AT2G32500

Stress responsive A/B Barrel Domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010456
Physical Location & Seq
Reverse (-)
13795244 .. 13797237
1994 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G32500.2

Sequence Viewer

Length: 666 bp
ATGATCCATCAAGCTTTAGCTCTCCCTCGTCCTATTCTCACCAGAGGATTTGTGTCTAATGGTGGCGGTATGTTTGTCCATCAATGTCGAACAAAAACCCCTAGGGTTACATTTTGCGCTGCTGATGATCAGATAGCCAGTTCCAAGTCGAACAAGACAAGGAAAGTAGTGGAGCATGTGTGTTTACTCAAAGCAAAAGAGGGTTTATCTGAGGAAGTAGAAAAAGATATGCTTGACTATCTTTACACAACTCAATACCAAATGAGAGGCATTGTTGCTATATCTGTTGGTTGTATCGGTGATAGAAACAATGAATATTTCACGCACGCTCTCTACATGCGATTCCAAAAGAAGGAAGACCTTGACAAGTTCTATGAGAACCCTTTCTTCTTGAAAGTTCTCAATGAATATGTTACACCATTCTGCCATGGGCTAACTAATGTGGACTATGAATCAGAGGTTGAAGATGACATCCTTGCAATATTTAGAAAGGGGGAGGAGTACAACTATGGCGAAGAGTTTGTTCTTCTGATCACTTTTGCTAAGAGCGCTTCCGAGAAGAACACTAAAGATGCAATGGATTCTTTTGCTCAGCTAACTTCATCTCTTCCATCATTAATTGTCCAGTCCACACAAGGTGCCTATGTTTCTGACATCCATATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dabb

Protein Analysis

221

Amino Acids

25.13

Weight (kDa)

5.55

Isoelectric Point (pI)

