI	CCCAGC	1 cut(s)	845
BsiHKAI	GWGCWC	1 cut(s)	440
BsiHKCI	CYCGRG	1 cut(s)	920
BsiSI	CCGG	1 cut(s)	219
BslI	CCNNNNNNNGG	2 cut(s)	36, 647
BsmAI	GTCTC	1 cut(s)	724
BsoBI	CYCGRG	1 cut(s)	920
Bsp1286I	GDGCHC	1 cut(s)	440
Bsp143I	GATC	6 cut(s)	3, 118, 199, 270, 747, 833
Bsp19I	CCATGG	1 cut(s)	451
BspCNI	CTCAG	2 cut(s)	425, 734
BspHI	TCATGA	1 cut(s)	1135
BspOI	GCTAGC	1 cut(s)	699
BspPI	GGATC	2 cut(s)	207, 841
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	733
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	3 cut(s)	30, 451, 515
BssMI	GATC	6 cut(s)	3, 118, 199, 270, 747, 833
BssT1I	CCWWGG	1 cut(s)	451
Bst2UI	CCWGG	2 cut(s)	31, 516
Bst4CI	ACNGT	4 cut(s)	103, 133, 593, 976
Bst6I	CTCTTC	2 cut(s)	196, 1107
BstAPI	GCANNNNNTGC	2 cut(s)	178, 527
BstC8I	GCNNGC	3 cut(s)	436, 697, 1065
BstDEI	CTNAG	3 cut(s)	412, 721, 1119
BstDSI	CCRYGG	1 cut(s)	451
BstF5I	GGATG	3 cut(s)	19, 358, 859
BstKTI	GATC	6 cut(s)	6, 121, 202, 273, 750, 836
BstMAI	GTCTC	1 cut(s)	724
BstMBI	GATC	6 cut(s)	3, 118, 199, 270, 747, 833
BstMWI	GCNNNNNNNGC	3 cut(s)	178, 431, 527
BstNI	CCWGG	2 cut(s)	31, 516
BstNSI	RCATGY	1 cut(s)	293
BstSCI	CCNGG	2 cut(s)	29, 514
BstV1I	GCAGC	1 cut(s)	1072
BstV2I	GAAGAC	2 cut(s)	594, 957
BstX2I	RGATCY	1 cut(s)	833
BstYI	RGATCY	1 cut(s)	833
Bsu36I	CCTNAGG	1 cut(s)	412
BtgI	CCRYGG	1 cut(s)	451
BtsCI	GGATG	3 cut(s)	19, 358, 859
BtsI	GCAGTG	1 cut(s)	577
BtsIMutI	CAGTG	1 cut(s)	577
Cac8I	GCNNGC	3 cut(s)	436, 697, 1065
CciI	TCATGA	1 cut(s)	1135
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	1 cut(s)	358
Csp6I	GTAC	4 cut(s)	46, 125, 876, 885
CviAII	CATG	9 cut(s)	290, 452, 567, 603, 667, 850, 881, 1076, 1136
CviQI	GTAC	4 cut(s)	46, 125, 876, 885
DdeI	CTNAG	3 cut(s)	412, 721, 1119
DpnI	GATC	6 cut(s)	5, 120, 201, 272, 749, 835
DpnII	GATC	6 cut(s)	3, 118, 199, 270, 747, 833
Eam1104I	CTCTTC	2 cut(s)	196, 1107
EarI	CTCTTC	2 cut(s)	196, 1107
Eco130I	CCWWGG	1 cut(s)	451
Eco47I	GGWCC	1 cut(s)	358
Eco81I	CCTNAGG	1 cut(s)	412
Eco88I	CYCGRG	1 cut(s)	920
EcoRII	CCWGG	2 cut(s)	29, 514
EcoT14I	CCWWGG	1 cut(s)	451
ErhI	CCWWGG	1 cut(s)	451
FaeI	CATG	9 cut(s)	293, 455, 570, 606, 670, 853, 884, 1079, 1139
FatI	CATG	9 cut(s)	289, 451, 566, 602, 666, 849, 880, 1075, 1135
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	1061
FokI	GGATG	3 cut(s)	26, 365, 866
Fsp4HI	GCNGC	1 cut(s)	1061
FspBI	CTAG	2 cut(s)	696, 1168
GluI	GCNGC	1 cut(s)	1061
GsaI	CCCAGC	1 cut(s)	849
GsuI	CTGGAG	1 cut(s)	424
HapII	CCGG	1 cut(s)	219
Hin1II	CATG	9 cut(s)	293, 455, 570, 606, 670, 853, 884, 1079, 1139
HincII	GTYRAC	1 cut(s)	727
HindII	GTYRAC	1 cut(s)	727
HinfI	GANTC	9 cut(s)	59, 188, 323, 395, 554, 662, 794, 1115, 1148
HpaII	CCGG	1 cut(s)	219
HphI	GGTGA	4 cut(s)	343, 722, 952, 959
Hpy166II	GTNNAC	4 cut(s)	46, 358, 727, 878
Hpy188I	TCNGA	8 cut(s)	247, 275, 328, 488, 742, 766, 907, 1153
Hpy188III	TCNNGA	4 cut(s)	203, 441, 1026, 1136
Hpy8I	GTNNAC	4 cut(s)	46, 358, 727, 878
HpyAV	CCTTC	6 cut(s)	343, 641, 642, 965, 1027, 1097
HpyCH4III	ACNGT	4 cut(s)	103, 133, 593, 976
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	6 cut(s)	161, 172, 402, 570, 705, 857
