Rorug02G0284500

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004731
Physical Location & Seq
Reverse (-)
30959258 .. 30962493
3236 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0284500.1

Sequence Viewer

Length: 681 bp
ATGGCAGCTTTGCCGTTGCATATATTTGGGAAGTGTGCTACGGCAATTAAATGGGGTAGCAAGATTAAGGGTGGACACGACGTCGTATTCCGATTGGGCTCCGACATCGTTTTGGTTCCTCTAAATCTTTATTTGCTTCGCACTCAGTTGGATCTCGAGATACTTCGCATTGTTTTCAGGGTTTGTGATTACACTATTTCGAAACCCATCTTGATTACCCGTTTTCCGGCCAAAGGTCGACGAGATCTCTCTCCTCTCCGTCAACTCCTCCTTCTTCGCTCCGACAAAATTGATCACCCTGTGAGTATAGCTATTTACTTCTTGTTGCCAACTAGGAATGTTTCAAGCCTTCATCGCATACTGTATGCAGAAACATGGCATTTCTACCTGGGAGAACCTCTTACGAGAGCTGTCCATGCCCTCATATGCCCTGCTTTGGTCCAGGCAGAAATGTTGTTCAAGAAACTTTGCTTTAAGTTTCTTGCTTTTTCTCATTTTCACTTCACTGTAGAACCTGTATGCTTCTCAATCATAAGTTTTATCTATGGTTACAAAAACGACTTACTTAGAAGATTACCTTTTCAACTAACCCAACCTTGTTTCTTTTCAGCTTCAAAGGGGGTGGATTTTGCTTCTCAAGATAAGGCGAGGCCTAGACTTGCTTCTAAGAAGGCAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

25.86

Weight (kDa)

9.89

Isoelectric Point (pI)