29.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dabb PF07876 57 - 151 1.8e-10 Stress responsive A/B Barrel Domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 638
AciI CCGC 1 cut(s) 66
AdeI CACNNNGTG 1 cut(s) 638
AfaI GTAC 1 cut(s) 503
AfeI AGCGCT 1 cut(s) 550
AfiI CCNNNNNNNGG 1 cut(s) 352
AgsI TTSAA 2 cut(s) 394, 464
AluBI AGCT 3 cut(s) 14, 20, 595
AluI AGCT 3 cut(s) 14, 20, 595
Aor51HI AGCGCT 1 cut(s) 550
ApeKI GCWGC 1 cut(s) 119
AseI ATTAAT 1 cut(s) 617
Asp700I GAANNNNTTC 1 cut(s) 383
AspA2I CCTAGG 1 cut(s) 101
AspLEI GCGC 2 cut(s) 119, 551
AsuHPI GGTGA 2 cut(s) 31, 311
AvrII CCTAGG 1 cut(s) 101
BanI GGYRCC 1 cut(s) 638
BbsI GAAGAC 1 cut(s) 363
BbvI GCAGC 1 cut(s) 106
BccI CCATC 3 cut(s) 15, 87, 619
BclI TGATCA 2 cut(s) 127, 531
BfaI CTAG 1 cut(s) 102
BfoI RGCGCY 1 cut(s) 552
BisI GCNGC 1 cut(s) 120
BlnI CCTAGG 1 cut(s) 101
BlpI GCTNAGC 1 cut(s) 591
BlsI GCNGC 1 cut(s) 121
BmiI GGNNCC 1 cut(s) 640
BmsI GCATC 1 cut(s) 562
BpiI GAAGAC 1 cut(s) 363
Bpu1102I GCTNAGC 1 cut(s) 591
BsaJI CCNNGG 2 cut(s) 101, 427
BsaXI ACNNNNNCTCC 2 cut(s) 164, 194
Bsc4I CCNNNNNNNGG 1 cut(s) 352
Bse1I ACTGG 2 cut(s) 138, 625
Bse3DI GCAATG 1 cut(s) 582
BseDI CCNNGG 2 cut(s) 101, 427
BseGI GGATG 2 cut(s) 471, 654
BseLI CCNNNNNNNGG 1 cut(s) 352
BseMI GCAATG 1 cut(s) 582
BseMII CTCAG 2 cut(s) 201, 605
BseNI ACTGG 2 cut(s) 138, 625
BseRI GAGGAG 1 cut(s) 512
BseXI GCAGC 1 cut(s) 106
BshNI GGYRCC 1 cut(s) 638
BslI CCNNNNNNNGG 1 cut(s) 352
Bsp143I GATC 3 cut(s) 3, 127, 531
Bsp1720I GCTNAGC 1 cut(s) 591
Bsp19I CCATGG 1 cut(s) 427
BspACI CCGC 1 cut(s) 66
BspCNI CTCAG 2 cut(s) 202, 604
BspLI GGNNCC 1 cut(s) 640
BspT107I GGYRCC 1 cut(s) 638
BsrDI GCAATG 1 cut(s) 582
BsrI ACTGG 2 cut(s) 138, 625
BssECI CCNNGG 2 cut(s) 101, 427
BssMI GATC 3 cut(s) 3, 127, 531
BssT1I CCWWGG 2 cut(s) 101, 427
Bst6I CTCTTC 2 cut(s) 510, 612
BstC8I GCNNGC 1 cut(s) 327
BstDEI CTNAG 3 cut(s) 210, 543, 591
BstDSI CCRYGG 1 cut(s) 427
BstF5I GGATG 2 cut(s) 471, 654
BstH2I RGCGCY 1 cut(s) 552
BstHHI GCGC 2 cut(s) 119, 551
BstKTI GATC 3 cut(s) 6, 130, 534
BstMBI GATC 3 cut(s) 3, 127, 531
BstMWI GCNNNNNNNGC 1 cut(s) 548
BstNSI RCATGY 2 cut(s) 179, 340
BstV1I GCAGC 1 cut(s) 106
BstV2I GAAGAC 1 cut(s) 363
BtgI CCRYGG 1 cut(s) 427
BtsCI GGATG 2 cut(s) 471, 654
Cac8I GCNNGC 1 cut(s) 327
CfoI GCGC 2 cut(s) 119, 551
Csp6I GTAC 1 cut(s) 502
CviAII CATG 3 cut(s) 176, 337, 428
CviJI RGCY 5 cut(s) 14, 20, 137, 433, 595
CviKI_1 RGCY 5 cut(s) 14, 20, 137, 433, 595
CviQI GTAC 1 cut(s) 502
DdeI CTNAG 3 cut(s) 210, 543, 591
DpnI GATC 3 cut(s) 5, 129, 533
DpnII GATC 3 cut(s) 3, 127, 531
DraIII CACNNNGTG 1 cut(s) 638
Eam1104I CTCTTC 2 cut(s) 510, 612
EarI CTCTTC 2 cut(s) 510, 612
Eco130I CCWWGG 2 cut(s) 101, 427
Eco47III AGCGCT 1 cut(s) 550
EcoT14I CCWWGG 2 cut(s) 101, 427
ErhI CCWWGG 2 cut(s) 101, 427
FaeI CATG 3 cut(s) 179, 340, 431
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FatI CATG 3 cut(s) 175, 336, 427
FbaI TGATCA 2 cut(s) 127, 531
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 2 cut(s) 458, 641
Fsp4HI GCNGC 1 cut(s) 120
FspBI CTAG 1 cut(s) 102
GlaI GCGC 2 cut(s) 118, 550
GluI GCNGC 1 cut(s) 120
HaeII RGCGCY 1 cut(s) 552
HhaI GCGC 2 cut(s) 119, 551
Hin1II CATG 3 cut(s) 179, 340, 431
Hin6I GCGC 2 cut(s) 117, 549
HinP1I GCGC 2 cut(s) 117, 549
HindIII AAGCTT 1 cut(s) 12
HinfI GANTC 3 cut(s) 342, 452, 581
HphI GGTGA 2 cut(s) 31, 311
Hpy166II GTNNAC 3 cut(s) 185, 445, 630
Hpy188I TCNGA 6 cut(s) 132, 211, 457, 531, 556, 652
Hpy188III TCNNGA 1 cut(s) 391
Hpy8I GTNNAC 3 cut(s) 185, 445, 630
HpyAV CCTTC 1 cut(s) 346
HpyCH4V TGCA 2 cut(s) 479, 575
HpyF10VI GCNNNNNNNGC 1 cut(s) 548
HpyF3I CTNAG 3 cut(s) 210, 543, 591
Hsp92II CATG 3 cut(s) 179, 340, 431
HspAI GCGC 2 cut(s) 117, 549
Ksp22I TGATCA 2 cut(s) 127, 531
Kzo9I GATC 3 cut(s) 3, 127, 531
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 3 cut(s) 55, 151, 638
Lsp1109I GCAGC 1 cut(s) 106
LweI GCATC 1 cut(s) 562
MaeI CTAG 1 cut(s) 102
MaeIII GTNAC 2 cut(s) 106, 412
MalI GATC 3 cut(s) 5, 129, 533
MboI GATC 3 cut(s) 3, 127, 531
MboII GAAGA 7 cut(s) 368, 379, 476, 518, 527, 571, 599
MluCI AATT 1 cut(s) 618
MnlI CCTC 7 cut(s) 36, 38, 193, 205, 260, 451, 490
MroXI GAANNNNTTC 1 cut(s) 383
MseI TTAA 1 cut(s) 617
MwoI GCNNNNNNNGC 1 cut(s) 548
NcoI CCATGG 1 cut(s) 427
NdeII GATC 3 cut(s) 3, 127, 531
NlaIII CATG 3 cut(s) 179, 340, 431
NlaIV GGNNCC 1 cut(s) 640
NspI RCATGY 2 cut(s) 179, 340
PdmI GAANNNNTTC 1 cut(s) 383
PfeI GAWTC 3 cut(s) 342, 452, 581
PkrI GCNGC 1 cut(s) 121
PshBI ATTAAT 1 cut(s) 617
PspN4I GGNNCC 1 cut(s) 640
RsaI GTAC 1 cut(s) 503
RsaNI GTAC 1 cut(s) 502
SaqAI TTAA 1 cut(s) 617
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 3 cut(s) 3, 127, 531
SetI ASST 6 cut(s) 16, 22, 363, 462, 597, 640
SfaNI GCATC 1 cut(s) 562
Sse9I AATT 1 cut(s) 618
SsiI CCGC 1 cut(s) 66
SspI AATATT 2 cut(s) 317, 483
SspMI CTAG 1 cut(s) 102
StyI CCWWGG 2 cut(s) 101, 427
TaqI TCGA 2 cut(s) 88, 149
TasI AATT 1 cut(s) 618
TatI WGTACW 1 cut(s) 501
TfiI GAWTC 3 cut(s) 342, 452, 581
Tru1I TTAA 1 cut(s) 617
Tru9I TTAA 1 cut(s) 617
TseI GCWGC 1 cut(s) 119
TspDTI ATGAA 4 cut(s) 327, 420, 465, 591
VspI ATTAAT 1 cut(s) 617
XceI RCATGY 2 cut(s) 179, 340
XmaJI CCTAGG 1 cut(s) 101
XmnI GAANNNNTTC 1 cut(s) 383
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.