Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004731

Physical Location & Seq

Genomic Coordinates Forward (+)

40981038 .. 40986482

Gene Structure 5445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00114890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGATAACCATGGATGTCAAAGGTATAAACTGGGTTGGGTGTGTGTACGAGAAATTTGAATCTATGTGCTTGGAGGTTGAAGAAAATATGTACCAGGACACAGTTAAATTTGTTGAAGATCAGGTACAGACTGTTGGGGAGAGTGTTAAAAAGTTCTATGCAGATATGATGCAAGATTTGCTCTGTGACTCTTCATTGGATGGAGAGAATATATCAGCTTGTGGTTTTCCTATTGAACATTATTCAGATGTTGATAATTCTAAGAAATCAAAGGTTAGAAAAATGAAAGAACATGTAAAGGTTGGTGTTGAAGAAGTAAATGGGGATTCAGAGGTGATTTCTGTTGTGGAGAACGATGTGGAACATACAGGATTGTTCCATAGACAGCGCGTGTATGATTCTTGCACAAGATCCTCAGGCGATTGTGCTAAAGTAGCATGCTCTGACTTTTACTCAAGACAAGACCATGGCATGAGAAGCTATAACAAAAAAAATTTGGTTGTCAAACAAACTCCTATCAAGGACAGATTGCCAGGGGCAAATACTGCTGTTGGAAAAGATTTTAACAGAGTATCACTATCATGCAGTGAATTTTCAAATGAAAACCGTGACGCTTCATGTGACCTACCAGATGAAGTTATAACTCCTACGGCGGAAGGTATGAGATGTGATTCCATGAGGGAAAGTTGTGTGGTTGCAAATGCTAGCCAATGTACAGATGATGTTTCAATTAACTGCCAATCAGCTGATTTGATTGTTTTGGATAAATCGGATGGAAAAAGATGGAATGAACTGTTAGAGTCATCGATTGGTGGGTTATCAGCTGAATCAAATGGTGGATCTAATAACTCCAGTGTGCATGCAATTGATAGCAATATTGGTGTGCATGGAACGGAAATCAGTCAACAATCTGACAAGGCAAAGCTCGAGGAAACTTGTGTGATGGTCAGTGGTGAAGAACTTCATTTTGTTCATCACATGGTAGCCAACTGTAAGCCTTACAAGAAAAAATTCCAAAAGCTTTCACTTCAAGAACGAGTTCAGCAAGGAAACAAGAGTATGAGCAGCTTGCATTATGGCATGGGCATCATACAAAATCATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

368

Amino Acids

40.93

Weight (kDa)

5.17

Isoelectric Point (pI)

