Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004731

Physical Location & Seq

Genomic Coordinates Reverse (-)

30958277 .. 30959225

Gene Structure 949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0284400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGTCCACAAATCTCACAGTTTATGTTTTTGCTGCTAAGGTTTGGAATTCTCAGCAGTATATATTATGGGTTGGCATCAAGCACTTAGATTTTAGCTTAGTTTTCAAGTATTCATGGTCCACAATGCATGTTCAGTTGCTACCTTGCCAGTATTCATCAAGTTTTATCGCTTCACATACAATTGAGAATCAGGACTCTTATGATGATCTATTTAAAGAGCTGAGCAAGTACAGACAGATCATTCTCAGGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

84

Amino Acids

9.99

Weight (kDa)

7.88

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130
fragaria_vesca	FvH4_6g27121 FvH4_6g27121
malus_domestica	MD09G1239700.v1.1 MD17G1232800.v1.1
prunus_persica	Prupe.3G122900_v2.0.a1
pyrus_communis	pycom09g15830 pycom17g23540 pycom17g23560
rosa_chinensis	RchiOBHm_Chr2g0128471 RchiOBHm_Chr2g0128481 RchiOBHm_Chr2g0129081
rosa_laevigata	RLG00000019053
rosa_multiflora	Rmu_ssc0000449.1_g000008
rosa_roxburghii	Rroxscaffold_2G00114890
rosa_rugosa	Rorug02G0284300.1 Rorug02G0284400 Rorug02G0284500
rosa_samantha	Rh2AG336700 Rh2BG344700 Rh2CG324000 Rh2DG361600 Rh3BG289900 Rh5AG278500
rosa_wichuraiana	Rw2G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	46
AfaI	GTAC	1 cut(s)	230
AgsI	TTSAA	1 cut(s)	106
AluBI	AGCT	2 cut(s)	96, 220
AluI	AGCT	2 cut(s)	96, 220
ApeKI	GCWGC	1 cut(s)	32
ApoI	RAATTY	1 cut(s)	46
AspS9I	GGNCC	1 cut(s)	117
AvaII	GGWCC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	19
BisI	GCNGC	1 cut(s)	33
BlpI	GCTNAGC	1 cut(s)	221
BlsI	GCNGC	1 cut(s)	34
Bme18I	GGWCC	1 cut(s)	117
BmgT120I	GGNCC	1 cut(s)	117
BmsI	GCATC	1 cut(s)	84
Bpu10I	CCTNAGC	1 cut(s)	36
Bpu1102I	GCTNAGC	1 cut(s)	221
Bse1I	ACTGG	1 cut(s)	148
BseMII	CTCAG	2 cut(s)	65, 212
BseNI	ACTGG	1 cut(s)	148
BseXI	GCAGC	1 cut(s)	19
Bsp143I	GATC	2 cut(s)	205, 237
Bsp1720I	GCTNAGC	1 cut(s)	221
BspCNI	CTCAG	2 cut(s)	64, 213
BsrI	ACTGG	1 cut(s)	148
BssMI	GATC	2 cut(s)	205, 237
Bst4CI	ACNGT	1 cut(s)	19
BstDEI	CTNAG	6 cut(s)	36, 51, 85, 97, 221, 245
BstKTI	GATC	2 cut(s)	208, 240
BstMBI	GATC	2 cut(s)	205, 237
BstNSI	RCATGY	1 cut(s)	131
BstV1I	GCAGC	1 cut(s)	19
Cfr13I	GGNCC	1 cut(s)	117
Csp6I	GTAC	1 cut(s)	229
CviAII	CATG	2 cut(s)	114, 128
CviJI	RGCY	3 cut(s)	96, 220, 250
CviKI_1	RGCY	3 cut(s)	96, 220, 250
CviQI	GTAC	1 cut(s)	229
DdeI	CTNAG	6 cut(s)	36, 51, 85, 97, 221, 245
DpnI	GATC	2 cut(s)	207, 239
DpnII	GATC	2 cut(s)	205, 237
DraI	TTTAAA	1 cut(s)	214
Eco47I	GGWCC	1 cut(s)	117
EcoRI	GAATTC	1 cut(s)	46
EcoT22I	ATGCAT	1 cut(s)	129
FaeI	CATG	2 cut(s)	117, 131
FaiI	YATR	9 cut(s)	24, 60, 62, 67, 115, 129, 177, 201, 253
FatI	CATG	2 cut(s)	113, 127
Fnu4HI	GCNGC	1 cut(s)	33
Fsp4HI	GCNGC	1 cut(s)	33
GluI	GCNGC	1 cut(s)	33
Hin1II	CATG	2 cut(s)	117, 131
HinfI	GANTC	2 cut(s)	187, 194
Hpy166II	GTNNAC	2 cut(s)	6, 120
Hpy188III	TCNNGA	1 cut(s)	191
Hpy8I	GTNNAC	2 cut(s)	6, 120
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4V	TGCA	1 cut(s)	127
HpyF3I	CTNAG	6 cut(s)	36, 51, 85, 97, 221, 245
Hsp92II	CATG	2 cut(s)	117, 131
Kzo9I	GATC	2 cut(s)	205, 237
LpnPI	CCDG	3 cut(s)	161, 176, 232
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	1 cut(s)	84
MalI	GATC	2 cut(s)	207, 239
MboI	GATC	2 cut(s)	205, 237
MfeI	CAATTG	1 cut(s)	180
MluCI	AATT	2 cut(s)	46, 180
MlyI	GAGTC	1 cut(s)	188
Mph1103I	ATGCAT	1 cut(s)	129
MseI	TTAA	1 cut(s)	213
MunI	CAATTG	1 cut(s)	180
NdeII	GATC	2 cut(s)	205, 237
NlaIII	CATG	2 cut(s)	117, 131
NsiI	ATGCAT	1 cut(s)	129
NspI	RCATGY	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	187
PkrI	GCNGC	1 cut(s)	34
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
PspPI	GGNCC	1 cut(s)	117
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	2 cut(s)	205, 237
Sau96I	GGNCC	1 cut(s)	117
SchI	GAGTC	1 cut(s)	188
SetI	ASST	4 cut(s)	42, 98, 145, 222
SfaNI	GCATC	1 cut(s)	84
SgeI	CNNG	9 cut(s)	91, 118, 126, 140, 156, 160, 171, 203, 238
SinI	GGWCC	1 cut(s)	117
Sse9I	AATT	2 cut(s)	46, 180
TaaI	ACNGT	1 cut(s)	19
TasI	AATT	2 cut(s)	46, 180
TatI	WGTACW	1 cut(s)	228
TfiI	GAWTC	1 cut(s)	187
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TseI	GCWGC	1 cut(s)	32
TspDTI	ATGAA	2 cut(s)	102, 144
VpaK11BI	GGWCC	1 cut(s)	117
XapI	RAATTY	1 cut(s)	46
XceI	RCATGY	1 cut(s)	131
Zsp2I	ATGCAT	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.