FvH4_5g01880

Stress responsive A/B Barrel Domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0010456
Physical Location & Seq
Forward (+)
1172114 .. 1174914
2801 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g01880.t1

Sequence Viewer

Length: 852 bp
ATGCAAGCTCACTGCTCCACACTCTCCCCTATTTCCCTCGGAAACCCCAACCGCCGATTCCCCATCATCTCCCGTCCTGCGCCTTTTAACGTTTATCGATCGAATGGAGGTGCGGATTCGTGGGTGGGGAGGAAAAAGAATAGGGGAGTGACGGTTTCGGCTTCTGAGGAGCAGAGCTCAAATTCTGATTTGCCCAAGAGAAGAAAGATTGTTGAACATGTATGTCTGCTTAAATCGAAGAAGGATTTATCTGATGAGGAAGAGAAGGTTATGCTGGATTATCTTTATACAACCCAGTATCAAATGAGAGGCATTGTCGCGATATCATTAGGACGCATCGGTAACCAAAATCCCGAAAAGTATAGTTATGCTTTCTACCTGCGTTTCCAGAGAAAAGAAGACCTTGTAAAGTTTTACCAGCATCCTTTCTACTTGGGAGTTCTCAAGGATCATGTATCGCCTTACTGCCATGGATTGCTAAATGTAGATTATGAGTCTGAAGTAGAAGATGATATCCTTCCTATATTCCGAAAAGGAGAGGAATTCAACTTTGGGGTAGAGTTTGTGCTGCTGATTTCCTTCATCAATAATGCATCTGATCATGCTGAAGATGCATTGGTTTCTTTGGAAGGGCTGCTGATGGGATTCCCATCCTTGATTGTCCAATCTACTCAGGGTATGAATTTTAACCCCAGCAGCAAGGAGTATACACACGGAGTGGTTATCAGATTCCGGTCATTTGACGCTTTCGAGATATTTATCGGAAGCTCAGAATACAAAGATGATTTCAACAGGAATTCTTGCTCACTTTCTTCTGCTATTGACAAGCATGTGCAGGGTAGGTCTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dabb

Protein Analysis

284

Amino Acids

32.24

Weight (kDa)

6.26

Isoelectric Point (pI)

