Rroxscaffold_3G00257570

Stress responsive A/B Barrel Domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0010456
Physical Location & Seq
Forward (+)
51906806 .. 51911596
4791 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00257570.1

Sequence Viewer

Length: 876 bp
ATGCTCATTCAAGCTCATTGCTCCACACTCTCTCCTTTTTCTCTCACAAACACTACCCGCCAATTCCCTATCATCTCCCGCCCTGCCCCTTTTAATGTGTATCGATCGAATGGAGCTGTGAGCTCGTGGTTGGGGAGGAAAAAGAATCGGGGAGTGATAGTTTCGGCTTCTGAGGAGCAGAGCTCAAGCCCCAATTTGCAGAAGAGAAGAAAGATCATCGAACACATATGTCTGCTCAAATCGAAGGAGGATTTATCTGATGAGGAAGAGAAGGATATGCTGGATTATCTGTATACAACCCAGTATCAAATGAGAGGCATTGTTGCAATATCATTAGGACGTATCGGTAATCAAAATCCCGACAAGTATAGCTACGCTTTCTACCTGCGTTTCCAGAGAAAAGAAGACCTTGTAAAGTTTTACCAGCATCCTTTCTACTTGGGAGTTCTCAAGGATCATGTATCGCCTTACTGCCATGAATTGCTAAATGTAGATTATGAATCTGAAGTAGAAGATGATATCCTTCCTATATTTCGAAAAGGAGAGGAATTCAACTTTGGTGTGGAGTTTGTGCTTCTGATTTCCTTCGTCGATAATGCATCTGATCATGCGGAAGATGCATTGGTTTCTTTGGAAGGGCTGCTGATGGGATTCCCATCCTTGATTGTCCAATCTACTCAAGGTGTGAATTTTAACCCCAGCAGCAAGGAGTATACACATGGAGTAGTGATCAGATTTCGGTCGTTTGACACTTTTGAGATATTTTTCGGAAGCTCAGAATACAATGACTTATGGAAGTCAAAGTTCGAGAAAATCACTCAGAAAACACTTTCTGTCCATTTTCTAATTCAGCCAGTGGGTAGTGAGATCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dabb

Protein Analysis

291

Amino Acids

33.52

Weight (kDa)

5.79

Isoelectric Point (pI)

