Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0004731

Physical Location & Seq

Genomic Coordinates Forward (+)

28105017 .. 28110743

Gene Structure 5727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1232800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGATCAGGATGGATGTGAAAGGTGTAACCTGGGTTGGGGGTGTATACCAGAAATTCGAGACTATGTGCTTGGAGGTAGAAGAAGATATGTACCAGGACACAGTCAAATTTGTTGAGAATCAGGTACAGACTGTTGGTGCAAGTGTTAAAAAGTTCTATGCAGAAGTAATGCAAGATTTGGTCTGTCACTCTTCAGTGGATCCGGAGATTATGCCAGCCTTTGGGGACCTTGTAGAAAATAATTTTCATGTTGATAATTCTAAAAAGTCAAAGGTTAGTAAGAAAGGAGAGCCGGTAAAAGTCGATGTTGAAAAATTGAGTGGGGATTCAGAGGTTATTGCTGCAATGAATATGGATATGGACCATAAATCATTGTTCCATGGACAGCACATGGATGAATATCGCATGCTATCCTCAGGGAATTGTGCTGGAGGAGCATGCTCTGATGTATACTTAAGACAAGACTATGATGGGAGTAATTTTAATAATTCAAACTCGGTTGTCAAAGAAAACCCAATCAAGGAGAACTTACCCGGGGCAATCACTCCGGTTGAATCTGATTTGGGTAGGCCATCATCATCCTGCCGTGTAAATTTGAATGATACCCATGAAGTTTCGAGCGAACGTAGAGATACAGCTTTAACCCCATCTATAACCGAAGGTATGACATGTAAGTCCACAAGGGAAAGTTGTGTGATTGCAAATGCAAGCCAATGTACAGCTGATGTTTCAGTTGACAGCCGAACATCTAATATGATTGTTTTGGATAAATTGGAAGCAAAAGAATGGAACGAAATACCAGATTCATCCTTTGGTGGCTCATCAGTAGAATCAAATGGATCCTTTCCAAGTGGACAAGTACACTCTGAAAAATATGCTGCCAAGGAAATCTCTGCGTCTCATCCTGGGGGTTTGCATGACTCCAATTTTTATGCAACTGAGAGTAATACTGTTGTACATGGAACGGAAACCATTCAACAATCTGAAAGGGCAAAGCTTGAGGAGACTTGTGTAATGGTGACTGGTGAGGACATTCATTTTGTTCCTCACGTGGACAGCAAACATAGGCCTTACAAGAAAAAAATTCAGAATGTCTTTGCTTTGAGGAAGAGGTCAGCAAGGAAGCAAGAATATGAGCAGCTTGCATTATGGTATGGGGATGATGAGAAATCAAATTTAGAAAGTGGAGAACGTCTCGGGCATTCTCCGACCGTGGAGGAGACACAGAAATCACCAGCTCATGAATTTTGTGAATCTGAATGGGAGATTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

425

Amino Acids

47.15

Weight (kDa)

5.02

Isoelectric Point (pI)

