Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004731

Physical Location & Seq

Genomic Coordinates Forward (+)

21886996 .. 21889130

Gene Structure 2135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g23560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGATGTGAAAGGTGTAACCTGGGTTGGGGGTGTATACCAGAAATTCGAGACTATGTGCTTGGAGGTAGAAGAAGATATGTACCAGGACACAGTCAAATTTGTTGAGAATCAGGTACAGACTGTTGGTGCAAGTGTTAAAGAGTTCTATGCAGATGTAATGCAAGATTTGGTCTGTCACTCTTCAGTGAATTCGGAGATTATGCCAGCCTTTGGGGACCCTGTAGAAAATAATTTTCATGTTGATAATTCTAAAAAATCAAAGGTTAGTAAGAAAGGAGAGCCGGTAAAAGTTGATGTTGAAAAATTGAGTGGGGATTCAGAGGTGATTGCTGCAATGAATATGGATATGGACCATAAATCATTGTTCCGTGGACAGCACATGGATGAATATCGCATGCTATCCTCAGGGAATTGTGCTGGAGGAGCATGCTCTGATGTATACTTAAGACAAGACTACGATGGGAGTAATTTTAATAATTCAAACTCGGTTGTCAAAGAAAACCCAATCAAGGAGAACTTTCCCGGGGAAATCACTCCGGTTGAATCTGATTTAGGCAGGCCATCATCATCCTGCCGTGTAAATTTGAATGATACCCATGAAGTTTCGAGGAAATGTAGAGATGCAGCTATAACCCCATCTATAACCGAAGGTATGACCTTTAAGTCCACAAGGGAAAGTTGTGTGATTGCAAATGCAAGCCAATGTACAGCTGATGCTTCAGTTGACAGCCGAACATCTAATATGATTGTTTTGGATAAATTGGAAGCAAAAGAATGGAACGAAATAACAGATTCATCCTTTGGTGGCGCATCAGTAGAATCAAATGGATCCTCTCCAAGTGGACAAGTACACACTGAAAAATCTGCTGCCAAGGAAATCTCTGCGTCTCATCCTGGGGGTTTGCATGACTCCAATTTTCATGCAACTGAGAGTAATATTGTTGTACATGGAACGGAAACCATTCAGCAATCTGAAGGGGCAAAGCTTGAGGAGACTTGTGTAATGGTAACTGGTGAGGACGTTCATTTTGTTCATCGCATGGACAGCAAACATAGGCCTGACAAGAAAAAAATTCAGAATGCCTTTGCTTTGAGGAAGAGGTCAGCAAGGAAGCAAGAATATGAGCAGCTTGCATTATGGTATGGGGATGATGAAAAATCAAATTTAGAAAGTGGAGAACGTCTCAGGAATTCTTTGACTGTGGAGGAGACACAGAAATCACCAGCTCATGAATTTTGTGAATCTGAATGGGAGATTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

422

Amino Acids

46.67

Weight (kDa)

