Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000449.1

Orthogroup ID

OG0004731

Physical Location & Seq

Genomic Coordinates Forward (+)

65034 .. 66750

Gene Structure 1717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000449.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

atggatgtcaaaggtataaactgggttgggtgtgtgtacgagaaatttgaatctatgtgcttggaggtggaagaaaatatgtaccaggacacagttaaatttgttgaagatcaggtacagactgttggggagagtgttaaaaagttctatgcagatataatgcaagatttgctctgtgactcttcattggatggagataatatatcagcttgtggttttcctattgaacatttttcagatgttgataattctaagaaatcaaagattagaaaaacgaaagaacatgtaaaggttggtgttgaagaagtaaatggggattcagaagtgatttctgttgtggagaaggatgtggaacatacaggattgttccatagacagcgcgtgtatgattcttgcacaagatcctcaggcgattgtgctaaagtagcatgctctgacttgtactcaagacaagaccatggcatgagaagctatatcaataaaaatttggttgtcaaacaaactcctatcaatgacagattgccaggggcaaatactgcggttggaaaagattttaacagagtatcactatcatgcagcgaattttcaaatgaaaaccatgacgcttcatgtgaccaaccagatgaagttataactcctacagtggaaggtatgagatgtgattccctgagggaaagatgtgtggttgcgaatgctagccaatgtacagatgatgtttcaattaactgccaatcatctgatttgattgttttggataaatctgatggaaaaagatggaatgaactgttagagtcatcgattggtgggttatcagctgaatcaaatggtggatctaataactccagtgtgcatggaacggaaatcagtcaacaatctgacaaggcaaagctcgaggaaacttgtgtgatggtcagtggtgaagaacttcattttgttcatcacatggtagccaactgtaagccttacaagaaaaaaattccaaaagccttcacttcaagaacgagttcagcaaggaaacaagaatatgagcagcttgcattatggcatgggcatcatacaaaatcatctttaggtggagaagattcaaagaaatccccgactcgtgatttttgcgaatctgaatgggagattctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

378

Amino Acids

42.14

Weight (kDa)

5.15

Isoelectric Point (pI)

