Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004731

Physical Location & Seq

Genomic Coordinates Reverse (-)

41730583 .. 41732292

Gene Structure 1710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG324000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGATAACTATGGATGTCAAAGGTATAAACTGGGTTGGCTGTGTGTACGAGAAATTTGAATCTATGTGCTTGGAGGTGGAAGAAAATATGTACCAGGACACAGTTAAATTTGTTGAAGATCAGGTACAGACTGTTGGGGAGAGTGTTAAAAAGTTCTATGCAGATATAATGCAAGATTTGCTCTGTGACTCTTCATTGGATGGAGATAATATATCAGCTTGTGGTTTTCCTATTGAACATTATTCAGATGTTGATAATTCTAAGAAATCAAAGATTAGAAAAACGAAAGAACATGTAAGGGTTGGTGTTGAAGAAGTAAATGGGGATTCAGAGGTGATTTCTGTTGTGGAGAAGGATGTGGAACATACAGGATTGTTCCATAGACAGCGCGTGTATGATTCTTGCACAAGATCCTCAGGCGATTGTGCTAAAGTAGCATGCTCTGACTTGTACTCAAGACAAGACCATGGCATGAGAAGCTATATCAATAAAAATTTGGTTGTCAAACAAACTCCTATCAAGGACAGATTGCCAGGGGCAAATACTGCTGTTGGAAAAGATTTTAACAGAGTATCACTATCATGCAGCGAATTTTCAGATGAAAACCATGACGCTTCATGTGACCAACCAGATGAAGTTATAACTCCTACACTGGAAGGTATGAGATGTGATTCCATGAGGGAAAGATGTGTGGTTGCGAATGCTAGCCAATGTACAGATGATGTTTCAATTAACTGCCAATCATCTGATTTGATTGTTTTGGATAAATCCGATGGAAAAAGATGGAATGAACTGTTAGAGTCATCGATTGGTGGGTTATCAGCTGAATCAAATGGTGGATCTAATAACTCCAGTGTGCATGGAACAGAAATCAGTCAACAATCTGACAAGGCAAAGCTCGAGGAAACTTGTGTGATGGTCAGTGGTGAAGAACTTCATTTTGTTCATCACATGGTAGCCAACTGTAAGCCTTACAAGAAAAAAATTCCAAAAGCCTTCACTTCAAGAACGAGTTCAGCAAGGAAACAAGAATATGAGCAGCTTGCATTATGGCATGGGCATCATACAAAATCATTTTTAGGTGGAGAAGATTCAAAGAAATCCCCGACTCGTGATTTTTGCGAATCTGAATGGGAGATTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

381

Amino Acids

42.64

Weight (kDa)

5.16

Isoelectric Point (pI)