45.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dabb PF07876 71 - 165 2.3e-09 Stress responsive A/B Barrel Domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 387
AccI GTMKAC 1 cut(s) 707
AccII CGCG 1 cut(s) 320
AciI CCGC 2 cut(s) 52, 113
AclI AACGTT 1 cut(s) 90
AclWI GGATC 1 cut(s) 456
AcsI RAATTY 4 cut(s) 181, 542, 682, 796
AcuI CTGAAG 2 cut(s) 519, 627
AdeI CACNNNGTG 1 cut(s) 718
AflIII ACRYGT 1 cut(s) 217
AgsI TTSAA 3 cut(s) 215, 547, 790
AjuI GAANNNNNNNTTGG 4 cut(s) 41, 73, 534, 566
AluBI AGCT 3 cut(s) 8, 177, 768
AluI AGCT 3 cut(s) 8, 177, 768
Alw21I GWGCWC 1 cut(s) 179
AlwI GGATC 1 cut(s) 456
ApeKI GCWGC 3 cut(s) 568, 634, 696
ApoI RAATTY 4 cut(s) 181, 542, 682, 796
AspLEI GCGC 1 cut(s) 82
BanII GRGCYC 1 cut(s) 179
BbsI GAAGAC 1 cut(s) 405
Bbv12I GWGCWC 1 cut(s) 179
BbvI GCAGC 3 cut(s) 555, 621, 708
BccI CCATC 3 cut(s) 71, 634, 658
BclI TGATCA 1 cut(s) 598
BfuAI ACCTGC 1 cut(s) 387
BisI GCNGC 3 cut(s) 569, 635, 697
BlsI GCNGC 3 cut(s) 570, 636, 698
BmrI ACTGGG 1 cut(s) 289
BmsI GCATC 4 cut(s) 345, 430, 601, 602
BmuI ACTGGG 1 cut(s) 289
BpiI GAAGAC 1 cut(s) 405
BplI GAGNNNNNCTC 2 cut(s) 161, 193
BpuEI CTTGAG 1 cut(s) 428
Bsa29I ATCGAT 1 cut(s) 97
BsaBI GATNNNNATC 2 cut(s) 649, 758
BsaJI CCNNGG 2 cut(s) 37, 469
BsaWI WCCGGW 1 cut(s) 732
BsaXI ACNNNNNCTCC 2 cut(s) 138, 168
Bse1I ACTGG 1 cut(s) 295
Bse8I GATNNNNATC 2 cut(s) 649, 758
BseCI ATCGAT 1 cut(s) 97
BseDI CCNNGG 2 cut(s) 37, 469
BseGI GGATG 2 cut(s) 421, 650
BseJI GATNNNNATC 2 cut(s) 649, 758
BseMII CTCAG 3 cut(s) 156, 686, 783
BseNI ACTGG 1 cut(s) 295
BseRI GAGGAG 1 cut(s) 182
BseXI GCAGC 3 cut(s) 555, 621, 708
BseYI CCCAGC 1 cut(s) 692
Bsh1236I CGCG 1 cut(s) 320
Bsh1285I CGRYCG 1 cut(s) 101
BshVI ATCGAT 1 cut(s) 97
BsiEI CGRYCG 1 cut(s) 101
BsiHKAI GWGCWC 1 cut(s) 179
BsiSI CCGG 1 cut(s) 733
Bsp1286I GDGCHC 1 cut(s) 179
Bsp143I GATC 3 cut(s) 98, 448, 598
Bsp19I CCATGG 1 cut(s) 469
Bsp68I TCGCGA 1 cut(s) 320
BspACI CCGC 2 cut(s) 52, 113
BspCNI CTCAG 3 cut(s) 157, 685, 782
BspDI ATCGAT 1 cut(s) 97
BspFNI CGCG 1 cut(s) 320
BspMI ACCTGC 1 cut(s) 387
BspPI GGATC 1 cut(s) 456
BsrI ACTGG 1 cut(s) 295
BssECI CCNNGG 2 cut(s) 37, 469
BssMI GATC 3 cut(s) 98, 448, 598
BssNAI GTATAC 1 cut(s) 708
BssT1I CCWWGG 1 cut(s) 469
Bst1107I GTATAC 1 cut(s) 708
Bst4CI ACNGT 1 cut(s) 154
Bst6I CTCTTC 1 cut(s) 255
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 3 cut(s) 165, 672, 769
BstDSI CCRYGG 1 cut(s) 469
BstEII GGTNACC 1 cut(s) 341
BstF5I GGATG 2 cut(s) 421, 650
BstFNI CGCG 1 cut(s) 320
BstHHI GCGC 1 cut(s) 82
BstKTI GATC 3 cut(s) 101, 451, 601
BstMBI GATC 3 cut(s) 98, 448, 598
BstMCI CGRYCG 1 cut(s) 101
BstMWI GCNNNNNNNGC 1 cut(s) 611
BstNSI RCATGY 2 cut(s) 221, 833
BstPI GGTNACC 1 cut(s) 341
BstUI CGCG 1 cut(s) 320
BstV1I GCAGC 3 cut(s) 555, 621, 708
BstV2I GAAGAC 1 cut(s) 405
BstZ17I GTATAC 1 cut(s) 708
Bsu15I ATCGAT 1 cut(s) 97
BsuTUI ATCGAT 1 cut(s) 97
BtgI CCRYGG 1 cut(s) 469
BtsCI GGATG 2 cut(s) 421, 650
BtsI GCAGTG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 10
BtuMI TCGCGA 1 cut(s) 320
BveI ACCTGC 1 cut(s) 387
Cac8I GCNNGC 1 cut(s) 6
CfoI GCGC 1 cut(s) 82
ClaI ATCGAT 1 cut(s) 97
CseI GACGC 2 cut(s) 342, 752
CviAII CATG 5 cut(s) 218, 452, 470, 602, 830
CviJI RGCY 5 cut(s) 8, 161, 177, 634, 768
CviKI_1 RGCY 5 cut(s) 8, 161, 177, 634, 768
DdeI CTNAG 3 cut(s) 165, 672, 769
DpnI GATC 3 cut(s) 100, 450, 600
DpnII GATC 3 cut(s) 98, 448, 598
DraIII CACNNNGTG 1 cut(s) 718
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Ecl136II GAGCTC 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 469
Eco24I GRGCYC 1 cut(s) 179
Eco32I GATATC 2 cut(s) 324, 514