43.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130
fragaria_vesca	FvH4_6g27121 FvH4_6g27121
malus_domestica	MD09G1239700.v1.1 MD17G1232800.v1.1
prunus_persica	Prupe.3G122900_v2.0.a1
pyrus_communis	pycom09g15830 pycom17g23540 pycom17g23560
rosa_chinensis	RchiOBHm_Chr2g0128471 RchiOBHm_Chr2g0128481 RchiOBHm_Chr2g0129081
rosa_laevigata	RLG00000019053
rosa_multiflora	Rmu_ssc0000449.1_g000008
rosa_roxburghii	Rroxscaffold_2G00114890
rosa_rugosa	Rorug02G0284300.1 Rorug02G0284400 Rorug02G0284500
rosa_samantha	Rh2AG336700 Rh2BG344700 Rh2CG324000 Rh2DG361600 Rh3BG289900 Rh5AG278500
rosa_wichuraiana	Rw2G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	673
AccB7I	CCANNNNNTGG	1 cut(s)	221
AccI	GTMKAC	2 cut(s)	45, 450
AccIII	TCCGGA	1 cut(s)	202
AclWI	GGATC	4 cut(s)	194, 207, 834, 847
AcsI	RAATTY	6 cut(s)	53, 107, 592, 1083, 1174, 1244
AcuI	CTGAAG	1 cut(s)	177
AcvI	CACGTG	1 cut(s)	1051
AfaI	GTAC	5 cut(s)	92, 126, 718, 861, 957
AfiI	CCNNNNNNNGG	3 cut(s)	36, 221, 520
AflII	CTTAAG	1 cut(s)	454
AflIII	ACRYGT	1 cut(s)	668
AgsI	TTSAA	5 cut(s)	311, 492, 554, 598, 977
AjnI	CCWGG	3 cut(s)	29, 93, 904
AluBI	AGCT	5 cut(s)	638, 722, 997, 1141, 1238
AluI	AGCT	5 cut(s)	638, 722, 997, 1141, 1238
Alw26I	GTCTC	5 cut(s)	53, 903, 998, 1199, 1214
AlwI	GGATC	4 cut(s)	194, 207, 834, 847
Ama87I	CYCGRG	2 cut(s)	533, 1196
Aor13HI	TCCGGA	1 cut(s)	202
AoxI	GGCC	2 cut(s)	569, 1067
ApeKI	GCWGC	3 cut(s)	341, 878, 1138
ApoI	RAATTY	6 cut(s)	53, 107, 592, 1083, 1174, 1244
ArsI	GACNNNNNNTTYG	2 cut(s)	1022, 1054
Asp700I	GAANNNNTTC	1 cut(s)	972
AspS9I	GGNCC	2 cut(s)	226, 361
AsuC2I	CCSGG	2 cut(s)	534, 535
AsuHPI	GGTGA	3 cut(s)	1030, 1037, 1224
AvaI	CYCGRG	2 cut(s)	533, 1196
AvaII	GGWCC	2 cut(s)	226, 361
AxyI	CCTNAGG	1 cut(s)	415
BamHI	GGATCC	2 cut(s)	199, 839
BbrPI	CACGTG	1 cut(s)	1051
BbvI	GCAGC	3 cut(s)	328, 865, 1150
BccI	CCATC	4 cut(s)	4, 464, 580, 655
BceAI	ACGGC	1 cut(s)	570
BciT130I	CCWGG	3 cut(s)	31, 95, 906
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	2 cut(s)	534, 535
BcoDI	GTCTC	5 cut(s)	53, 903, 998, 1199, 1214
BfaI	CTAG	1 cut(s)	1273
BfrI	CTTAAG	1 cut(s)	454
BisI	GCNGC	3 cut(s)	342, 879, 1139