48.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dabb PF07876 73 - 167 9.6e-11 Stress responsive A/B Barrel Domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 393
AccI GTMKAC 2 cut(s) 293, 713
AciI CCGC 3 cut(s) 58, 79, 611
AclWI GGATC 1 cut(s) 462
AcsI RAATTY 2 cut(s) 548, 688
AcuI CTGAAG 1 cut(s) 525
AgsI TTSAA 2 cut(s) 11, 553
AjuI GAANNNNNNNTTGG 2 cut(s) 540, 572
AluBI AGCT 6 cut(s) 14, 116, 123, 183, 372, 774
AluI AGCT 6 cut(s) 14, 116, 123, 183, 372, 774
Alw21I GWGCWC 2 cut(s) 125, 185
AlwI GGATC 1 cut(s) 462
ApeKI GCWGC 2 cut(s) 640, 702
ApoI RAATTY 2 cut(s) 548, 688
AsuII TTCGAA 1 cut(s) 535
BanII GRGCYC 2 cut(s) 125, 185
BauI CACGAG 1 cut(s) 124
BbsI GAAGAC 1 cut(s) 411
Bbv12I GWGCWC 2 cut(s) 125, 185
BbvI GCAGC 2 cut(s) 627, 714
BccI CCATC 2 cut(s) 640, 664
BclI TGATCA 2 cut(s) 604, 729
BfuAI ACCTGC 1 cut(s) 393
BisI GCNGC 2 cut(s) 641, 703
BlsI GCNGC 2 cut(s) 642, 704
BmrI ACTGGG 1 cut(s) 295
BmsI GCATC 3 cut(s) 436, 607, 608
BmuI ACTGGG 1 cut(s) 295
BpiI GAAGAC 1 cut(s) 411
BplI GAGNNNNNCTC 2 cut(s) 167, 199
Bpu14I TTCGAA 1 cut(s) 535
BpuEI CTTGAG 3 cut(s) 169, 434, 663
Bsa29I ATCGAT 1 cut(s) 103
BsaBI GATNNNNATC 1 cut(s) 655
BsaXI ACNNNNNCTCC 4 cut(s) 16, 46, 144, 174
Bse1I ACTGG 2 cut(s) 301, 854
Bse3DI GCAATG 1 cut(s) 16
Bse8I GATNNNNATC 1 cut(s) 655
BseCI ATCGAT 1 cut(s) 103
BseGI GGATG 2 cut(s) 427, 656
BseJI GATNNNNATC 1 cut(s) 655
BseMI GCAATG 1 cut(s) 16
BseMII CTCAG 3 cut(s) 162, 789, 833
BseNI ACTGG 2 cut(s) 301, 854
BseRI GAGGAG 1 cut(s) 188
BseXI GCAGC 2 cut(s) 627, 714
BseYI CCCAGC 1 cut(s) 698
Bsh1285I CGRYCG 2 cut(s) 107, 743
BshVI ATCGAT 1 cut(s) 103
BsiEI CGRYCG 2 cut(s) 107, 743
BsiHKAI GWGCWC 2 cut(s) 125, 185
Bsp119I TTCGAA 1 cut(s) 535
Bsp1286I GDGCHC 2 cut(s) 125, 185
Bsp143I GATC 6 cut(s) 104, 213, 454, 604, 729, 867
BspACI CCGC 3 cut(s) 58, 79, 611
BspCNI CTCAG 3 cut(s) 163, 788, 832
BspDI ATCGAT 1 cut(s) 103
BspMI ACCTGC 1 cut(s) 393
BspPI GGATC 1 cut(s) 462
BspT104I TTCGAA 1 cut(s) 535
BsrDI GCAATG 1 cut(s) 16
BsrI ACTGG 2 cut(s) 301, 854
BssMI GATC 6 cut(s) 104, 213, 454, 604, 729, 867
BssNAI GTATAC 2 cut(s) 294, 714
BssSI CACGAG 1 cut(s) 124
Bst1107I GTATAC 2 cut(s) 294, 714
Bst2BI CACGAG 1 cut(s) 124
Bst6I CTCTTC 2 cut(s) 197, 261
BstBI TTCGAA 1 cut(s) 535
BstDEI CTNAG 3 cut(s) 171, 775, 819
BstF5I GGATG 2 cut(s) 427, 656
BstKTI GATC 6 cut(s) 107, 216, 457, 607, 732, 870
BstMBI GATC 6 cut(s) 104, 213, 454, 604, 729, 867
BstMCI CGRYCG 2 cut(s) 107, 743
BstMWI GCNNNNNNNGC 1 cut(s) 617
BstV1I GCAGC 2 cut(s) 627, 714
BstV2I GAAGAC 1 cut(s) 411
BstZ17I GTATAC 2 cut(s) 294, 714
Bsu15I ATCGAT 1 cut(s) 103
BsuTUI ATCGAT 1 cut(s) 103
BtsCI GGATG 2 cut(s) 427, 656
BtsIMutI CAGTG 1 cut(s) 861
BveI ACCTGC 1 cut(s) 393
ClaI ATCGAT 1 cut(s) 103
CviAII CATG 5 cut(s) 458, 476, 608, 719, 871
DdeI CTNAG 3 cut(s) 171, 775, 819
DpnI GATC 6 cut(s) 106, 215, 456, 606, 731, 869
DpnII GATC 6 cut(s) 104, 213, 454, 604, 729, 867
Eam1104I CTCTTC 2 cut(s) 197, 261
EarI CTCTTC 2 cut(s) 197, 261
Ecl136II GAGCTC 2 cut(s) 123, 183
Eco24I GRGCYC 2 cut(s) 125, 185