4.99

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130
fragaria_vesca	FvH4_6g27121 FvH4_6g27121
malus_domestica	MD09G1239700.v1.1 MD17G1232800.v1.1
prunus_persica	Prupe.3G122900_v2.0.a1
pyrus_communis	pycom09g15830 pycom17g23540 pycom17g23560
rosa_chinensis	RchiOBHm_Chr2g0128471 RchiOBHm_Chr2g0128481 RchiOBHm_Chr2g0129081
rosa_laevigata	RLG00000019053
rosa_multiflora	Rmu_ssc0000449.1_g000008
rosa_roxburghii	Rroxscaffold_2G00114890
rosa_rugosa	Rorug02G0284300.1 Rorug02G0284400 Rorug02G0284500
rosa_samantha	Rh2AG336700 Rh2BG344700 Rh2CG324000 Rh2DG361600 Rh3BG289900 Rh5AG278500
rosa_wichuraiana	Rw2G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	664
AccB7I	CCANNNNNTGG	1 cut(s)	212
AccI	GTMKAC	2 cut(s)	36, 441
AclWI	GGATC	2 cut(s)	825, 838
AcsI	RAATTY	8 cut(s)	44, 98, 190, 583, 1074, 1165, 1192, 1235
AcuI	CTGAAG	3 cut(s)	168, 705, 996
AfaI	GTAC	5 cut(s)	83, 117, 709, 852, 948
AfiI	CCNNNNNNNGG	3 cut(s)	27, 212, 511
AflII	CTTAAG	1 cut(s)	445
AgsI	TTSAA	4 cut(s)	302, 483, 545, 589
AjnI	CCWGG	3 cut(s)	20, 84, 895
AluBI	AGCT	5 cut(s)	629, 713, 988, 1132, 1229
AluI	AGCT	5 cut(s)	629, 713, 988, 1132, 1229
Alw26I	GTCTC	5 cut(s)	44, 894, 989, 1190, 1205
AlwI	GGATC	2 cut(s)	825, 838
Ama87I	CYCGRG	1 cut(s)	524
AoxI	GGCC	2 cut(s)	560, 1058
ApeKI	GCWGC	4 cut(s)	332, 626, 869, 1129
ApoI	RAATTY	8 cut(s)	44, 98, 190, 583, 1074, 1165, 1192, 1235
ArsI	GACNNNNNNTTYG	2 cut(s)	1013, 1045
Asp700I	GAANNNNTTC	1 cut(s)	963
AspLEI	GCGC	1 cut(s)	812
AspS9I	GGNCC	2 cut(s)	217, 352
AsuC2I	CCSGG	2 cut(s)	525, 526
AsuHPI	GGTGA	3 cut(s)	337, 1028, 1215
AvaI	CYCGRG	1 cut(s)	524
AvaII	GGWCC	2 cut(s)	217, 352
AxyI	CCTNAGG	1 cut(s)	406
BamHI	GGATCC	1 cut(s)	830
BbvI	GCAGC	4 cut(s)	319, 638, 856, 1141
BccI	CCATC	3 cut(s)	455, 571, 646
BceAI	ACGGC	1 cut(s)	561
BciT130I	CCWGG	3 cut(s)	22, 86, 897
BcnI	CCSGG	2 cut(s)	525, 526
BcoDI	GTCTC	5 cut(s)	44, 894, 989, 1190, 1205
BfaI	CTAG	1 cut(s)	1264
BfmI	CTRYAG	1 cut(s)	222
BfrI	CTTAAG	1 cut(s)	445
BisI	GCNGC	4 cut(s)	333, 627, 870, 1130
BlsI	GCNGC	4 cut(s)	334, 628, 871, 1131
Bme1390I	CCNGG	5 cut(s)	22, 86, 525, 526, 897
Bme18I	GGWCC	2 cut(s)	217, 352
BmeT110I	CYCGRG	1 cut(s)	524
BmgT120I	GGNCC	2 cut(s)	217, 352
BmiI	GGNNCC	3 cut(s)	218, 219, 832
BmrFI	CCNGG	5 cut(s)	22, 86, 525, 526, 897
BmsI	GCATC	3 cut(s)	613, 706, 821
BplI	GAGNNNNNCTC	2 cut(s)	1170, 1202
BpmI	CTGGAG	1 cut(s)	441
BpuEI	CTTGAG	1 cut(s)	1010
BpuMI	CCSGG	2 cut(s)	525, 526
BsaBI	GATNNNNATC	1 cut(s)	390
BsaJI	CCNNGG	6 cut(s)	21, 370, 524, 525, 873, 896
BsaWI	WCCGGW	1 cut(s)	538