46.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130
fragaria_vesca	FvH4_6g27121 FvH4_6g27121
malus_domestica	MD09G1239700.v1.1 MD17G1232800.v1.1
prunus_persica	Prupe.3G122900_v2.0.a1
pyrus_communis	pycom09g15830 pycom17g23540 pycom17g23560
rosa_chinensis	RchiOBHm_Chr2g0128471 RchiOBHm_Chr2g0128481 RchiOBHm_Chr2g0129081
rosa_laevigata	RLG00000019053
rosa_multiflora	Rmu_ssc0000449.1_g000008
rosa_roxburghii	Rroxscaffold_2G00114890
rosa_rugosa	Rorug02G0284300.1 Rorug02G0284400 Rorug02G0284500
rosa_samantha	Rh2AG336700 Rh2BG344700 Rh2CG324000 Rh2DG361600 Rh3BG289900 Rh5AG278500
rosa_wichuraiana	Rw2G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	641
AccII	CGCG	1 cut(s)	390
AclWI	GGATC	2 cut(s)	405, 847
AcsI	RAATTY	5 cut(s)	53, 107, 493, 590, 984
AfaI	GTAC	5 cut(s)	47, 92, 126, 452, 715
AflIII	ACRYGT	1 cut(s)	292
AgsI	TTSAA	7 cut(s)	59, 116, 236, 311, 729, 1005, 1095
AjnI	CCWGG	2 cut(s)	93, 532
AluBI	AGCT	5 cut(s)	218, 480, 824, 898, 1042
AluI	AGCT	5 cut(s)	218, 480, 824, 898, 1042
AlwI	GGATC	2 cut(s)	405, 847
Ama87I	CYCGRG	1 cut(s)	899
ApeKI	GCWGC	2 cut(s)	585, 1039
ApoI	RAATTY	5 cut(s)	53, 107, 493, 590, 984
Asp700I	GAANNNNTTC	2 cut(s)	933, 1012
AspLEI	GCGC	1 cut(s)	390
AsuHPI	GGTGA	2 cut(s)	346, 938
AsuNHI	GCTAGC	1 cut(s)	704
AvaI	CYCGRG	1 cut(s)	899
AxyI	CCTNAGG	1 cut(s)	415
BarI	GAAGNNNNNNTAC	2 cut(s)	108, 140
BauI	CACGAG	1 cut(s)	1110
BbvI	GCAGC	2 cut(s)	597, 1051
BccI	CCATC	4 cut(s)	194, 767, 777, 910
BciT130I	CCWGG	2 cut(s)	95, 534
BfaI	CTAG	2 cut(s)	705, 1144
BisI	GCNGC	2 cut(s)	586, 1040
BlsI	GCNGC	2 cut(s)	587, 1041
Bme1390I	CCNGG	2 cut(s)	95, 534
BmeT110I	CYCGRG	1 cut(s)	899
BmrFI	CCNGG	2 cut(s)	95, 534
BmrI	ACTGGG	1 cut(s)	40
BmsI	GCATC	1 cut(s)	1069
BmtI	GCTAGC	1 cut(s)	708
BmuI	ACTGGG	1 cut(s)	40
BpmI	CTGGAG	1 cut(s)	835
BpuEI	CTTGAG	1 cut(s)	439
Bsa29I	ATCGAT	1 cut(s)	806
BsaJI	CCNNGG	2 cut(s)	466, 533
Bse1I	ACTGG	3 cut(s)	35, 657, 852
Bse21I	CCTNAGG	1 cut(s)	415
BseBI	CCWGG	2 cut(s)	95, 534
BseCI	ATCGAT	1 cut(s)	806
BseDI	CCNNGG	2 cut(s)	466, 533
BseGI	GGATG	3 cut(s)	19, 205, 361
BseMII	CTCAG	1 cut(s)	429
BseNI	ACTGG	3 cut(s)	35, 657, 852
BseXI	GCAGC	2 cut(s)	597, 1051
Bsh1236I	CGCG	1 cut(s)	390
BshVI	ATCGAT	1 cut(s)	806
BsiHKCI	CYCGRG	1 cut(s)	899
BsmI	GAATGC	1 cut(s)	706
BsoBI	CYCGRG	1 cut(s)	899
Bsp1407I	TGTACA	1 cut(s)	713
Bsp143I	GATC	3 cut(s)	118, 410, 839
Bsp19I	CCATGG	1 cut(s)	466
BspCNI	CTCAG	1 cut(s)	428
BspDI	ATCGAT	1 cut(s)	806
BspFNI	CGCG	1 cut(s)	390
BspOI	GCTAGC	1 cut(s)	708
BspPI	GGATC	2 cut(s)	405, 847
BsrGI	TGTACA	1 cut(s)	713
