Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004731

Physical Location & Seq

Genomic Coordinates Reverse (-)

43568046 .. 43569052

Gene Structure 1007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50025

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGACAACTATGGATGTCAAAGGTATAAACTGGGTTGGGTGTGTGTACGAGAAATTTGAATCTATGTGCTTGGAGGTGGAAGAAAATATGTACCAGGACACAGTTAAATTTGTTGAAGATCAGGTACAGACTGTTGGGGAGAGTGTTAAAAAGTTCTATGCAGATATAATGCAAGATTTGCTCTGTGACTCTTCATTGGATGGAGATAATATATCAGCTTGTGGTTTTCCTATTGAACATTATTCAGATGTTGATAATTCTAAGAAATCAAAGATTAGAAAAACGAAAGAACATGTAAAGGTTGGTGTTGAAGAAGTAAATGGGGATTCAGAGGTGATTTCTGTTGTGGAGAAGAATGTGGAACATACAGGATTGTTTCATAGACAGCGCGTGTATGATTCTTGCACAAGATCCTCAGGTGATTGTGCTAAAGTAGCATGCTCTGACTTGTACTCAAGACAAGACCATGGCATGAGAAGCTATATCAATAAAATTTGGTTGTCAAACAAACTCCTATCAAGGACAGATTGCCAGGGGCAAATACTGCTGTTGGAAAAGATTTTAACAGAGTATCACTATCATGCAGCGAATTTTCAAATGAAAACCATGACGCTTCATGTGACCAACCAGATGAAGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

213

Amino Acids

24.42

Weight (kDa)

5.62

Isoelectric Point (pI)