37.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_5 PF06172 96 - 136 1.5e-07 Cupin superfamily (DUF985)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 84
AccI GTMKAC 1 cut(s) 238
AclWI GGATC 1 cut(s) 159
AcoI YGGCCR 1 cut(s) 228
AcyI GRCGYC 1 cut(s) 81
AdeI CACNNNGTG 1 cut(s) 301
AfiI CCNNNNNNNGG 3 cut(s) 226, 233, 436
AgsI TTSAA 4 cut(s) 345, 460, 584, 615
AhdI GACNNNNNGTC 1 cut(s) 80
AjnI CCWGG 2 cut(s) 387, 441
AluBI AGCT 4 cut(s) 8, 311, 410, 611
AluI AGCT 4 cut(s) 8, 311, 410, 611
AlwI GGATC 1 cut(s) 159
Ama87I CYCGRG 1 cut(s) 155
AoxI GGCC 2 cut(s) 228, 650
ApeKI GCWGC 1 cut(s) 5
AspS9I GGNCC 1 cut(s) 439
AsuHPI GGTGA 1 cut(s) 287
AsuII TTCGAA 1 cut(s) 200
AvaI CYCGRG 1 cut(s) 155
AvaII GGWCC 1 cut(s) 439
BanII GRGCYC 1 cut(s) 101
BbvI GCAGC 1 cut(s) 17
BccI CCATC 1 cut(s) 215
BceAI ACGGC 1 cut(s) 57
BciT130I CCWGG 2 cut(s) 389, 443
BclI TGATCA 1 cut(s) 292
BfaI CTAG 2 cut(s) 333, 654
BfmI CTRYAG 1 cut(s) 507
BglII AGATCT 1 cut(s) 244
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 2 cut(s) 389, 443
Bme18I GGWCC 1 cut(s) 439
BmeRI GACNNNNNGTC 1 cut(s) 80
BmeT110I CYCGRG 1 cut(s) 155
BmgT120I GGNCC 1 cut(s) 439
BmiI GGNNCC 2 cut(s) 100, 117
BmrFI CCNGG 2 cut(s) 389, 443
Bpu14I TTCGAA 1 cut(s) 200
BpuEI CTTGAG 1 cut(s) 621
BsaHI GRCGYC 1 cut(s) 81
BsaJI CCNNGG 1 cut(s) 388
Bsc4I CCNNNNNNNGG 3 cut(s) 226, 233, 436
BseBI CCWGG 2 cut(s) 389, 443
BseDI CCNNGG 1 cut(s) 388
BseLI CCNNNNNNNGG 3 cut(s) 226, 233, 436
BseMII CTCAG 1 cut(s) 158
BseRI GAGGAG 2 cut(s) 243, 257
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 2 cut(s) 230, 652
BsiHKCI CYCGRG 1 cut(s) 155
BsiSI CCGG 1 cut(s) 227
BslI CCNNNNNNNGG 3 cut(s) 226, 233, 436
BsnI GGCC 2 cut(s) 230, 652
BsoBI CYCGRG 1 cut(s) 155
Bsp119I TTCGAA 1 cut(s) 200
Bsp1286I GDGCHC 1 cut(s) 101
Bsp143I GATC 3 cut(s) 151, 244, 292
BspANI GGCC 2 cut(s) 230, 652
BspCNI CTCAG 1 cut(s) 157
BspLI GGNNCC 2 cut(s) 100, 117
BspPI GGATC 1 cut(s) 159
BspT104I TTCGAA 1 cut(s) 200
BssECI CCNNGG 1 cut(s) 388
BssMI GATC 3 cut(s) 151, 244, 292
BssNI GRCGYC 1 cut(s) 81
Bst2UI CCWGG 2 cut(s) 389, 443
Bst4CI ACNGT 2 cut(s) 363, 508
BstACI GRCGYC 1 cut(s) 81
BstBI TTCGAA 1 cut(s) 200
BstDEI CTNAG 3 cut(s) 144, 566, 666
BstKTI GATC 3 cut(s) 154, 247, 295
BstMBI GATC 3 cut(s) 151, 244, 292
BstMWI GCNNNNNNNGC 2 cut(s) 354, 416
BstNI CCWGG 2 cut(s) 389, 443
BstSCI CCNGG 2 cut(s) 387, 441
BstSFI CTRYAG 1 cut(s) 507
BstV1I GCAGC 1 cut(s) 17
BstX2I RGATCY 2 cut(s) 151, 244
BstYI RGATCY 2 cut(s) 151, 244
BsuRI GGCC 2 cut(s) 230, 652
BtgZI GCGATG 1 cut(s) 338
BtsIMutI CAGTG 1 cut(s) 504
Cfr13I GGNCC 1 cut(s) 439
CspCI CAANNNNNGTGG 2 cut(s) 603, 638
CviAII CATG 2 cut(s) 375, 416
CviJI RGCY 8 cut(s) 8, 99, 230, 311, 348, 410, 611, 652
CviKI_1 RGCY 8 cut(s) 8, 99, 230, 311, 348, 410, 611, 652
DdeI CTNAG 3 cut(s) 144, 566, 666
DpnI GATC 3 cut(s) 153, 246, 294
DpnII GATC 3 cut(s) 151, 244, 292
DraIII CACNNNGTG 1 cut(s) 301
DriI GACNNNNNGTC 1 cut(s) 80
EaeI YGGCCR 1 cut(s) 228
Eam1105I GACNNNNNGTC 1 cut(s) 80
Eco147I AGGCCT 1 cut(s) 652
Eco24I GRGCYC 1 cut(s) 101
Eco47I GGWCC 1 cut(s) 439
Eco88I CYCGRG 1 cut(s) 155
EcoRII CCWGG 2 cut(s) 387, 441
EcoT38I GRGCYC 1 cut(s) 101