HpyF10VI	GCNNNNNNNGC	3 cut(s)	178, 431, 527
HpyF3I	CTNAG	3 cut(s)	412, 721, 1119
HpySE526I	ACGT	1 cut(s)	210
Hsp92II	CATG	9 cut(s)	293, 455, 570, 606, 670, 853, 884, 1079, 1139
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	6 cut(s)	3, 118, 199, 270, 747, 833
LmnI	GCTCC	1 cut(s)	443
Lsp1109I	GCAGC	1 cut(s)	1072
LweI	GCATC	1 cut(s)	844
MaeI	CTAG	2 cut(s)	696, 1168
MaeII	ACGT	1 cut(s)	210
MaeIII	GTNAC	3 cut(s)	185, 593, 605
MalI	GATC	6 cut(s)	5, 120, 201, 272, 749, 835
MboI	GATC	6 cut(s)	3, 118, 199, 270, 747, 833
MboII	GAAGA	7 cut(s)	92, 128, 183, 320, 599, 962, 1124
MfeI	CAATTG	3 cut(s)	418, 801, 858
MflI	RGATCY	1 cut(s)	833
MhlI	GDGCHC	1 cut(s)	440
MlyI	GAGTC	2 cut(s)	182, 1124
MmeI	TCCRAC	1 cut(s)	514
MnlI	CCTC	5 cut(s)	67, 88, 322, 421, 916
MroXI	GAANNNNTTC	3 cut(s)	894, 954, 1033
MseI	TTAA	5 cut(s)	105, 147, 315, 824, 840
MspI	CCGG	1 cut(s)	219
MspR9I	CCNGG	2 cut(s)	31, 516
MunI	CAATTG	3 cut(s)	418, 801, 858
MvaI	CCWGG	2 cut(s)	31, 516
MwoI	GCNNNNNNNGC	3 cut(s)	178, 431, 527
NcoI	CCATGG	1 cut(s)	451
NdeII	GATC	6 cut(s)	3, 118, 199, 270, 747, 833
NheI	GCTAGC	1 cut(s)	695
NlaIII	CATG	9 cut(s)	293, 455, 570, 606, 670, 853, 884, 1079, 1139
NmuCI	GTSAC	3 cut(s)	185, 593, 605
NspI	RCATGY	1 cut(s)	293
PaeR7I	CTCGAG	1 cut(s)	920
PagI	TCATGA	1 cut(s)	1135
PciI	ACATGT	1 cut(s)	289
PdmI	GAANNNNTTC	3 cut(s)	894, 954, 1033
PfeI	GAWTC	7 cut(s)	59, 323, 395, 554, 662, 794, 1148
PkrI	GCNGC	1 cut(s)	1062
PleI	GAGTC	2 cut(s)	182, 1123
PpsI	GAGTC	2 cut(s)	182, 1123
PscI	ACATGT	1 cut(s)	289
PshBI	ATTAAT	1 cut(s)	840
PsiI	TTATAA	1 cut(s)	626
Psp6I	CCWGG	2 cut(s)	29, 514
PspFI	CCCAGC	1 cut(s)	845
PspGI	CCWGG	2 cut(s)	29, 514
PspPI	GGNCC	1 cut(s)	358
PspXI	VCTCGAGB	1 cut(s)	920
PsuI	RGATCY	1 cut(s)	833
RsaI	GTAC	4 cut(s)	47, 126, 877, 886
RsaNI	GTAC	4 cut(s)	46, 125, 876, 885
SaqAI	TTAA	5 cut(s)	105, 147, 315, 824, 840
SatI	GCNGC	1 cut(s)	1061
Sau3AI	GATC	6 cut(s)	3, 118, 199, 270, 747, 833
Sau96I	GGNCC	1 cut(s)	358
SchI	GAGTC	2 cut(s)	182, 1124
ScrFI	CCNGG	2 cut(s)	31, 516
SduI	GDGCHC	1 cut(s)	440
SfaNI	GCATC	1 cut(s)	844
Sfr274I	CTCGAG	1 cut(s)	920
SinI	GGWCC	1 cut(s)	358
SlaI	CTCGAG	1 cut(s)	920
SmlI	CTYRAG	1 cut(s)	920
SmoI	CTYRAG	1 cut(s)	920
SspI	AATATT	1 cut(s)	871
SspMI	CTAG	2 cut(s)	696, 1168
StyD4I	CCNGG	2 cut(s)	29, 514
StyI	CCWWGG	1 cut(s)	451
TaaI	ACNGT	4 cut(s)	103, 133, 593, 976
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	3 cut(s)	202, 921, 1025
TfiI	GAWTC	7 cut(s)	59, 323, 395, 554, 662, 794, 1148
Tru1I	TTAA	5 cut(s)	105, 147, 315, 824, 840
Tru9I	TTAA	5 cut(s)	105, 147, 315, 824, 840
TscAI	CASTG	1 cut(s)	577
TseFI	GTSAC	3 cut(s)	185, 593, 605
TseI	GCWGC	1 cut(s)	1060
Tsp45I	GTSAC	3 cut(s)	185, 593, 605
TspDTI	ATGAA	7 cut(s)	183, 591, 600, 633, 786, 947, 956
TspGWI	ACGGA	1 cut(s)	902
TspRI	CASTG	1 cut(s)	577
VpaK11BI	GGWCC	1 cut(s)	358
VspI	ATTAAT	1 cut(s)	840
XapI	RAATTY	5 cut(s)	53, 107, 575, 1005, 1161
XceI	RCATGY	1 cut(s)	293
XhoI	CTCGAG	1 cut(s)	920
XmnI	GAANNNNTTC	3 cut(s)	894, 954, 1033
XspI	CTAG	2 cut(s)	696, 1168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.