48.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130
fragaria_vesca	FvH4_6g27121 FvH4_6g27121
malus_domestica	MD09G1239700.v1.1 MD17G1232800.v1.1
prunus_persica	Prupe.3G122900_v2.0.a1
pyrus_communis	pycom09g15830 pycom17g23540 pycom17g23560
rosa_chinensis	RchiOBHm_Chr2g0128471 RchiOBHm_Chr2g0128481 RchiOBHm_Chr2g0129081
rosa_laevigata	RLG00000019053
rosa_multiflora	Rmu_ssc0000449.1_g000008
rosa_roxburghii	Rroxscaffold_2G00114890
rosa_rugosa	Rorug02G0284300.1 Rorug02G0284400 Rorug02G0284500
rosa_samantha	Rh2AG336700 Rh2BG344700 Rh2CG324000 Rh2DG361600 Rh3BG289900 Rh5AG278500
rosa_wichuraiana	Rw2G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	641
AccII	CGCG	1 cut(s)	390
AciI	CCGC	1 cut(s)	653
AclWI	GGATC	2 cut(s)	405, 847
AcsI	RAATTY	5 cut(s)	53, 107, 493, 590, 1010
AfaI	GTAC	4 cut(s)	47, 92, 126, 715
AflIII	ACRYGT	1 cut(s)	292
AgsI	TTSAA	8 cut(s)	59, 80, 116, 236, 311, 597, 729, 1031
AjnI	CCWGG	2 cut(s)	93, 532
AluBI	AGCT	7 cut(s)	218, 480, 746, 824, 925, 1021, 1068
AluI	AGCT	7 cut(s)	218, 480, 746, 824, 925, 1021, 1068
AlwI	GGATC	2 cut(s)	405, 847
Ama87I	CYCGRG	1 cut(s)	926
ApeKI	GCWGC	1 cut(s)	1065
ApoI	RAATTY	5 cut(s)	53, 107, 493, 590, 1010
Asp700I	GAANNNNTTC	3 cut(s)	960, 1010, 1038
AspLEI	GCGC	1 cut(s)	390
AsuHPI	GGTGA	2 cut(s)	346, 965
AsuNHI	GCTAGC	1 cut(s)	704
AvaI	CYCGRG	1 cut(s)	926
AxyI	CCTNAGG	1 cut(s)	415
BarI	GAAGNNNNNNTAC	2 cut(s)	108, 140
BbvI	GCAGC	1 cut(s)	1077
BccI	CCATC	4 cut(s)	194, 767, 777, 937
BceAI	ACGGC	1 cut(s)	666
BciT130I	CCWGG	2 cut(s)	95, 534
BfaI	CTAG	1 cut(s)	705
BisI	GCNGC	1 cut(s)	1066
BlsI	GCNGC	1 cut(s)	1067
Bme1390I	CCNGG	2 cut(s)	95, 534
BmeT110I	CYCGRG	1 cut(s)	926
BmrFI	CCNGG	2 cut(s)	95, 534
BmrI	ACTGGG	1 cut(s)	40
BmsI	GCATC	2 cut(s)	159, 1095
BmtI	GCTAGC	1 cut(s)	708
BmuI	ACTGGG	1 cut(s)	40
BpmI	CTGGAG	1 cut(s)	835
BpuEI	CTTGAG	1 cut(s)	439
Bsa29I	ATCGAT	1 cut(s)	806
BsaJI	CCNNGG	3 cut(s)	9, 466, 533
Bse1I	ACTGG	2 cut(s)	35, 852
Bse21I	CCTNAGG	1 cut(s)	415
BseBI	CCWGG	2 cut(s)	95, 534
BseCI	ATCGAT	1 cut(s)	806
BseDI	CCNNGG	3 cut(s)	9, 466, 533
BseGI	GGATG	3 cut(s)	19, 205, 778
BseMII	CTCAG	1 cut(s)	429
BseNI	ACTGG	2 cut(s)	35, 852
BseXI	GCAGC	1 cut(s)	1077
Bsh1236I	CGCG	1 cut(s)	390
BshVI	ATCGAT	1 cut(s)	806
BsiHKCI	CYCGRG	1 cut(s)	926
BsoBI	CYCGRG	1 cut(s)	926
Bsp1407I	TGTACA	1 cut(s)	713
Bsp143I	GATC	3 cut(s)	118, 410, 839
Bsp19I	CCATGG	2 cut(s)	9, 466
BspACI	CCGC	1 cut(s)	653
BspCNI	CTCAG	1 cut(s)	428
BspDI	ATCGAT	1 cut(s)	806
BspFNI	CGCG	1 cut(s)	390
BspOI	GCTAGC	1 cut(s)	708
BspPI	GGATC	2 cut(s)	405, 847
BsrGI	TGTACA	1 cut(s)	713
BsrI	ACTGG	2 cut(s)	35, 852