BsaXI	ACNNNNNCTCC	2 cut(s)	270, 300
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 212, 511
Bse118I	RCCGGY	1 cut(s)	283
Bse1I	ACTGG	1 cut(s)	1018
Bse21I	CCTNAGG	1 cut(s)	406
Bse3DI	GCAATG	1 cut(s)	342
Bse8I	GATNNNNATC	1 cut(s)	390
BseBI	CCWGG	3 cut(s)	22, 86, 897
BseDI	CCNNGG	6 cut(s)	21, 370, 524, 525, 873, 896
BseGI	GGATG	6 cut(s)	10, 391, 569, 797, 892, 1156
BseJI	GATNNNNATC	1 cut(s)	390
BseLI	CCNNNNNNNGG	3 cut(s)	27, 212, 511
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	3 cut(s)	420, 921, 1201
BseNI	ACTGG	1 cut(s)	1018
BseRI	GAGGAG	3 cut(s)	438, 1007, 1223
BseXI	GCAGC	4 cut(s)	319, 638, 856, 1141
BshFI	GGCC	2 cut(s)	562, 1060
BsiHKCI	CYCGRG	1 cut(s)	524
BsiSI	CCGG	3 cut(s)	284, 525, 539
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	3 cut(s)	27, 212, 511
BsmAI	GTCTC	5 cut(s)	44, 894, 989, 1190, 1205
BsmBI	CGTCTC	2 cut(s)	894, 1190
BsmFI	GGGAC	1 cut(s)	230
BsmI	GAATGC	1 cut(s)	1087
BsnI	GGCC	2 cut(s)	562, 1060
BsoBI	CYCGRG	1 cut(s)	524
Bsp1407I	TGTACA	2 cut(s)	707, 946
Bsp143I	GATC	1 cut(s)	830
BspANI	GGCC	2 cut(s)	562, 1060
BspCNI	CTCAG	3 cut(s)	419, 922, 1200
BspHI	TCATGA	1 cut(s)	1231
BspLI	GGNNCC	3 cut(s)	218, 219, 832
BspPI	GGATC	2 cut(s)	825, 838
BspTI	CTTAAG	1 cut(s)	445
BsrDI	GCAATG	1 cut(s)	342
BsrFI	RCCGGY	1 cut(s)	283
BsrGI	TGTACA	2 cut(s)	707, 946
BsrI	ACTGG	1 cut(s)	1018
BssAI	RCCGGY	1 cut(s)	283
BssECI	CCNNGG	6 cut(s)	21, 370, 524, 525, 873, 896
BssMI	GATC	1 cut(s)	830
BssNAI	GTATAC	2 cut(s)	37, 442
BssT1I	CCWWGG	1 cut(s)	873
Bst1107I	GTATAC	2 cut(s)	37, 442
Bst2UI	CCWGG	3 cut(s)	22, 86, 897
Bst4CI	ACNGT	3 cut(s)	94, 124, 1204
Bst6I	CTCTTC	2 cut(s)	187, 1094
BstAFI	CTTAAG	1 cut(s)	445
BstAUI	TGTACA	2 cut(s)	707, 946
BstC8I	GCNNGC	6 cut(s)	207, 398, 430, 560, 700, 1134
BstDEI	CTNAG	3 cut(s)	406, 930, 1187
BstDSI	CCRYGG	1 cut(s)	370
BstF5I	GGATG	6 cut(s)	10, 391, 569, 797, 892, 1156
BstHHI	GCGC	1 cut(s)	812
BstKTI	GATC	1 cut(s)	833
BstMAI	GTCTC	5 cut(s)	44, 894, 989, 1190, 1205
BstMBI	GATC	1 cut(s)	830
BstMWI	GCNNNNNNNGC	2 cut(s)	425, 1047
BstNI	CCWGG	3 cut(s)	22, 86, 897
BstNSI	RCATGY	2 cut(s)	400, 432
BstSCI	CCNGG	5 cut(s)	20, 84, 523, 524, 895
BstSFI	CTRYAG	1 cut(s)	222
BstV1I	GCAGC	4 cut(s)	319, 638, 856, 1141
BstX2I	RGATCY	1 cut(s)	830
BstYI	RGATCY	1 cut(s)	830
BstZ17I	GTATAC	2 cut(s)	37, 442
Bsu36I	CCTNAGG	1 cut(s)	406
BsuRI	GGCC	2 cut(s)	562, 1060
BtgI	CCRYGG	1 cut(s)	370
BtgZI	GCGATG	1 cut(s)	1022
BtsCI	GGATG	6 cut(s)	10, 391, 569, 797, 892, 1156
BtsIMutI	CAGTG	2 cut(s)	192, 855
Cac8I	GCNNGC	6 cut(s)	207, 398, 430, 560, 700, 1134