BlsI	GCNGC	3 cut(s)	343, 880, 1140
Bme1390I	CCNGG	5 cut(s)	31, 95, 534, 535, 906
Bme18I	GGWCC	2 cut(s)	226, 361
BmeT110I	CYCGRG	2 cut(s)	533, 1196
BmgT120I	GGNCC	2 cut(s)	226, 361
BmiI	GGNNCC	3 cut(s)	201, 227, 841
BmrFI	CCNGG	5 cut(s)	31, 95, 534, 535, 906
BplI	GAGNNNNNCTC	2 cut(s)	1179, 1211
BpmI	CTGGAG	1 cut(s)	450
BpuEI	CTTGAG	1 cut(s)	1019
BpuMI	CCSGG	2 cut(s)	534, 535
BsaAI	YACGTR	1 cut(s)	1051
BsaBI	GATNNNNATC	1 cut(s)	399
BsaJI	CCNNGG	7 cut(s)	30, 379, 533, 534, 882, 905, 1212
BsaWI	WCCGGW	2 cut(s)	202, 547
BsaXI	ACNNNNNCTCC	2 cut(s)	279, 309
Bsc4I	CCNNNNNNNGG	3 cut(s)	36, 221, 520
Bse118I	RCCGGY	1 cut(s)	292
Bse1I	ACTGG	1 cut(s)	1027
Bse21I	CCTNAGG	1 cut(s)	415
Bse3DI	GCAATG	1 cut(s)	351
Bse8I	GATNNNNATC	1 cut(s)	399
BseAI	TCCGGA	1 cut(s)	202
BseBI	CCWGG	3 cut(s)	31, 95, 906
BseDI	CCNNGG	7 cut(s)	30, 379, 533, 534, 882, 905, 1212
BseGI	GGATG	7 cut(s)	15, 19, 400, 578, 806, 901, 1165
BseJI	GATNNNNATC	1 cut(s)	399
BseLI	CCNNNNNNNGG	3 cut(s)	36, 221, 520
BseMI	GCAATG	1 cut(s)	351
BseMII	CTCAG	2 cut(s)	429, 930
BseNI	ACTGG	1 cut(s)	1027
BseRI	GAGGAG	3 cut(s)	447, 1016, 1232
BseXI	GCAGC	3 cut(s)	328, 865, 1150
Bsh1285I	CGRYCG	1 cut(s)	1212
BshFI	GGCC	2 cut(s)	571, 1069
BsiEI	CGRYCG	1 cut(s)	1212
BsiHKCI	CYCGRG	2 cut(s)	533, 1196
BsiSI	CCGG	4 cut(s)	203, 293, 534, 548
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	3 cut(s)	36, 221, 520
BsmAI	GTCTC	5 cut(s)	53, 903, 998, 1199, 1214
BsmBI	CGTCTC	2 cut(s)	903, 1199
BsmFI	GGGAC	1 cut(s)	239
BsmI	GAATGC	1 cut(s)	1201
BsnI	GGCC	2 cut(s)	571, 1069
BsoBI	CYCGRG	2 cut(s)	533, 1196
Bsp13I	TCCGGA	1 cut(s)	202
Bsp1407I	TGTACA	2 cut(s)	716, 955
Bsp143I	GATC	3 cut(s)	3, 199, 839
Bsp19I	CCATGG	1 cut(s)	379
BspANI	GGCC	2 cut(s)	571, 1069
BspCNI	CTCAG	2 cut(s)	428, 931
BspEI	TCCGGA	1 cut(s)	202
BspHI	TCATGA	1 cut(s)	1240
BspLI	GGNNCC	3 cut(s)	201, 227, 841
BspPI	GGATC	4 cut(s)	194, 207, 834, 847
BspTI	CTTAAG	1 cut(s)	454
BsrDI	GCAATG	1 cut(s)	351
BsrFI	RCCGGY	1 cut(s)	292
BsrGI	TGTACA	2 cut(s)	716, 955
BsrI	ACTGG	1 cut(s)	1027
BssAI	RCCGGY	1 cut(s)	292
BssECI	CCNNGG	7 cut(s)	30, 379, 533, 534, 882, 905, 1212
BssMI	GATC	3 cut(s)	3, 199, 839
