RchiOBHm_Chr2g0128471

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0004731
Physical Location & Seq
Reverse (-)
43566528 .. 43568044
1517 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50024

Sequence Viewer

Length: 420 bp
ATGAGATGTGATTCCATGAGGGAAAGATGTGTGGTTGCGAATGCTAGCCAATGTACAGATGATGTTTCAATTAACTGCCAATCATCTGATTTGATTGTTTTGGATAAATCTGATGGAAAAAGATGGAATGAACTGTTAGAGTCATCGATTGGTGGGTTATCAGCTGAATCAAATGGTGGATCTAATATCTCCAGTGTGCATGGAACGGAAATCAGTCAACAATCTGACAAGGCAAAGCTCGAGGAAACTTGTGTGATGGTCAGTGGTGAAGAACTTCATTTTGTTCATCACATGGTAGCCAACTGTAAGCCTTACAAGAAAAAATTCCAAAAGCCTTCACTTCAAGAACGAGTTCAGCAAGGAAACAAGAATATGAGCAGCTTGCATTATGGCATGGGCATCATACAAAAGCATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.43

Weight (kDa)

6.58

Isoelectric Point (pI)

54.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 187
AcsI RAATTY 1 cut(s) 323
AfaI GTAC 1 cut(s) 55
AgsI TTSAA 2 cut(s) 69, 344
AluBI AGCT 3 cut(s) 164, 238, 381
AluI AGCT 3 cut(s) 164, 238, 381
AlwI GGATC 1 cut(s) 187
Ama87I CYCGRG 1 cut(s) 239
ApeKI GCWGC 1 cut(s) 378
ApoI RAATTY 1 cut(s) 323
Asp700I GAANNNNTTC 3 cut(s) 273, 323, 351
AsuHPI GGTGA 1 cut(s) 278
AsuNHI GCTAGC 1 cut(s) 44
AvaI CYCGRG 1 cut(s) 239
BbvI GCAGC 1 cut(s) 390
BccI CCATC 3 cut(s) 107, 117, 250
BfaI CTAG 1 cut(s) 45
BisI GCNGC 1 cut(s) 379
BlsI GCNGC 1 cut(s) 380
BmeT110I CYCGRG 1 cut(s) 239
BmsI GCATC 1 cut(s) 408
BmtI GCTAGC 1 cut(s) 48
BpmI CTGGAG 1 cut(s) 175
Bsa29I ATCGAT 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 192
BseCI ATCGAT 1 cut(s) 146
BseNI ACTGG 1 cut(s) 192
BseXI GCAGC 1 cut(s) 390
BshVI ATCGAT 1 cut(s) 146
BsiHKCI CYCGRG 1 cut(s) 239
BsmI GAATGC 1 cut(s) 46
BsoBI CYCGRG 1 cut(s) 239
Bsp1407I TGTACA 1 cut(s) 53
Bsp143I GATC 1 cut(s) 179
BspDI ATCGAT 1 cut(s) 146
BspOI GCTAGC 1 cut(s) 48
BspPI GGATC 1 cut(s) 187
BsrGI TGTACA 1 cut(s) 53
BsrI ACTGG 1 cut(s) 192
BssMI GATC 1 cut(s) 179
Bst4CI ACNGT 2 cut(s) 135, 305
BstAUI TGTACA 1 cut(s) 53
BstC8I GCNNGC 2 cut(s) 46, 383
BstKTI GATC 1 cut(s) 182
BstMBI GATC 1 cut(s) 179
BstV1I GCAGC 1 cut(s) 390
BstX2I RGATCY 1 cut(s) 179
BstYI RGATCY 1 cut(s) 179
Bsu15I ATCGAT 1 cut(s) 146
BsuTUI ATCGAT 1 cut(s) 146
BtsIMutI CAGTG 2 cut(s) 199, 268
Cac8I GCNNGC 2 cut(s) 46, 383
ClaI ATCGAT 1 cut(s) 146
Csp6I GTAC 1 cut(s) 54
CviAII CATG 4 cut(s) 16, 200, 292, 394
CviJI RGCY 7 cut(s) 48, 164, 238, 299, 310, 334, 381
CviKI_1 RGCY 7 cut(s) 48, 164, 238, 299, 310, 334, 381