CciI	TCATGA	1 cut(s)	1231
CfoI	GCGC	1 cut(s)	812
Cfr10I	RCCGGY	1 cut(s)	283
Cfr13I	GGNCC	2 cut(s)	217, 352
Cfr9I	CCCGGG	1 cut(s)	524
CseI	GACGC	1 cut(s)	876
Csp6I	GTAC	5 cut(s)	82, 116, 708, 851, 947
CviQI	GTAC	5 cut(s)	82, 116, 708, 851, 947
DdeI	CTNAG	3 cut(s)	406, 930, 1187
DpnI	GATC	1 cut(s)	832
DpnII	GATC	1 cut(s)	830
DrdI	GACNNNNNNGTC	1 cut(s)	664
DseDI	GACNNNNNNGTC	1 cut(s)	664
Eam1104I	CTCTTC	2 cut(s)	187, 1094
EarI	CTCTTC	2 cut(s)	187, 1094
Eco130I	CCWWGG	1 cut(s)	873
Eco147I	AGGCCT	1 cut(s)	1060
Eco47I	GGWCC	2 cut(s)	217, 352
Eco57I	CTGAAG	3 cut(s)	168, 705, 996
Eco81I	CCTNAGG	1 cut(s)	406
Eco88I	CYCGRG	1 cut(s)	524
EcoO109I	RGGNCCY	1 cut(s)	217
EcoRI	GAATTC	2 cut(s)	190, 1192
EcoRII	CCWGG	3 cut(s)	20, 84, 895
EcoT14I	CCWWGG	1 cut(s)	873
ErhI	CCWWGG	1 cut(s)	873
Esp3I	CGTCTC	2 cut(s)	894, 1190
FalI	AAGNNNNNCTT	2 cut(s)	503, 535
FaqI	GGGAC	1 cut(s)	230
FblI	GTMKAC	2 cut(s)	36, 441
Fnu4HI	GCNGC	4 cut(s)	333, 627, 870, 1130
FokI	GGATG	6 cut(s)	17, 398, 556, 784, 879, 1163
Fsp4HI	GCNGC	4 cut(s)	333, 627, 870, 1130
FspBI	CTAG	1 cut(s)	1264
GlaI	GCGC	1 cut(s)	811
GluI	GCNGC	4 cut(s)	333, 627, 870, 1130
GsuI	CTGGAG	1 cut(s)	441
HaeIII	GGCC	2 cut(s)	562, 1060
HapII	CCGG	3 cut(s)	284, 525, 539
HgaI	GACGC	1 cut(s)	876
HhaI	GCGC	1 cut(s)	812
Hin6I	GCGC	1 cut(s)	810
HinP1I	GCGC	1 cut(s)	810
HincII	GTYRAC	1 cut(s)	727
HindII	GTYRAC	1 cut(s)	727
HindIII	AAGCTT	1 cut(s)	986
HinfI	GANTC	8 cut(s)	109, 317, 545, 794, 821, 911, 1244, 1258
HpaII	CCGG	3 cut(s)	284, 525, 539
HphI	GGTGA	3 cut(s)	337, 1028, 1215
Hpy166II	GTNNAC	7 cut(s)	37, 374, 442, 669, 727, 845, 853
Hpy188I	TCNGA	7 cut(s)	196, 322, 436, 550, 976, 1080, 1249
Hpy188III	TCNNGA	3 cut(s)	49, 1189, 1232
Hpy8I	GTNNAC	7 cut(s)	37, 374, 442, 669, 727, 845, 853
HpyAV	CCTTC	2 cut(s)	644, 971
HpyCH4III	ACNGT	3 cut(s)	94, 124, 1204
HpyCH4IV	ACGT	2 cut(s)	1023, 1183
HpyF10VI	GCNNNNNNNGC	2 cut(s)	425, 1047
HpyF3I	CTNAG	3 cut(s)	406, 930, 1187
HpySE526I	ACGT	2 cut(s)	1023, 1183
HspAI	GCGC	1 cut(s)	810
KflI	GGGWCCC	1 cut(s)	217
Kzo9I	GATC	1 cut(s)	830
LmnI	GCTCC	1 cut(s)	425
Lsp1109I	GCAGC	4 cut(s)	319, 638, 856, 1141
LweI	GCATC	3 cut(s)	613, 706, 821
MaeI	CTAG	1 cut(s)	1264
MaeII	ACGT	2 cut(s)	1023, 1183
MaeIII	GTNAC	3 cut(s)	16, 176, 1009
MalI	GATC	1 cut(s)	832
MboI	GATC	1 cut(s)	830
MboII	GAAGA	4 cut(s)	83, 86, 174, 1111
MflI	RGATCY	1 cut(s)	830
MlyI	GAGTC	1 cut(s)	905
MroXI	GAANNNNTTC	1 cut(s)	963
MseI	TTAA	4 cut(s)	138, 446, 474, 663
MslI	CAYNNNNRTG	1 cut(s)	384
MspA1I	CMGCKG	1 cut(s)	713
MspCI	CTTAAG	1 cut(s)	445
MspI	CCGG	3 cut(s)	284, 525, 539