BssECI	CCNNGG	3 cut(s)	9, 466, 533
BssMI	GATC	3 cut(s)	118, 410, 839
BssT1I	CCWWGG	2 cut(s)	9, 466
Bst2UI	CCWGG	2 cut(s)	95, 534
Bst4CI	ACNGT	5 cut(s)	103, 133, 608, 795, 992
Bst6I	CTCTTC	1 cut(s)	196
BstAPI	GCANNNNNTGC	2 cut(s)	178, 545
BstAUI	TGTACA	1 cut(s)	713
BstC8I	GCNNGC	4 cut(s)	439, 706, 861, 1070
BstDEI	CTNAG	2 cut(s)	261, 415
BstDSI	CCRYGG	2 cut(s)	9, 466
BstF5I	GGATG	3 cut(s)	19, 205, 778
BstFNI	CGCG	1 cut(s)	390
BstHHI	GCGC	1 cut(s)	390
BstKTI	GATC	3 cut(s)	121, 413, 842
BstMBI	GATC	3 cut(s)	118, 410, 839
BstMWI	GCNNNNNNNGC	4 cut(s)	178, 434, 477, 545
BstNI	CCWGG	2 cut(s)	95, 534
BstNSI	RCATGY	3 cut(s)	296, 441, 863
BstSCI	CCNGG	2 cut(s)	93, 532
BstUI	CGCG	1 cut(s)	390
BstV1I	GCAGC	1 cut(s)	1077
BstX2I	RGATCY	2 cut(s)	410, 839
BstYI	RGATCY	2 cut(s)	410, 839
Bsu15I	ATCGAT	1 cut(s)	806
Bsu36I	CCTNAGG	1 cut(s)	415
BsuTUI	ATCGAT	1 cut(s)	806
BtgI	CCRYGG	2 cut(s)	9, 466
BtsCI	GGATG	3 cut(s)	19, 205, 778
BtsI	GCAGTG	1 cut(s)	592
BtsIMutI	CAGTG	3 cut(s)	592, 859, 955
Cac8I	GCNNGC	4 cut(s)	439, 706, 861, 1070
CfoI	GCGC	1 cut(s)	390
ClaI	ATCGAT	1 cut(s)	806
CseI	GACGC	1 cut(s)	620
Csp6I	GTAC	4 cut(s)	46, 91, 125, 714
CviQI	GTAC	4 cut(s)	46, 91, 125, 714
DdeI	CTNAG	2 cut(s)	261, 415
DpnI	GATC	3 cut(s)	120, 412, 841
DpnII	GATC	3 cut(s)	118, 410, 839
Eam1104I	CTCTTC	1 cut(s)	196
EarI	CTCTTC	1 cut(s)	196
EciI	GGCGGA	1 cut(s)	668
Eco130I	CCWWGG	2 cut(s)	9, 466
Eco81I	CCTNAGG	1 cut(s)	415
Eco88I	CYCGRG	1 cut(s)	926
EcoRII	CCWGG	2 cut(s)	93, 532
EcoT14I	CCWWGG	2 cut(s)	9, 466
ErhI	CCWWGG	2 cut(s)	9, 466
Fnu4HI	GCNGC	1 cut(s)	1066
FokI	GGATG	3 cut(s)	26, 212, 785
Fsp4HI	GCNGC	1 cut(s)	1066
FspBI	CTAG	1 cut(s)	705
GlaI	GCGC	1 cut(s)	389
GluI	GCNGC	1 cut(s)	1066
GsuI	CTGGAG	1 cut(s)	835
HgaI	GACGC	1 cut(s)	620
HhaI	GCGC	1 cut(s)	390
Hin6I	GCGC	1 cut(s)	388
HinP1I	GCGC	1 cut(s)	388
HincII	GTYRAC	1 cut(s)	905
HindII	GTYRAC	1 cut(s)	905
HindIII	AAGCTT	1 cut(s)	1019
HinfI	GANTC	7 cut(s)	59, 188, 326, 398, 671, 800, 827
HphI	GGTGA	2 cut(s)	346, 965
Hpy166II	GTNNAC	2 cut(s)	46, 905
Hpy188I	TCNGA	5 cut(s)	247, 331, 445, 772, 913
Hpy188III	TCNNGA	2 cut(s)	456, 1031
Hpy8I	GTNNAC	2 cut(s)	46, 905
HpyAV	CCTTC	1 cut(s)	650
HpyCH4III	ACNGT	5 cut(s)	103, 133, 608, 795, 992
HpyCH4V	TGCA	9 cut(s)	161, 172, 405, 585, 698, 859, 863, 886, 1072
HpyF10VI	GCNNNNNNNGC	4 cut(s)	178, 434, 477, 545
HpyF3I	CTNAG	2 cut(s)	261, 415
HspAI	GCGC	1 cut(s)	388
Kzo9I	GATC	3 cut(s)	118, 410, 839
Lsp1109I	GCAGC	1 cut(s)	1077
LweI	GCATC	2 cut(s)	159, 1095
MaeI	CTAG	1 cut(s)	705
MaeIII	GTNAC	3 cut(s)	185, 608, 620
MalI	GATC	3 cut(s)	120, 412, 841
MboI	GATC	3 cut(s)	118, 410, 839