46.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130
fragaria_vesca	FvH4_6g27121 FvH4_6g27121
malus_domestica	MD09G1239700.v1.1 MD17G1232800.v1.1
prunus_persica	Prupe.3G122900_v2.0.a1
pyrus_communis	pycom09g15830 pycom17g23540 pycom17g23560
rosa_chinensis	RchiOBHm_Chr2g0128471 RchiOBHm_Chr2g0128481 RchiOBHm_Chr2g0129081
rosa_laevigata	RLG00000019053
rosa_multiflora	Rmu_ssc0000449.1_g000008
rosa_roxburghii	Rroxscaffold_2G00114890
rosa_rugosa	Rorug02G0284300.1 Rorug02G0284400 Rorug02G0284500
rosa_samantha	Rh2AG336700 Rh2BG344700 Rh2CG324000 Rh2DG361600 Rh3BG289900 Rh5AG278500
rosa_wichuraiana	Rw2G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	632
AccII	CGCG	1 cut(s)	381
AciI	CCGC	1 cut(s)	539
AclWI	GGATC	2 cut(s)	396, 838
AcsI	RAATTY	5 cut(s)	44, 98, 484, 581, 975
AfaI	GTAC	5 cut(s)	38, 83, 117, 443, 706
AflIII	ACRYGT	1 cut(s)	283
AgsI	TTSAA	8 cut(s)	50, 107, 227, 302, 588, 720, 996, 1086
AjnI	CCWGG	2 cut(s)	84, 523
AluBI	AGCT	5 cut(s)	209, 471, 815, 889, 1033
AluI	AGCT	5 cut(s)	209, 471, 815, 889, 1033
AlwI	GGATC	2 cut(s)	396, 838
Ama87I	CYCGRG	1 cut(s)	890
ApeKI	GCWGC	2 cut(s)	576, 1030
ApoI	RAATTY	5 cut(s)	44, 98, 484, 581, 975
Asp700I	GAANNNNTTC	2 cut(s)	924, 1003
AspLEI	GCGC	1 cut(s)	381
AsuHPI	GGTGA	1 cut(s)	929
AsuNHI	GCTAGC	1 cut(s)	695
AvaI	CYCGRG	1 cut(s)	890
AxyI	CCTNAGG	2 cut(s)	406, 668
BarI	GAAGNNNNNNTAC	2 cut(s)	99, 131
BauI	CACGAG	1 cut(s)	1101
BbvI	GCAGC	2 cut(s)	588, 1042
BccI	CCATC	4 cut(s)	185, 758, 768, 901
BciT130I	CCWGG	2 cut(s)	86, 525
BfaI	CTAG	2 cut(s)	696, 1135
BfmI	CTRYAG	1 cut(s)	639
BisI	GCNGC	2 cut(s)	577, 1031
BlsI	GCNGC	2 cut(s)	578, 1032
Bme1390I	CCNGG	2 cut(s)	86, 525
BmeT110I	CYCGRG	1 cut(s)	890
BmrFI	CCNGG	2 cut(s)	86, 525
BmrI	ACTGGG	1 cut(s)	31
BmsI	GCATC	1 cut(s)	1060
BmtI	GCTAGC	1 cut(s)	699
BmuI	ACTGGG	1 cut(s)	31
BpmI	CTGGAG	1 cut(s)	826
BpuEI	CTTGAG	1 cut(s)	430
Bsa29I	ATCGAT	1 cut(s)	797
BsaJI	CCNNGG	2 cut(s)	457, 524
Bse1I	ACTGG	2 cut(s)	26, 843
Bse21I	CCTNAGG	2 cut(s)	406, 668
BseBI	CCWGG	2 cut(s)	86, 525
BseCI	ATCGAT	1 cut(s)	797
BseDI	CCNNGG	2 cut(s)	457, 524
BseGI	GGATG	3 cut(s)	10, 196, 352
BseMII	CTCAG	2 cut(s)	420, 659
BseNI	ACTGG	2 cut(s)	26, 843
BseXI	GCAGC	2 cut(s)	588, 1042
Bsh1236I	CGCG	1 cut(s)	381
BshVI	ATCGAT	1 cut(s)	797
BsiHKCI	CYCGRG	1 cut(s)	890
BsmI	GAATGC	1 cut(s)	697
BsoBI	CYCGRG	1 cut(s)	890
Bsp1407I	TGTACA	1 cut(s)	704
Bsp143I	GATC	3 cut(s)	109, 401, 830
Bsp19I	CCATGG	1 cut(s)	457
BspACI	CCGC	1 cut(s)	539
BspCNI	CTCAG	2 cut(s)	419, 660
BspDI	ATCGAT	1 cut(s)	797
BspFNI	CGCG	1 cut(s)	381
BspOI	GCTAGC	1 cut(s)	699
BspPI	GGATC	2 cut(s)	396, 838
BsrGI	TGTACA	1 cut(s)	704
BsrI	ACTGG	2 cut(s)	26, 843