MspR9I	CCNGG	5 cut(s)	22, 86, 525, 526, 897
Mva1269I	GAATGC	1 cut(s)	1087
MvaI	CCWGG	3 cut(s)	22, 86, 897
MwoI	GCNNNNNNNGC	2 cut(s)	425, 1047
NciI	CCSGG	2 cut(s)	525, 526
NdeII	GATC	1 cut(s)	830
NlaIV	GGNNCC	3 cut(s)	218, 219, 832
NmuCI	GTSAC	1 cut(s)	176
NspI	RCATGY	2 cut(s)	400, 432
PaeI	GCATGC	2 cut(s)	400, 432
PagI	TCATGA	1 cut(s)	1231
PceI	AGGCCT	1 cut(s)	1060
PctI	GAATGC	1 cut(s)	1087
PdmI	GAANNNNTTC	1 cut(s)	963
PfeI	GAWTC	7 cut(s)	109, 317, 545, 794, 821, 1244, 1258
PflFI	GACNNNGTC	1 cut(s)	92
PflMI	CCANNNNNTGG	1 cut(s)	212
PkrI	GCNGC	4 cut(s)	334, 628, 871, 1131
PleI	GAGTC	1 cut(s)	905
PpsI	GAGTC	1 cut(s)	905
PpuMI	RGGWCCY	1 cut(s)	217
Psp5II	RGGWCCY	1 cut(s)	217
Psp6I	CCWGG	3 cut(s)	20, 84, 895
PspGI	CCWGG	3 cut(s)	20, 84, 895
PspN4I	GGNNCC	3 cut(s)	218, 219, 832
PspPI	GGNCC	2 cut(s)	217, 352
PspPPI	RGGWCCY	1 cut(s)	217
PsuI	RGATCY	1 cut(s)	830
PsyI	GACNNNGTC	1 cut(s)	92
PvuII	CAGCTG	1 cut(s)	713
RsaI	GTAC	5 cut(s)	83, 117, 709, 852, 948
RsaNI	GTAC	5 cut(s)	82, 116, 708, 851, 947
RseI	CAYNNNNRTG	1 cut(s)	384
SaqAI	TTAA	4 cut(s)	138, 446, 474, 663
SatI	GCNGC	4 cut(s)	333, 627, 870, 1130
Sau3AI	GATC	1 cut(s)	830
Sau96I	GGNCC	2 cut(s)	217, 352
SchI	GAGTC	1 cut(s)	905
ScrFI	CCNGG	5 cut(s)	22, 86, 525, 526, 897
SfaNI	GCATC	3 cut(s)	613, 706, 821
SfcI	CTRYAG	1 cut(s)	222
SinI	GGWCC	2 cut(s)	217, 352
SmaI	CCCGGG	1 cut(s)	526
SmiMI	CAYNNNNRTG	1 cut(s)	384
SmlI	CTYRAG	2 cut(s)	445, 989
SmoI	CTYRAG	2 cut(s)	445, 989
SphI	GCATGC	2 cut(s)	400, 432
SseBI	AGGCCT	1 cut(s)	1060
SspI	AATATT	1 cut(s)	940
SspMI	CTAG	1 cut(s)	1264
StuI	AGGCCT	1 cut(s)	1060
StyD4I	CCNGG	5 cut(s)	20, 84, 523, 524, 895
StyI	CCWWGG	1 cut(s)	873
TaaI	ACNGT	3 cut(s)	94, 124, 1204
TaiI	ACGT	2 cut(s)	1026, 1186
TaqI	TCGA	2 cut(s)	48, 608
TatI	WGTACW	3 cut(s)	707, 850, 946
TfiI	GAWTC	7 cut(s)	109, 317, 545, 794, 821, 1244, 1258
Tru1I	TTAA	4 cut(s)	138, 446, 474, 663
Tru9I	TTAA	4 cut(s)	138, 446, 474, 663
TscAI	CASTG	2 cut(s)	192, 862
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	4 cut(s)	332, 626, 869, 1129
Tsp45I	GTSAC	1 cut(s)	176
TspGWI	ACGGA	2 cut(s)	359, 971
TspMI	CCCGGG	1 cut(s)	524
TspRI	CASTG	2 cut(s)	192, 862
Tth111I	GACNNNGTC	1 cut(s)	92
Van91I	CCANNNNNTGG	1 cut(s)	212
Vha464I	CTTAAG	1 cut(s)	445
VpaK11BI	GGWCC	2 cut(s)	217, 352
XapI	RAATTY	8 cut(s)	44, 98, 190, 583, 1074, 1165, 1192, 1235
XceI	RCATGY	2 cut(s)	400, 432
XmaI	CCCGGG	1 cut(s)	524
XmiI	GTMKAC	2 cut(s)	36, 441
XmnI	GAANNNNTTC	1 cut(s)	963
XspI	CTAG	1 cut(s)	1264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.