BssNAI	GTATAC	2 cut(s)	46, 451
BssT1I	CCWWGG	2 cut(s)	379, 882
Bst1107I	GTATAC	2 cut(s)	46, 451
Bst2UI	CCWGG	3 cut(s)	31, 95, 906
Bst4CI	ACNGT	4 cut(s)	103, 133, 952, 1213
Bst6I	CTCTTC	2 cut(s)	196, 1103
BstAFI	CTTAAG	1 cut(s)	454
BstAUI	TGTACA	2 cut(s)	716, 955
BstBAI	YACGTR	1 cut(s)	1051
BstC8I	GCNNGC	5 cut(s)	216, 407, 439, 709, 1143
BstDEI	CTNAG	2 cut(s)	415, 939
BstDSI	CCRYGG	2 cut(s)	379, 1212
BstF5I	GGATG	7 cut(s)	15, 19, 400, 578, 806, 901, 1165
BstKTI	GATC	3 cut(s)	6, 202, 842
BstMAI	GTCTC	5 cut(s)	53, 903, 998, 1199, 1214
BstMBI	GATC	3 cut(s)	3, 199, 839
BstMCI	CGRYCG	1 cut(s)	1212
BstMWI	GCNNNNNNNGC	1 cut(s)	434
BstNI	CCWGG	3 cut(s)	31, 95, 906
BstNSI	RCATGY	3 cut(s)	409, 441, 672
BstSCI	CCNGG	5 cut(s)	29, 93, 532, 533, 904
BstV1I	GCAGC	3 cut(s)	328, 865, 1150
BstX2I	RGATCY	2 cut(s)	199, 839
BstYI	RGATCY	2 cut(s)	199, 839
BstZ17I	GTATAC	2 cut(s)	46, 451
Bsu36I	CCTNAGG	1 cut(s)	415
BsuRI	GGCC	2 cut(s)	571, 1069
BtgI	CCRYGG	2 cut(s)	379, 1212
BtsCI	GGATG	7 cut(s)	15, 19, 400, 578, 806, 901, 1165
BtsIMutI	CAGTG	1 cut(s)	201
Cac8I	GCNNGC	5 cut(s)	216, 407, 439, 709, 1143
CciI	TCATGA	1 cut(s)	1240
Cfr10I	RCCGGY	1 cut(s)	292
Cfr13I	GGNCC	2 cut(s)	226, 361
Cfr9I	CCCGGG	1 cut(s)	533
CseI	GACGC	1 cut(s)	885
Csp6I	GTAC	5 cut(s)	91, 125, 717, 860, 956
CviQI	GTAC	5 cut(s)	91, 125, 717, 860, 956
DdeI	CTNAG	2 cut(s)	415, 939
DpnI	GATC	3 cut(s)	5, 201, 841
DpnII	GATC	3 cut(s)	3, 199, 839
DrdI	GACNNNNNNGTC	1 cut(s)	673
DseDI	GACNNNNNNGTC	1 cut(s)	673
Eam1104I	CTCTTC	2 cut(s)	196, 1103
EarI	CTCTTC	2 cut(s)	196, 1103
Eco130I	CCWWGG	2 cut(s)	379, 882
Eco147I	AGGCCT	1 cut(s)	1069
Eco47I	GGWCC	2 cut(s)	226, 361
Eco57I	CTGAAG	1 cut(s)	177
Eco72I	CACGTG	1 cut(s)	1051
Eco81I	CCTNAGG	1 cut(s)	415
Eco88I	CYCGRG	2 cut(s)	533, 1196
EcoO109I	RGGNCCY	1 cut(s)	226
EcoRII	CCWGG	3 cut(s)	29, 93, 904
EcoT14I	CCWWGG	2 cut(s)	379, 882
ErhI	CCWWGG	2 cut(s)	379, 882
Esp3I	CGTCTC	2 cut(s)	903, 1199
FalI	AAGNNNNNCTT	2 cut(s)	512, 544
FaqI	GGGAC	1 cut(s)	239
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	2 cut(s)	45, 450
Fnu4HI	GCNGC	3 cut(s)	342, 879, 1139
FokI	GGATG	7 cut(s)	22, 26, 407, 565, 793, 888, 1172