Eco32I GATATC 1 cut(s) 520
Eco53kI GAGCTC 2 cut(s) 123, 183
Eco57I CTGAAG 1 cut(s) 525
EcoICRI GAGCTC 2 cut(s) 123, 183
EcoRI GAATTC 1 cut(s) 548
EcoRV GATATC 1 cut(s) 520
EcoT22I ATGCAT 2 cut(s) 601, 622
EcoT38I GRGCYC 2 cut(s) 125, 185
FaeI CATG 5 cut(s) 461, 479, 611, 722, 874
FalI AAGNNNNNCTT 2 cut(s) 393, 425
FatI CATG 5 cut(s) 457, 475, 607, 718, 870
FauI CCCGC 2 cut(s) 65, 86
FauNDI CATATG 1 cut(s) 227
FbaI TGATCA 2 cut(s) 604, 729
FblI GTMKAC 2 cut(s) 293, 713
Fnu4HI GCNGC 2 cut(s) 641, 703
FokI GGATG 2 cut(s) 414, 643
FriOI GRGCYC 2 cut(s) 125, 185
Fsp4HI GCNGC 2 cut(s) 641, 703
GluI GCNGC 2 cut(s) 641, 703
GsaI CCCAGC 1 cut(s) 702
Hin1II CATG 5 cut(s) 461, 479, 611, 722, 874
HinfI GANTC 3 cut(s) 145, 500, 651
Hpy166II GTNNAC 2 cut(s) 294, 714
Hpy188I TCNGA 9 cut(s) 172, 259, 505, 579, 604, 734, 770, 778, 822
Hpy188III TCNNGA 3 cut(s) 359, 394, 808
Hpy8I GTNNAC 2 cut(s) 294, 714
Hpy99I CGWCG 1 cut(s) 593
HpyAV CCTTC 5 cut(s) 238, 265, 533, 595, 629
HpyCH4IV ACGT 1 cut(s) 340
HpyCH4V TGCA 4 cut(s) 199, 326, 599, 620
HpyF10VI GCNNNNNNNGC 1 cut(s) 617
HpyF3I CTNAG 3 cut(s) 171, 775, 819
HpySE526I ACGT 1 cut(s) 340
Hsp92II CATG 5 cut(s) 461, 479, 611, 722, 874
Ksp22I TGATCA 2 cut(s) 604, 729
Kzo9I GATC 6 cut(s) 104, 213, 454, 604, 729, 867
LmnI GCTCC 3 cut(s) 26, 113, 175
LpnPI CCDG 8 cut(s) 96, 266, 314, 398, 407, 437, 712, 867
Lsp1109I GCAGC 2 cut(s) 627, 714
LweI GCATC 3 cut(s) 436, 607, 608
MaeII ACGT 1 cut(s) 340
MalI GATC 6 cut(s) 106, 215, 456, 606, 731, 869
MboI GATC 6 cut(s) 104, 213, 454, 604, 729, 867
MboII GAAGA 6 cut(s) 214, 219, 278, 416, 524, 626
MhlI GDGCHC 2 cut(s) 125, 185
MluCI AATT 6 cut(s) 62, 193, 479, 548, 688, 846
MnlI CCTC 6 cut(s) 129, 166, 241, 256, 308, 538
Mph1103I ATGCAT 2 cut(s) 601, 622
MseI TTAA 2 cut(s) 93, 693
MwoI GCNNNNNNNGC 1 cut(s) 617
NdeI CATATG 1 cut(s) 227
NdeII GATC 6 cut(s) 104, 213, 454, 604, 729, 867
NlaIII CATG 5 cut(s) 461, 479, 611, 722, 874
NsiI ATGCAT 2 cut(s) 601, 622
NspV TTCGAA 1 cut(s) 535
PfeI GAWTC 3 cut(s) 145, 500, 651
PkrI GCNGC 2 cut(s) 642, 704
Ple19I CGATCG 1 cut(s) 107
Psp124BI GAGCTC 2 cut(s) 125, 185
PspFI CCCAGC 1 cut(s) 698
PvuI CGATCG 1 cut(s) 107
SacI GAGCTC 2 cut(s) 125, 185
SaqAI TTAA 2 cut(s) 93, 693
SatI GCNGC 2 cut(s) 641, 703
Sau3AI GATC 6 cut(s) 104, 213, 454, 604, 729, 867
SduI GDGCHC 2 cut(s) 125, 185
SfaNI GCATC 3 cut(s) 436, 607, 608
SfuI TTCGAA 1 cut(s) 535
SmlI CTYRAG 3 cut(s) 184, 449, 678
SmoI CTYRAG 3 cut(s) 184, 449, 678
Sse9I AATT 6 cut(s) 62, 193, 479, 548, 688, 846
SsiI CCGC 3 cut(s) 58, 79, 611
SstI GAGCTC 2 cut(s) 125, 185
TaiI ACGT 1 cut(s) 343
TaqI TCGA 7 cut(s) 103, 107, 219, 242, 535, 591, 807
TaqII GACCGA 1 cut(s) 729
TasI AATT 6 cut(s) 62, 193, 479, 548, 688, 846
TfiI GAWTC 3 cut(s) 145, 500, 651
Tru1I TTAA 2 cut(s) 93, 693
Tru9I TTAA 2 cut(s) 93, 693
TscAI CASTG 1 cut(s) 861
TseI GCWGC 2 cut(s) 640, 702
TspDTI ATGAA 2 cut(s) 492, 513
TspRI CASTG 1 cut(s) 861
XapI RAATTY 2 cut(s) 548, 688
XmiI GTMKAC 2 cut(s) 293, 713
Zsp2I ATGCAT 2 cut(s) 601, 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.