44.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130
fragaria_vesca	FvH4_6g27121 FvH4_6g27121
malus_domestica	MD09G1239700.v1.1 MD17G1232800.v1.1
prunus_persica	Prupe.3G122900_v2.0.a1
pyrus_communis	pycom09g15830 pycom17g23540 pycom17g23560
rosa_chinensis	RchiOBHm_Chr2g0128471 RchiOBHm_Chr2g0128481 RchiOBHm_Chr2g0129081
rosa_laevigata	RLG00000019053
rosa_multiflora	Rmu_ssc0000449.1_g000008
rosa_roxburghii	Rroxscaffold_2G00114890
rosa_rugosa	Rorug02G0284300.1 Rorug02G0284400 Rorug02G0284500
rosa_samantha	Rh2AG336700 Rh2BG344700 Rh2CG324000 Rh2DG361600 Rh3BG289900 Rh5AG278500
rosa_wichuraiana	Rw2G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	640
AccII	CGCG	1 cut(s)	390
AclWI	GGATC	1 cut(s)	405
AcsI	RAATTY	4 cut(s)	53, 107, 492, 589
AfaI	GTAC	4 cut(s)	47, 92, 126, 452
AflIII	ACRYGT	1 cut(s)	292
AgsI	TTSAA	5 cut(s)	59, 116, 236, 311, 596
AjnI	CCWGG	2 cut(s)	93, 531
AluBI	AGCT	2 cut(s)	218, 480
AluI	AGCT	2 cut(s)	218, 480
AlwI	GGATC	1 cut(s)	405
ApeKI	GCWGC	1 cut(s)	584
ApoI	RAATTY	4 cut(s)	53, 107, 492, 589
AspLEI	GCGC	1 cut(s)	390
AsuHPI	GGTGA	2 cut(s)	346, 431
AxyI	CCTNAGG	1 cut(s)	415
BarI	GAAGNNNNNNTAC	2 cut(s)	108, 140
BbvI	GCAGC	1 cut(s)	596
BccI	CCATC	1 cut(s)	194
BciT130I	CCWGG	2 cut(s)	95, 533
BisI	GCNGC	1 cut(s)	585
BlsI	GCNGC	1 cut(s)	586
Bme1390I	CCNGG	2 cut(s)	95, 533
BmrFI	CCNGG	2 cut(s)	95, 533
BmrI	ACTGGG	1 cut(s)	40
BmuI	ACTGGG	1 cut(s)	40
BpuEI	CTTGAG	1 cut(s)	439
BsaJI	CCNNGG	2 cut(s)	466, 532
Bse1I	ACTGG	1 cut(s)	35
Bse21I	CCTNAGG	1 cut(s)	415
BseBI	CCWGG	2 cut(s)	95, 533
BseDI	CCNNGG	2 cut(s)	466, 532
BseGI	GGATG	2 cut(s)	19, 205
BseMII	CTCAG	1 cut(s)	429
BseNI	ACTGG	1 cut(s)	35
BseXI	GCAGC	1 cut(s)	596
Bsh1236I	CGCG	1 cut(s)	390
Bsp143I	GATC	2 cut(s)	118, 410
Bsp19I	CCATGG	1 cut(s)	466
BspCNI	CTCAG	1 cut(s)	428
BspFNI	CGCG	1 cut(s)	390
BspPI	GGATC	1 cut(s)	405
BsrI	ACTGG	1 cut(s)	35
BssECI	CCNNGG	2 cut(s)	466, 532
BssMI	GATC	2 cut(s)	118, 410
BssT1I	CCWWGG	1 cut(s)	466
Bst2UI	CCWGG	2 cut(s)	95, 533
Bst4CI	ACNGT	2 cut(s)	103, 133
Bst6I	CTCTTC	1 cut(s)	196
BstAPI	GCANNNNNTGC	2 cut(s)	178, 544
BstC8I	GCNNGC	1 cut(s)	439
BstDEI	CTNAG	2 cut(s)	261, 415
BstDSI	CCRYGG	1 cut(s)	466
BstF5I	GGATG	2 cut(s)	19, 205
BstFNI	CGCG	1 cut(s)	390
BstHHI	GCGC	1 cut(s)	390
BstKTI	GATC	2 cut(s)	121, 413
BstMBI	GATC	2 cut(s)	118, 410
BstMWI	GCNNNNNNNGC	4 cut(s)	178, 434, 477, 544
BstNI	CCWGG	2 cut(s)	95, 533
BstNSI	RCATGY	2 cut(s)	296, 441
BstSCI	CCNGG	2 cut(s)	93, 531
BstUI	CGCG	1 cut(s)	390
BstV1I	GCAGC	1 cut(s)	596
BstX2I	RGATCY	1 cut(s)	410
BstYI	RGATCY	1 cut(s)	410
Bsu36I	CCTNAGG	1 cut(s)	415
BtgI	CCRYGG	1 cut(s)	466
BtsCI	GGATG	2 cut(s)	19, 205
Cac8I	GCNNGC	1 cut(s)	439
CfoI	GCGC	1 cut(s)	390
CseI	GACGC	1 cut(s)	619
Csp6I	GTAC	4 cut(s)	46, 91, 125, 451
CviAII	CATG	7 cut(s)	293, 438, 467, 472, 581, 607, 617
CviJI	RGCY	2 cut(s)	218, 480
CviKI_1	RGCY	2 cut(s)	218, 480
CviQI	GTAC	4 cut(s)	46, 91, 125, 451
DdeI	CTNAG	2 cut(s)	261, 415
DpnI	GATC	2 cut(s)	120, 412
DpnII	GATC	2 cut(s)	118, 410
Eam1104I	CTCTTC	1 cut(s)	196