BsrI	ACTGG	3 cut(s)	35, 657, 852
BssECI	CCNNGG	2 cut(s)	466, 533
BssMI	GATC	3 cut(s)	118, 410, 839
BssSI	CACGAG	1 cut(s)	1110
BssT1I	CCWWGG	1 cut(s)	466
Bst2BI	CACGAG	1 cut(s)	1110
Bst2UI	CCWGG	2 cut(s)	95, 534
Bst4CI	ACNGT	4 cut(s)	103, 133, 795, 965
Bst6I	CTCTTC	1 cut(s)	196
BstAPI	GCANNNNNTGC	2 cut(s)	178, 545
BstAUI	TGTACA	1 cut(s)	713
BstC8I	GCNNGC	3 cut(s)	439, 706, 1044
BstDEI	CTNAG	2 cut(s)	261, 415
BstDSI	CCRYGG	1 cut(s)	466
BstF5I	GGATG	3 cut(s)	19, 205, 361
BstFNI	CGCG	1 cut(s)	390
BstHHI	GCGC	1 cut(s)	390
BstKTI	GATC	3 cut(s)	121, 413, 842
BstMBI	GATC	3 cut(s)	118, 410, 839
BstMWI	GCNNNNNNNGC	4 cut(s)	178, 434, 477, 545
BstNI	CCWGG	2 cut(s)	95, 534
BstNSI	RCATGY	2 cut(s)	296, 441
BstSCI	CCNGG	2 cut(s)	93, 532
BstUI	CGCG	1 cut(s)	390
BstV1I	GCAGC	2 cut(s)	597, 1051
BstX2I	RGATCY	2 cut(s)	410, 839
BstYI	RGATCY	2 cut(s)	410, 839
Bsu15I	ATCGAT	1 cut(s)	806
Bsu36I	CCTNAGG	1 cut(s)	415
BsuTUI	ATCGAT	1 cut(s)	806
BtgI	CCRYGG	1 cut(s)	466
BtsCI	GGATG	3 cut(s)	19, 205, 361
BtsIMutI	CAGTG	3 cut(s)	650, 859, 928
Cac8I	GCNNGC	3 cut(s)	439, 706, 1044
CfoI	GCGC	1 cut(s)	390
ClaI	ATCGAT	1 cut(s)	806
CseI	GACGC	1 cut(s)	620
Csp6I	GTAC	5 cut(s)	46, 91, 125, 451, 714
CviQI	GTAC	5 cut(s)	46, 91, 125, 451, 714
DdeI	CTNAG	2 cut(s)	261, 415
DpnI	GATC	3 cut(s)	120, 412, 841
DpnII	GATC	3 cut(s)	118, 410, 839
Eam1104I	CTCTTC	1 cut(s)	196
EarI	CTCTTC	1 cut(s)	196
Eco130I	CCWWGG	1 cut(s)	466
Eco81I	CCTNAGG	1 cut(s)	415
Eco88I	CYCGRG	1 cut(s)	899
EcoRII	CCWGG	2 cut(s)	93, 532
EcoT14I	CCWWGG	1 cut(s)	466
ErhI	CCWWGG	1 cut(s)	466
Fnu4HI	GCNGC	2 cut(s)	586, 1040
FokI	GGATG	3 cut(s)	26, 212, 368
Fsp4HI	GCNGC	2 cut(s)	586, 1040
FspBI	CTAG	2 cut(s)	705, 1144
GlaI	GCGC	1 cut(s)	389
GluI	GCNGC	2 cut(s)	586, 1040
GsuI	CTGGAG	1 cut(s)	835
HgaI	GACGC	1 cut(s)	620
HhaI	GCGC	1 cut(s)	390
Hin6I	GCGC	1 cut(s)	388
HinP1I	GCGC	1 cut(s)	388
HincII	GTYRAC	1 cut(s)	878
HindII	GTYRAC	1 cut(s)	878
HphI	GGTGA	2 cut(s)	346, 938
Hpy166II	GTNNAC	2 cut(s)	46, 878
Hpy188I	TCNGA	8 cut(s)	247, 331, 445, 598, 748, 772, 886, 1129
Hpy188III	TCNNGA	3 cut(s)	456, 1005, 1112
Hpy8I	GTNNAC	2 cut(s)	46, 878
HpyAV	CCTTC	3 cut(s)	346, 650, 1006
HpyCH4III	ACNGT	4 cut(s)	103, 133, 795, 965
HpyCH4V	TGCA	6 cut(s)	161, 172, 405, 585, 859, 1046
HpyF10VI	GCNNNNNNNGC	4 cut(s)	178, 434, 477, 545
HpyF3I	CTNAG	2 cut(s)	261, 415
HspAI	GCGC	1 cut(s)	388
Kzo9I	GATC	3 cut(s)	118, 410, 839
Lsp1109I	GCAGC	2 cut(s)	597, 1051
LweI	GCATC	1 cut(s)	1069
MaeI	CTAG	2 cut(s)	705, 1144
MaeIII	GTNAC	2 cut(s)	185, 620
MalI	GATC	3 cut(s)	120, 412, 841