Fsp4HI	GCNGC	3 cut(s)	342, 879, 1139
FspBI	CTAG	1 cut(s)	1273
GluI	GCNGC	3 cut(s)	342, 879, 1139
GsuI	CTGGAG	1 cut(s)	450
HaeIII	GGCC	2 cut(s)	571, 1069
HapII	CCGG	4 cut(s)	203, 293, 534, 548
HgaI	GACGC	1 cut(s)	885
HincII	GTYRAC	1 cut(s)	736
HindII	GTYRAC	1 cut(s)	736
HindIII	AAGCTT	1 cut(s)	995
HinfI	GANTC	8 cut(s)	118, 326, 554, 803, 830, 920, 1253, 1267
HpaII	CCGG	4 cut(s)	203, 293, 534, 548
HphI	GGTGA	3 cut(s)	1030, 1037, 1224
Hpy166II	GTNNAC	7 cut(s)	46, 451, 678, 736, 854, 862, 1054
Hpy188I	TCNGA	8 cut(s)	331, 445, 559, 868, 985, 1089, 1209, 1258
Hpy188III	TCNNGA	4 cut(s)	7, 58, 203, 1241
Hpy8I	GTNNAC	7 cut(s)	46, 451, 678, 736, 854, 862, 1054
HpyAV	CCTTC	1 cut(s)	653
HpyCH4III	ACNGT	4 cut(s)	103, 133, 952, 1213
HpyCH4IV	ACGT	3 cut(s)	625, 1050, 1192
HpyCH4V	TGCA	9 cut(s)	140, 161, 172, 344, 701, 707, 916, 935, 1145
HpyF10VI	GCNNNNNNNGC	1 cut(s)	434
HpyF3I	CTNAG	2 cut(s)	415, 939
HpySE526I	ACGT	3 cut(s)	625, 1050, 1192
Kpn2I	TCCGGA	1 cut(s)	202
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 199, 839
LmnI	GCTCC	1 cut(s)	434
Lsp1109I	GCAGC	3 cut(s)	328, 865, 1150
MaeI	CTAG	1 cut(s)	1273
MaeII	ACGT	3 cut(s)	625, 1050, 1192
MaeIII	GTNAC	3 cut(s)	25, 185, 1018
MalI	GATC	3 cut(s)	5, 201, 841
MboI	GATC	3 cut(s)	3, 199, 839
MboII	GAAGA	4 cut(s)	92, 95, 183, 1120
MflI	RGATCY	2 cut(s)	199, 839
MlyI	GAGTC	1 cut(s)	914
MmeI	TCCRAC	1 cut(s)	1232
MroI	TCCGGA	1 cut(s)	202
MroXI	GAANNNNTTC	1 cut(s)	972
MseI	TTAA	4 cut(s)	147, 455, 483, 641
MslI	CAYNNNNRTG	1 cut(s)	393
MspA1I	CMGCKG	1 cut(s)	722
MspCI	CTTAAG	1 cut(s)	454
MspI	CCGG	4 cut(s)	203, 293, 534, 548
MspR9I	CCNGG	5 cut(s)	31, 95, 534, 535, 906
Mva1269I	GAATGC	1 cut(s)	1201
MvaI	CCWGG	3 cut(s)	31, 95, 906
MwoI	GCNNNNNNNGC	1 cut(s)	434
NciI	CCSGG	2 cut(s)	534, 535
NcoI	CCATGG	1 cut(s)	379
NdeII	GATC	3 cut(s)	3, 199, 839
NlaIV	GGNNCC	3 cut(s)	201, 227, 841
NmuCI	GTSAC	2 cut(s)	185, 1018
NspI	RCATGY	3 cut(s)	409, 441, 672
PaeI	GCATGC	2 cut(s)	409, 441
PagI	TCATGA	1 cut(s)	1240
PceI	AGGCCT	1 cut(s)	1069
PciI	ACATGT	1 cut(s)	668
PctI	GAATGC	1 cut(s)	1201
PdmI	GAANNNNTTC	1 cut(s)	972
PfeI	GAWTC	7 cut(s)	118, 326, 554, 803, 830, 1253, 1267