Eco53kI GAGCTC 1 cut(s) 177
Eco57I CTGAAG 2 cut(s) 519, 627
Eco91I GGTNACC 1 cut(s) 341
EcoICRI GAGCTC 1 cut(s) 177
EcoO65I GGTNACC 1 cut(s) 341
EcoRI GAATTC 2 cut(s) 542, 796
EcoRV GATATC 2 cut(s) 324, 514
EcoT14I CCWWGG 1 cut(s) 469
EcoT22I ATGCAT 2 cut(s) 595, 616
EcoT38I GRGCYC 1 cut(s) 179
ErhI CCWWGG 1 cut(s) 469
FaeI CATG 5 cut(s) 221, 455, 473, 605, 833
FalI AAGNNNNNCTT 2 cut(s) 387, 419
FatI CATG 5 cut(s) 217, 451, 469, 601, 829
FbaI TGATCA 1 cut(s) 598
FblI GTMKAC 1 cut(s) 707
Fnu4HI GCNGC 3 cut(s) 569, 635, 697
FokI GGATG 2 cut(s) 408, 637
FriOI GRGCYC 1 cut(s) 179
Fsp4HI GCNGC 3 cut(s) 569, 635, 697
GlaI GCGC 1 cut(s) 81
GluI GCNGC 3 cut(s) 569, 635, 697
GsaI CCCAGC 1 cut(s) 696
HapII CCGG 1 cut(s) 733
HgaI GACGC 2 cut(s) 342, 752
HhaI GCGC 1 cut(s) 82
Hin1II CATG 5 cut(s) 221, 455, 473, 605, 833
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HinfI GANTC 5 cut(s) 57, 116, 494, 645, 729
HpaII CCGG 1 cut(s) 733
Hpy166II GTNNAC 1 cut(s) 708
Hpy188III TCNNGA 4 cut(s) 319, 353, 388, 751
Hpy8I GTNNAC 1 cut(s) 708
HpyAV CCTTC 5 cut(s) 235, 259, 527, 589, 623
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 4 cut(s) 4, 593, 614, 835
HpyF10VI GCNNNNNNNGC 1 cut(s) 611
HpyF3I CTNAG 3 cut(s) 165, 672, 769
HpySE526I ACGT 1 cut(s) 90
Hsp92II CATG 5 cut(s) 221, 455, 473, 605, 833
HspAI GCGC 1 cut(s) 80
Ksp22I TGATCA 1 cut(s) 598
Kzo9I GATC 3 cut(s) 98, 448, 598
LmnI GCTCC 2 cut(s) 20, 169
Lsp1109I GCAGC 3 cut(s) 555, 621, 708
LweI GCATC 4 cut(s) 345, 430, 601, 602
MaeII ACGT 1 cut(s) 90
MaeIII GTNAC 2 cut(s) 148, 341
MalI GATC 3 cut(s) 100, 450, 600
MboI GATC 3 cut(s) 98, 448, 598
MboII GAAGA 7 cut(s) 213, 250, 272, 410, 518, 620, 804
MhlI GDGCHC 1 cut(s) 179
MluCI AATT 4 cut(s) 181, 542, 682, 796
MlyI GAGTC 1 cut(s) 503
MnlI CCTC 7 cut(s) 47, 101, 123, 160, 250, 302, 532
Mph1103I ATGCAT 2 cut(s) 595, 616
MseI TTAA 3 cut(s) 87, 231, 687
MspI CCGG 1 cut(s) 733
MvnI CGCG 1 cut(s) 320
MwoI GCNNNNNNNGC 1 cut(s) 611
NcoI CCATGG 1 cut(s) 469
NdeII GATC 3 cut(s) 98, 448, 598
NlaIII CATG 5 cut(s) 221, 455, 473, 605, 833
NmuCI GTSAC 1 cut(s) 148
NruI TCGCGA 1 cut(s) 320
NsiI ATGCAT 2 cut(s) 595, 616
NspI RCATGY 2 cut(s) 221, 833
PciI ACATGT 1 cut(s) 217
PfeI GAWTC 4 cut(s) 57, 116, 645, 729
PkrI GCNGC 3 cut(s) 570, 636, 698
Ple19I CGATCG 1 cut(s) 101
PleI GAGTC 1 cut(s) 502
PpsI GAGTC 1 cut(s) 502
PscI ACATGT 1 cut(s) 217
Psp124BI GAGCTC 1 cut(s) 179
Psp1406I AACGTT 1 cut(s) 90
PspEI GGTNACC 1 cut(s) 341
PspFI CCCAGC 1 cut(s) 692
PvuI CGATCG 1 cut(s) 101
RruI TCGCGA 1 cut(s) 320
SacI GAGCTC 1 cut(s) 179
SaqAI TTAA 3 cut(s) 87, 231, 687
SatI GCNGC 3 cut(s) 569, 635, 697
Sau3AI GATC 3 cut(s) 98, 448, 598
SchI GAGTC 1 cut(s) 503
SduI GDGCHC 1 cut(s) 179
SetI ASST 9 cut(s) 10, 93, 112, 179, 270, 381, 405, 770, 845
SfaNI GCATC 4 cut(s) 345, 430, 601, 602
SmlI CTYRAG 1 cut(s) 443
SmoI CTYRAG 1 cut(s) 443
Sse9I AATT 4 cut(s) 181, 542, 682, 796
SsiI CCGC 2 cut(s) 52, 113
SstI GAGCTC 1 cut(s) 179
StyI CCWWGG 1 cut(s) 469
TaaI ACNGT 1 cut(s) 154
TaiI ACGT 1 cut(s) 93
TaqI TCGA 4 cut(s) 97, 101, 236, 750
TasI AATT 4 cut(s) 181, 542, 682, 796
TfiI GAWTC 4 cut(s) 57, 116, 645, 729
Tru1I TTAA 3 cut(s) 87, 231, 687
Tru9I TTAA 3 cut(s) 87, 231, 687
TscAI CASTG 1 cut(s) 17
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 3 cut(s) 568, 634, 696
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 2 cut(s) 571, 695
TspGWI ACGGA 1 cut(s) 729
TspRI CASTG 1 cut(s) 17
XapI RAATTY 4 cut(s) 181, 542, 682, 796
XceI RCATGY 2 cut(s) 221, 833
XmiI GTMKAC 1 cut(s) 707
Zsp2I ATGCAT 2 cut(s) 595, 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.