MboI	GATC	3 cut(s)	118, 410, 839
MboII	GAAGA	6 cut(s)	92, 128, 183, 323, 941, 1100
MflI	RGATCY	2 cut(s)	410, 839
MluCI	AATT	7 cut(s)	53, 107, 256, 493, 590, 729, 984
MlyI	GAGTC	3 cut(s)	182, 809, 1102
MmeI	TCCRAC	1 cut(s)	532
MnlI	CCTC	5 cut(s)	67, 325, 424, 672, 895
MroXI	GAANNNNTTC	2 cut(s)	933, 1012
MseI	TTAA	4 cut(s)	105, 147, 564, 732
MslI	CAYNNNNRTG	1 cut(s)	580
MspA1I	CMGCKG	1 cut(s)	824
MspR9I	CCNGG	2 cut(s)	95, 534
Mva1269I	GAATGC	1 cut(s)	706
MvaI	CCWGG	2 cut(s)	95, 534
MvnI	CGCG	1 cut(s)	390
MwoI	GCNNNNNNNGC	4 cut(s)	178, 434, 477, 545
NcoI	CCATGG	1 cut(s)	466
NdeII	GATC	3 cut(s)	118, 410, 839
NheI	GCTAGC	1 cut(s)	704
NmuCI	GTSAC	2 cut(s)	185, 620
NspI	RCATGY	2 cut(s)	296, 441
PaeI	GCATGC	1 cut(s)	441
PaeR7I	CTCGAG	1 cut(s)	899
PciI	ACATGT	1 cut(s)	292
PctI	GAATGC	1 cut(s)	706
PdmI	GAANNNNTTC	2 cut(s)	933, 1012
PfeI	GAWTC	8 cut(s)	59, 326, 398, 671, 827, 1091, 1124, 1138
PkrI	GCNGC	2 cut(s)	587, 1041
PleI	GAGTC	3 cut(s)	182, 808, 1102
PpsI	GAGTC	3 cut(s)	182, 808, 1102
PscI	ACATGT	1 cut(s)	292
PsiI	TTATAA	1 cut(s)	641
Psp6I	CCWGG	2 cut(s)	93, 532
PspGI	CCWGG	2 cut(s)	93, 532
PspXI	VCTCGAGB	1 cut(s)	899
PsuI	RGATCY	2 cut(s)	410, 839
PvuII	CAGCTG	1 cut(s)	824
RsaI	GTAC	5 cut(s)	47, 92, 126, 452, 715
RsaNI	GTAC	5 cut(s)	46, 91, 125, 451, 714
RseI	CAYNNNNRTG	1 cut(s)	580
SaqAI	TTAA	4 cut(s)	105, 147, 564, 732
SatI	GCNGC	2 cut(s)	586, 1040
Sau3AI	GATC	3 cut(s)	118, 410, 839
SchI	GAGTC	3 cut(s)	182, 809, 1102
ScrFI	CCNGG	2 cut(s)	95, 534
SfaNI	GCATC	1 cut(s)	1069
Sfr274I	CTCGAG	1 cut(s)	899
SlaI	CTCGAG	1 cut(s)	899
SmiMI	CAYNNNNRTG	1 cut(s)	580
SmlI	CTYRAG	2 cut(s)	454, 899
SmoI	CTYRAG	2 cut(s)	454, 899
SphI	GCATGC	1 cut(s)	441
Sse9I	AATT	7 cut(s)	53, 107, 256, 493, 590, 729, 984
SspMI	CTAG	2 cut(s)	705, 1144
StyD4I	CCNGG	2 cut(s)	93, 532
StyI	CCWWGG	1 cut(s)	466
TaaI	ACNGT	4 cut(s)	103, 133, 795, 965
TaqI	TCGA	2 cut(s)	806, 900
TasI	AATT	7 cut(s)	53, 107, 256, 493, 590, 729, 984
TatI	WGTACW	2 cut(s)	450, 713
TfiI	GAWTC	8 cut(s)	59, 326, 398, 671, 827, 1091, 1124, 1138
Tru1I	TTAA	4 cut(s)	105, 147, 564, 732
Tru9I	TTAA	4 cut(s)	105, 147, 564, 732
TscAI	CASTG	3 cut(s)	657, 859, 928
TseFI	GTSAC	2 cut(s)	185, 620
TseI	GCWGC	2 cut(s)	585, 1039
Tsp45I	GTSAC	2 cut(s)	185, 620
TspDTI	ATGAA	7 cut(s)	183, 606, 615, 648, 804, 926, 935
TspRI	CASTG	3 cut(s)	657, 859, 928
XapI	RAATTY	5 cut(s)	53, 107, 493, 590, 984
XceI	RCATGY	2 cut(s)	296, 441
XhoI	CTCGAG	1 cut(s)	899
XmnI	GAANNNNTTC	2 cut(s)	933, 1012
XspI	CTAG	2 cut(s)	705, 1144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.