BssECI	CCNNGG	2 cut(s)	457, 524
BssMI	GATC	3 cut(s)	109, 401, 830
BssSI	CACGAG	1 cut(s)	1101
BssT1I	CCWWGG	1 cut(s)	457
Bst2BI	CACGAG	1 cut(s)	1101
Bst2UI	CCWGG	2 cut(s)	86, 525
Bst4CI	ACNGT	5 cut(s)	94, 124, 643, 786, 956
Bst6I	CTCTTC	1 cut(s)	187
BstAPI	GCANNNNNTGC	2 cut(s)	169, 536
BstAUI	TGTACA	1 cut(s)	704
BstC8I	GCNNGC	3 cut(s)	430, 697, 1035
BstDEI	CTNAG	3 cut(s)	252, 406, 668
BstDSI	CCRYGG	1 cut(s)	457
BstF5I	GGATG	3 cut(s)	10, 196, 352
BstFNI	CGCG	1 cut(s)	381
BstHHI	GCGC	1 cut(s)	381
BstKTI	GATC	3 cut(s)	112, 404, 833
BstMBI	GATC	3 cut(s)	109, 401, 830
BstMWI	GCNNNNNNNGC	4 cut(s)	169, 425, 468, 536
BstNI	CCWGG	2 cut(s)	86, 525
BstNSI	RCATGY	2 cut(s)	287, 432
BstSCI	CCNGG	2 cut(s)	84, 523
BstSFI	CTRYAG	1 cut(s)	639
BstUI	CGCG	1 cut(s)	381
BstV1I	GCAGC	2 cut(s)	588, 1042
BstX2I	RGATCY	2 cut(s)	401, 830
BstYI	RGATCY	2 cut(s)	401, 830
Bsu15I	ATCGAT	1 cut(s)	797
Bsu36I	CCTNAGG	2 cut(s)	406, 668
BsuTUI	ATCGAT	1 cut(s)	797
BtgI	CCRYGG	1 cut(s)	457
BtsCI	GGATG	3 cut(s)	10, 196, 352
BtsIMutI	CAGTG	3 cut(s)	648, 850, 919
Cac8I	GCNNGC	3 cut(s)	430, 697, 1035
CfoI	GCGC	1 cut(s)	381
ClaI	ATCGAT	1 cut(s)	797
CseI	GACGC	1 cut(s)	611
Csp6I	GTAC	5 cut(s)	37, 82, 116, 442, 705
CviJI	RGCY	9 cut(s)	209, 471, 699, 815, 889, 950, 961, 986, 1033
CviKI_1	RGCY	9 cut(s)	209, 471, 699, 815, 889, 950, 961, 986, 1033
CviQI	GTAC	5 cut(s)	37, 82, 116, 442, 705
DdeI	CTNAG	3 cut(s)	252, 406, 668
DpnI	GATC	3 cut(s)	111, 403, 832
DpnII	GATC	3 cut(s)	109, 401, 830
Eam1104I	CTCTTC	1 cut(s)	187
EarI	CTCTTC	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	457
Eco81I	CCTNAGG	2 cut(s)	406, 668
Eco88I	CYCGRG	1 cut(s)	890
EcoRII	CCWGG	2 cut(s)	84, 523
EcoT14I	CCWWGG	1 cut(s)	457
ErhI	CCWWGG	1 cut(s)	457
Fnu4HI	GCNGC	2 cut(s)	577, 1031
FokI	GGATG	3 cut(s)	17, 203, 359
Fsp4HI	GCNGC	2 cut(s)	577, 1031
FspBI	CTAG	2 cut(s)	696, 1135
GlaI	GCGC	1 cut(s)	380
GluI	GCNGC	2 cut(s)	577, 1031
GsuI	CTGGAG	1 cut(s)	826
HgaI	GACGC	1 cut(s)	611
HhaI	GCGC	1 cut(s)	381
Hin6I	GCGC	1 cut(s)	379
HinP1I	GCGC	1 cut(s)	379
HincII	GTYRAC	1 cut(s)	869
HindII	GTYRAC	1 cut(s)	869
HphI	GGTGA	1 cut(s)	929
Hpy166II	GTNNAC	2 cut(s)	37, 869
Hpy188I	TCNGA	7 cut(s)	238, 322, 436, 739, 763, 877, 1120
Hpy188III	TCNNGA	3 cut(s)	447, 996, 1103
Hpy8I	GTNNAC	2 cut(s)	37, 869
HpyAV	CCTTC	3 cut(s)	337, 641, 997
HpyCH4III	ACNGT	5 cut(s)	94, 124, 643, 786, 956
HpyCH4V	TGCA	6 cut(s)	152, 163, 396, 576, 850, 1037
HpyF10VI	GCNNNNNNNGC	4 cut(s)	169, 425, 468, 536
HpyF3I	CTNAG	3 cut(s)	252, 406, 668
HspAI	GCGC	1 cut(s)	379
Kzo9I	GATC	3 cut(s)	109, 401, 830
Lsp1109I	GCAGC	2 cut(s)	588, 1042
LweI	GCATC	1 cut(s)	1060
MaeI	CTAG	2 cut(s)	696, 1135
MaeIII	GTNAC	2 cut(s)	176, 611