FaeI CATG 2 cut(s) 378, 419
FalI AAGNNNNNCTT 2 cut(s) 562, 594
FatI CATG 2 cut(s) 374, 415
FauNDI CATATG 1 cut(s) 425
FbaI TGATCA 1 cut(s) 292
FblI GTMKAC 1 cut(s) 238
Fnu4HI GCNGC 1 cut(s) 6
FriOI GRGCYC 1 cut(s) 101
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 2 cut(s) 333, 654
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 2 cut(s) 230, 652
HapII CCGG 1 cut(s) 227
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 2 cut(s) 378, 419
HincII GTYRAC 2 cut(s) 239, 263
HindII GTYRAC 2 cut(s) 239, 263
HpaII CCGG 1 cut(s) 227
HphI GGTGA 1 cut(s) 287
Hpy166II GTNNAC 3 cut(s) 74, 239, 263
Hpy188I TCNGA 3 cut(s) 92, 103, 283
Hpy188III TCNNGA 5 cut(s) 155, 157, 211, 460, 638
Hpy8I GTNNAC 3 cut(s) 74, 239, 263
Hpy99I CGWCG 3 cut(s) 83, 86, 243
HpyAV CCTTC 3 cut(s) 281, 359, 664
HpyCH4III ACNGT 2 cut(s) 363, 508
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 2 cut(s) 19, 368
HpyF10VI GCNNNNNNNGC 2 cut(s) 354, 416
HpyF3I CTNAG 3 cut(s) 144, 566, 666
HpySE526I ACGT 1 cut(s) 81
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 2 cut(s) 378, 419
Ksp22I TGATCA 1 cut(s) 292
Kzo9I GATC 3 cut(s) 151, 244, 292
LmnI GCTCC 2 cut(s) 104, 284
LpnPI CCDG 9 cut(s) 163, 240, 312, 374, 401, 428, 444, 455, 528
Lsp1109I GCAGC 1 cut(s) 17
MaeI CTAG 2 cut(s) 333, 654
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 548
MalI GATC 3 cut(s) 153, 246, 294
MboI GATC 3 cut(s) 151, 244, 292
MboII GAAGA 2 cut(s) 266, 582
MflI RGATCY 2 cut(s) 151, 244
MhlI GDGCHC 1 cut(s) 101
MluCI AATT 2 cut(s) 45, 288
MmeI TCCRAC 3 cut(s) 126, 129, 306
MnlI CCTC 6 cut(s) 129, 264, 278, 408, 431, 642
MseI TTAA 3 cut(s) 48, 66, 474
MspI CCGG 1 cut(s) 227
MspR9I CCNGG 2 cut(s) 389, 443
MvaI CCWGG 2 cut(s) 389, 443
MwoI GCNNNNNNNGC 2 cut(s) 354, 416
NdeI CATATG 1 cut(s) 425
NdeII GATC 3 cut(s) 151, 244, 292
NlaIII CATG 2 cut(s) 378, 419
NlaIV GGNNCC 2 cut(s) 100, 117
NspV TTCGAA 1 cut(s) 200
PaeR7I CTCGAG 1 cut(s) 155
PceI AGGCCT 1 cut(s) 652
PkrI GCNGC 1 cut(s) 7
Psp6I CCWGG 2 cut(s) 387, 441
PspGI CCWGG 2 cut(s) 387, 441
PspN4I GGNNCC 2 cut(s) 100, 117
PspPI GGNCC 1 cut(s) 439
PsuI RGATCY 2 cut(s) 151, 244
SalI GTCGAC 1 cut(s) 237
SaqAI TTAA 3 cut(s) 48, 66, 474
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 3 cut(s) 151, 244, 292
Sau96I GGNCC 1 cut(s) 439
ScrFI CCNGG 2 cut(s) 389, 443
SduI GDGCHC 1 cut(s) 101
SfcI CTRYAG 1 cut(s) 507
Sfr274I CTCGAG 1 cut(s) 155
SfuI TTCGAA 1 cut(s) 200
SinI GGWCC 1 cut(s) 439
SlaI CTCGAG 1 cut(s) 155
SmlI CTYRAG 2 cut(s) 155, 636
SmoI CTYRAG 2 cut(s) 155, 636
Sse9I AATT 2 cut(s) 45, 288
SseBI AGGCCT 1 cut(s) 652
SspMI CTAG 2 cut(s) 333, 654
StuI AGGCCT 1 cut(s) 652
StyD4I CCNGG 2 cut(s) 387, 441
TaaI ACNGT 2 cut(s) 363, 508
TaiI ACGT 1 cut(s) 84
TaqI TCGA 3 cut(s) 156, 200, 238
TasI AATT 2 cut(s) 45, 288
Tru1I TTAA 3 cut(s) 48, 66, 474
Tru9I TTAA 3 cut(s) 48, 66, 474
TscAI CASTG 1 cut(s) 511
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 341
TspGWI ACGGA 1 cut(s) 248
TspRI CASTG 1 cut(s) 511
VpaK11BI GGWCC 1 cut(s) 439
XhoI CTCGAG 1 cut(s) 155
XmiI GTMKAC 1 cut(s) 238
XspI CTAG 2 cut(s) 333, 654
ZraI GACGTC 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.