PflFI	GACNNNGTC	1 cut(s)	101
PflMI	CCANNNNNTGG	1 cut(s)	221
PkrI	GCNGC	3 cut(s)	343, 880, 1140
PleI	GAGTC	1 cut(s)	914
PmaCI	CACGTG	1 cut(s)	1051
PmlI	CACGTG	1 cut(s)	1051
PpsI	GAGTC	1 cut(s)	914
Ppu21I	YACGTR	1 cut(s)	1051
PpuMI	RGGWCCY	1 cut(s)	226
PscI	ACATGT	1 cut(s)	668
Psp5II	RGGWCCY	1 cut(s)	226
Psp6I	CCWGG	3 cut(s)	29, 93, 904
PspCI	CACGTG	1 cut(s)	1051
PspGI	CCWGG	3 cut(s)	29, 93, 904
PspN4I	GGNNCC	3 cut(s)	201, 227, 841
PspPI	GGNCC	2 cut(s)	226, 361
PspPPI	RGGWCCY	1 cut(s)	226
PsuI	RGATCY	2 cut(s)	199, 839
PsyI	GACNNNGTC	1 cut(s)	101
PvuII	CAGCTG	1 cut(s)	722
RsaI	GTAC	5 cut(s)	92, 126, 718, 861, 957
RsaNI	GTAC	5 cut(s)	91, 125, 717, 860, 956
RseI	CAYNNNNRTG	1 cut(s)	393
SaqAI	TTAA	4 cut(s)	147, 455, 483, 641
SatI	GCNGC	3 cut(s)	342, 879, 1139
Sau3AI	GATC	3 cut(s)	3, 199, 839
Sau96I	GGNCC	2 cut(s)	226, 361
SchI	GAGTC	1 cut(s)	914
ScrFI	CCNGG	5 cut(s)	31, 95, 534, 535, 906
SinI	GGWCC	2 cut(s)	226, 361
SmaI	CCCGGG	1 cut(s)	535
SmiMI	CAYNNNNRTG	1 cut(s)	393
SmlI	CTYRAG	2 cut(s)	454, 998
SmoI	CTYRAG	2 cut(s)	454, 998
SphI	GCATGC	2 cut(s)	409, 441
SseBI	AGGCCT	1 cut(s)	1069
SspMI	CTAG	1 cut(s)	1273
StuI	AGGCCT	1 cut(s)	1069
StyD4I	CCNGG	5 cut(s)	29, 93, 532, 533, 904
StyI	CCWWGG	2 cut(s)	379, 882
TaaI	ACNGT	4 cut(s)	103, 133, 952, 1213
TaiI	ACGT	3 cut(s)	628, 1053, 1195
TaqI	TCGA	3 cut(s)	57, 303, 617
TatI	WGTACW	3 cut(s)	716, 859, 955
TfiI	GAWTC	7 cut(s)	118, 326, 554, 803, 830, 1253, 1267
Tru1I	TTAA	4 cut(s)	147, 455, 483, 641
Tru9I	TTAA	4 cut(s)	147, 455, 483, 641
TscAI	CASTG	1 cut(s)	201
TseFI	GTSAC	2 cut(s)	185, 1018
TseI	GCWGC	3 cut(s)	341, 878, 1138
Tsp45I	GTSAC	2 cut(s)	185, 1018
TspDTI	ATGAA	7 cut(s)	236, 362, 411, 624, 795, 1025, 1257
TspGWI	ACGGA	1 cut(s)	980
TspMI	CCCGGG	1 cut(s)	533
TspRI	CASTG	1 cut(s)	201
Tth111I	GACNNNGTC	1 cut(s)	101
Van91I	CCANNNNNTGG	1 cut(s)	221
Vha464I	CTTAAG	1 cut(s)	454
VpaK11BI	GGWCC	2 cut(s)	226, 361
XapI	RAATTY	6 cut(s)	53, 107, 592, 1083, 1174, 1244
XceI	RCATGY	3 cut(s)	409, 441, 672
XmaI	CCCGGG	1 cut(s)	533
XmiI	GTMKAC	2 cut(s)	45, 450
XmnI	GAANNNNTTC	1 cut(s)	972
XspI	CTAG	1 cut(s)	1273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.