MboII	GAAGA	5 cut(s)	92, 128, 183, 323, 968
MfeI	CAATTG	1 cut(s)	864
MflI	RGATCY	2 cut(s)	410, 839
MluCI	AATT	8 cut(s)	53, 107, 256, 493, 590, 729, 864, 1010
MlyI	GAGTC	2 cut(s)	182, 809
MmeI	TCCRAC	1 cut(s)	532
MnlI	CCTC	5 cut(s)	67, 325, 424, 672, 922
MroXI	GAANNNNTTC	3 cut(s)	960, 1010, 1038
MseI	TTAA	4 cut(s)	105, 147, 564, 732
MslI	CAYNNNNRTG	1 cut(s)	580
MspA1I	CMGCKG	2 cut(s)	746, 824
MspR9I	CCNGG	2 cut(s)	95, 534
MunI	CAATTG	1 cut(s)	864
MvaI	CCWGG	2 cut(s)	95, 534
MvnI	CGCG	1 cut(s)	390
MwoI	GCNNNNNNNGC	4 cut(s)	178, 434, 477, 545
NcoI	CCATGG	2 cut(s)	9, 466
NdeII	GATC	3 cut(s)	118, 410, 839
NheI	GCTAGC	1 cut(s)	704
NmuCI	GTSAC	3 cut(s)	185, 608, 620
NspI	RCATGY	3 cut(s)	296, 441, 863
PaeI	GCATGC	2 cut(s)	441, 863
PaeR7I	CTCGAG	1 cut(s)	926
PciI	ACATGT	1 cut(s)	292
PdmI	GAANNNNTTC	3 cut(s)	960, 1010, 1038
PfeI	GAWTC	5 cut(s)	59, 326, 398, 671, 827
PkrI	GCNGC	1 cut(s)	1067
PleI	GAGTC	2 cut(s)	182, 808
PpsI	GAGTC	2 cut(s)	182, 808
PscI	ACATGT	1 cut(s)	292
PsiI	TTATAA	1 cut(s)	641
Psp6I	CCWGG	2 cut(s)	93, 532
PspGI	CCWGG	2 cut(s)	93, 532
PspXI	VCTCGAGB	1 cut(s)	926
PsuI	RGATCY	2 cut(s)	410, 839
PvuII	CAGCTG	2 cut(s)	746, 824
RsaI	GTAC	4 cut(s)	47, 92, 126, 715
RsaNI	GTAC	4 cut(s)	46, 91, 125, 714
RseI	CAYNNNNRTG	1 cut(s)	580
SaqAI	TTAA	4 cut(s)	105, 147, 564, 732
SatI	GCNGC	1 cut(s)	1066
Sau3AI	GATC	3 cut(s)	118, 410, 839
SchI	GAGTC	2 cut(s)	182, 809
ScrFI	CCNGG	2 cut(s)	95, 534
SfaNI	GCATC	2 cut(s)	159, 1095
Sfr274I	CTCGAG	1 cut(s)	926
SlaI	CTCGAG	1 cut(s)	926
SmiMI	CAYNNNNRTG	1 cut(s)	580
SmlI	CTYRAG	2 cut(s)	454, 926
SmoI	CTYRAG	2 cut(s)	454, 926
SphI	GCATGC	2 cut(s)	441, 863
Sse9I	AATT	8 cut(s)	53, 107, 256, 493, 590, 729, 864, 1010
SsiI	CCGC	1 cut(s)	653
SspI	AATATT	1 cut(s)	877
SspMI	CTAG	1 cut(s)	705
StyD4I	CCNGG	2 cut(s)	93, 532
StyI	CCWWGG	2 cut(s)	9, 466
TaaI	ACNGT	5 cut(s)	103, 133, 608, 795, 992
TaqI	TCGA	2 cut(s)	806, 927
TasI	AATT	8 cut(s)	53, 107, 256, 493, 590, 729, 864, 1010
TatI	WGTACW	1 cut(s)	713
TfiI	GAWTC	5 cut(s)	59, 326, 398, 671, 827
Tru1I	TTAA	4 cut(s)	105, 147, 564, 732
Tru9I	TTAA	4 cut(s)	105, 147, 564, 732
TscAI	CASTG	3 cut(s)	592, 859, 955
TseFI	GTSAC	3 cut(s)	185, 608, 620
TseI	GCWGC	1 cut(s)	1065
Tsp45I	GTSAC	3 cut(s)	185, 608, 620
TspDTI	ATGAA	8 cut(s)	183, 299, 606, 615, 648, 804, 953, 962
TspGWI	ACGGA	1 cut(s)	908
TspRI	CASTG	3 cut(s)	592, 859, 955
XapI	RAATTY	5 cut(s)	53, 107, 493, 590, 1010
XceI	RCATGY	3 cut(s)	296, 441, 863
XhoI	CTCGAG	1 cut(s)	926
XmnI	GAANNNNTTC	3 cut(s)	960, 1010, 1038
XspI	CTAG	1 cut(s)	705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.