EarI	CTCTTC	1 cut(s)	196
Eco130I	CCWWGG	1 cut(s)	466
Eco81I	CCTNAGG	1 cut(s)	415
EcoRII	CCWGG	2 cut(s)	93, 531
EcoT14I	CCWWGG	1 cut(s)	466
ErhI	CCWWGG	1 cut(s)	466
FaeI	CATG	7 cut(s)	296, 441, 470, 475, 584, 610, 620
FatI	CATG	7 cut(s)	292, 437, 466, 471, 580, 606, 616
Fnu4HI	GCNGC	1 cut(s)	585
FokI	GGATG	2 cut(s)	26, 212
Fsp4HI	GCNGC	1 cut(s)	585
GlaI	GCGC	1 cut(s)	389
GluI	GCNGC	1 cut(s)	585
HgaI	GACGC	1 cut(s)	619
HhaI	GCGC	1 cut(s)	390
Hin1II	CATG	7 cut(s)	296, 441, 470, 475, 584, 610, 620
Hin6I	GCGC	1 cut(s)	388
HinP1I	GCGC	1 cut(s)	388
HinfI	GANTC	4 cut(s)	59, 188, 326, 398
HphI	GGTGA	2 cut(s)	346, 431
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	3 cut(s)	247, 331, 445
Hpy188III	TCNNGA	1 cut(s)	456
Hpy8I	GTNNAC	1 cut(s)	46
HpyCH4III	ACNGT	2 cut(s)	103, 133
HpyCH4V	TGCA	4 cut(s)	161, 172, 405, 584
HpyF10VI	GCNNNNNNNGC	4 cut(s)	178, 434, 477, 544
HpyF3I	CTNAG	2 cut(s)	261, 415
Hsp92II	CATG	7 cut(s)	296, 441, 470, 475, 584, 610, 620
HspAI	GCGC	1 cut(s)	388
Kzo9I	GATC	2 cut(s)	118, 410
LpnPI	CCDG	8 cut(s)	16, 80, 107, 107, 354, 402, 518, 545
Lsp1109I	GCAGC	1 cut(s)	596
MaeIII	GTNAC	2 cut(s)	185, 619
MalI	GATC	2 cut(s)	120, 412
MboI	GATC	2 cut(s)	118, 410
MboII	GAAGA	5 cut(s)	92, 128, 183, 323, 364
MflI	RGATCY	1 cut(s)	410
MluCI	AATT	5 cut(s)	53, 107, 256, 492, 589
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	1 cut(s)	531
MnlI	CCTC	3 cut(s)	67, 325, 424
MseI	TTAA	3 cut(s)	105, 147, 563
MslI	CAYNNNNRTG	1 cut(s)	579
MspR9I	CCNGG	2 cut(s)	95, 533
MvaI	CCWGG	2 cut(s)	95, 533
MvnI	CGCG	1 cut(s)	390
MwoI	GCNNNNNNNGC	4 cut(s)	178, 434, 477, 544
NcoI	CCATGG	1 cut(s)	466
NdeII	GATC	2 cut(s)	118, 410
NlaIII	CATG	7 cut(s)	296, 441, 470, 475, 584, 610, 620
NmuCI	GTSAC	2 cut(s)	185, 619
NspI	RCATGY	2 cut(s)	296, 441
PaeI	GCATGC	1 cut(s)	441
PciI	ACATGT	1 cut(s)	292
PfeI	GAWTC	3 cut(s)	59, 326, 398
PkrI	GCNGC	1 cut(s)	586
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
PscI	ACATGT	1 cut(s)	292
PsiI	TTATAA	1 cut(s)	640
Psp6I	CCWGG	2 cut(s)	93, 531
PspGI	CCWGG	2 cut(s)	93, 531
PsuI	RGATCY	1 cut(s)	410
RsaI	GTAC	4 cut(s)	47, 92, 126, 452
RsaNI	GTAC	4 cut(s)	46, 91, 125, 451
RseI	CAYNNNNRTG	1 cut(s)	579
SaqAI	TTAA	3 cut(s)	105, 147, 563
SatI	GCNGC	1 cut(s)	585
Sau3AI	GATC	2 cut(s)	118, 410
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	2 cut(s)	95, 533
SetI	ASST	8 cut(s)	25, 78, 126, 220, 303, 336, 421, 482
SmiMI	CAYNNNNRTG	1 cut(s)	579
SmlI	CTYRAG	1 cut(s)	454
SmoI	CTYRAG	1 cut(s)	454
SphI	GCATGC	1 cut(s)	441
Sse9I	AATT	5 cut(s)	53, 107, 256, 492, 589
StyD4I	CCNGG	2 cut(s)	93, 531
StyI	CCWWGG	1 cut(s)	466
TaaI	ACNGT	2 cut(s)	103, 133
TasI	AATT	5 cut(s)	53, 107, 256, 492, 589
TatI	WGTACW	1 cut(s)	450
TfiI	GAWTC	3 cut(s)	59, 326, 398
Tru1I	TTAA	3 cut(s)	105, 147, 563
Tru9I	TTAA	3 cut(s)	105, 147, 563
TseFI	GTSAC	2 cut(s)	185, 619
TseI	GCWGC	1 cut(s)	584
Tsp45I	GTSAC	2 cut(s)	185, 619
TspDTI	ATGAA	4 cut(s)	183, 368, 605, 614
XapI	RAATTY	4 cut(s)	53, 107, 492, 589
XceI	RCATGY	2 cut(s)	296, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.