MalI	GATC	3 cut(s)	111, 403, 832
MboI	GATC	3 cut(s)	109, 401, 830
MboII	GAAGA	6 cut(s)	83, 119, 174, 314, 932, 1091
MflI	RGATCY	2 cut(s)	401, 830
MluCI	AATT	7 cut(s)	44, 98, 247, 484, 581, 720, 975
MlyI	GAGTC	3 cut(s)	173, 800, 1093
MmeI	TCCRAC	1 cut(s)	523
MnlI	CCTC	4 cut(s)	58, 415, 663, 886
MroXI	GAANNNNTTC	2 cut(s)	924, 1003
MseI	TTAA	4 cut(s)	96, 138, 555, 723
MslI	CAYNNNNRTG	1 cut(s)	571
MspA1I	CMGCKG	1 cut(s)	815
MspR9I	CCNGG	2 cut(s)	86, 525
Mva1269I	GAATGC	1 cut(s)	697
MvaI	CCWGG	2 cut(s)	86, 525
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	4 cut(s)	169, 425, 468, 536
NcoI	CCATGG	1 cut(s)	457
NdeII	GATC	3 cut(s)	109, 401, 830
NheI	GCTAGC	1 cut(s)	695
NmuCI	GTSAC	2 cut(s)	176, 611
NspI	RCATGY	2 cut(s)	287, 432
PaeI	GCATGC	1 cut(s)	432
PaeR7I	CTCGAG	1 cut(s)	890
PciI	ACATGT	1 cut(s)	283
PctI	GAATGC	1 cut(s)	697
PdmI	GAANNNNTTC	2 cut(s)	924, 1003
PfeI	GAWTC	8 cut(s)	50, 317, 389, 662, 818, 1082, 1115, 1129
PkrI	GCNGC	2 cut(s)	578, 1032
PleI	GAGTC	3 cut(s)	173, 799, 1093
PpsI	GAGTC	3 cut(s)	173, 799, 1093
PscI	ACATGT	1 cut(s)	283
PsiI	TTATAA	1 cut(s)	632
Psp6I	CCWGG	2 cut(s)	84, 523
PspGI	CCWGG	2 cut(s)	84, 523
PspXI	VCTCGAGB	1 cut(s)	890
PsuI	RGATCY	2 cut(s)	401, 830
PvuII	CAGCTG	1 cut(s)	815
RsaI	GTAC	5 cut(s)	38, 83, 117, 443, 706
RsaNI	GTAC	5 cut(s)	37, 82, 116, 442, 705
RseI	CAYNNNNRTG	1 cut(s)	571
SaqAI	TTAA	4 cut(s)	96, 138, 555, 723
SatI	GCNGC	2 cut(s)	577, 1031
Sau3AI	GATC	3 cut(s)	109, 401, 830
SchI	GAGTC	3 cut(s)	173, 800, 1093
ScrFI	CCNGG	2 cut(s)	86, 525
SfaNI	GCATC	1 cut(s)	1060
SfcI	CTRYAG	1 cut(s)	639
Sfr274I	CTCGAG	1 cut(s)	890
SlaI	CTCGAG	1 cut(s)	890
SmiMI	CAYNNNNRTG	1 cut(s)	571
SmlI	CTYRAG	2 cut(s)	445, 890
SmoI	CTYRAG	2 cut(s)	445, 890
SphI	GCATGC	1 cut(s)	432
Sse9I	AATT	7 cut(s)	44, 98, 247, 484, 581, 720, 975
SsiI	CCGC	1 cut(s)	539
SspMI	CTAG	2 cut(s)	696, 1135
StyD4I	CCNGG	2 cut(s)	84, 523
StyI	CCWWGG	1 cut(s)	457
TaaI	ACNGT	5 cut(s)	94, 124, 643, 786, 956
TaqI	TCGA	2 cut(s)	797, 891
TasI	AATT	7 cut(s)	44, 98, 247, 484, 581, 720, 975
TatI	WGTACW	2 cut(s)	441, 704
TfiI	GAWTC	8 cut(s)	50, 317, 389, 662, 818, 1082, 1115, 1129
Tru1I	TTAA	4 cut(s)	96, 138, 555, 723
Tru9I	TTAA	4 cut(s)	96, 138, 555, 723
TscAI	CASTG	3 cut(s)	648, 850, 919
TseFI	GTSAC	2 cut(s)	176, 611
TseI	GCWGC	2 cut(s)	576, 1030
Tsp45I	GTSAC	2 cut(s)	176, 611
TspDTI	ATGAA	7 cut(s)	174, 597, 606, 639, 795, 917, 926
TspGWI	ACGGA	1 cut(s)	872
TspRI	CASTG	3 cut(s)	648, 850, 919
XapI	RAATTY	5 cut(s)	44, 98, 484, 581, 975
XceI	RCATGY	2 cut(s)	287, 432
XhoI	CTCGAG	1 cut(s)	890
XmnI	GAANNNNTTC	2 cut(s)	924, 1003
XspI	CTAG	2 cut(s)	696, 1135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.