CviQI GTAC 1 cut(s) 54
DpnI GATC 1 cut(s) 181
DpnII GATC 1 cut(s) 179
Eco88I CYCGRG 1 cut(s) 239
FaeI CATG 4 cut(s) 19, 203, 295, 397
FaiI YATR 7 cut(s) 17, 201, 293, 374, 390, 395, 404
FatI CATG 4 cut(s) 15, 199, 291, 393
Fnu4HI GCNGC 1 cut(s) 379
Fsp4HI GCNGC 1 cut(s) 379
FspBI CTAG 1 cut(s) 45
GluI GCNGC 1 cut(s) 379
GsuI CTGGAG 1 cut(s) 175
Hin1II CATG 4 cut(s) 19, 203, 295, 397
HincII GTYRAC 1 cut(s) 218
HindII GTYRAC 1 cut(s) 218
HinfI GANTC 3 cut(s) 11, 140, 167
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 1 cut(s) 218
Hpy188I TCNGA 3 cut(s) 88, 112, 226
Hpy188III TCNNGA 1 cut(s) 344
Hpy8I GTNNAC 1 cut(s) 218
HpyAV CCTTC 1 cut(s) 345
HpyCH4III ACNGT 2 cut(s) 135, 305
HpyCH4V TGCA 2 cut(s) 199, 385
Hsp92II CATG 4 cut(s) 19, 203, 295, 397
Kzo9I GATC 1 cut(s) 179
LpnPI CCDG 1 cut(s) 205
Lsp1109I GCAGC 1 cut(s) 390
LweI GCATC 1 cut(s) 408
MaeI CTAG 1 cut(s) 45
MalI GATC 1 cut(s) 181
MboI GATC 1 cut(s) 179
MboII GAAGA 1 cut(s) 281
MflI RGATCY 1 cut(s) 179
MluCI AATT 2 cut(s) 69, 323
MlyI GAGTC 1 cut(s) 149
MnlI CCTC 2 cut(s) 12, 235
MroXI GAANNNNTTC 3 cut(s) 273, 323, 351
MseI TTAA 1 cut(s) 72
MspA1I CMGCKG 1 cut(s) 164
Mva1269I GAATGC 1 cut(s) 46
NdeII GATC 1 cut(s) 179
NheI GCTAGC 1 cut(s) 44
NlaIII CATG 4 cut(s) 19, 203, 295, 397
PaeR7I CTCGAG 1 cut(s) 239
PctI GAATGC 1 cut(s) 46
PdmI GAANNNNTTC 3 cut(s) 273, 323, 351
PfeI GAWTC 2 cut(s) 11, 167
PkrI GCNGC 1 cut(s) 380
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
PspXI VCTCGAGB 1 cut(s) 239
PsuI RGATCY 1 cut(s) 179
PvuII CAGCTG 1 cut(s) 164
RsaI GTAC 1 cut(s) 55
RsaNI GTAC 1 cut(s) 54
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 1 cut(s) 379
Sau3AI GATC 1 cut(s) 179
SchI GAGTC 1 cut(s) 149
SetI ASST 3 cut(s) 166, 240, 383
SfaNI GCATC 1 cut(s) 408
Sfr274I CTCGAG 1 cut(s) 239
SlaI CTCGAG 1 cut(s) 239
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 2 cut(s) 69, 323
SspMI CTAG 1 cut(s) 45
TaaI ACNGT 2 cut(s) 135, 305
TaqI TCGA 2 cut(s) 146, 240
TasI AATT 2 cut(s) 69, 323
TatI WGTACW 1 cut(s) 53
TfiI GAWTC 2 cut(s) 11, 167
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TscAI CASTG 2 cut(s) 199, 268
TseI GCWGC 1 cut(s) 378
TspDTI ATGAA 3 cut(s) 144, 266, 275
TspGWI ACGGA 1 cut(s) 221
TspRI CASTG 2 cut(s) 199, 268
XapI RAATTY 1 cut(s) 323
XhoI CTCGAG 1 cut(s) 239
XmnI GAANNNNTTC 3 cut(s) 273, 323, 351
XspI CTAG 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.