Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000220.1

Orthogroup ID

OG0010456

Physical Location & Seq

Genomic Coordinates Forward (+)

120918 .. 122939

Gene Structure 2022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000220.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

atgctggattatctgtatacaacccagtatcaaatgagaggcattgttgcaatatcattaggacgtatcggtaatcaaaatcccgacaagtatagctacgctttctacctgcgtttccagagaaaagaagaccttgtaaagttttaccagcatcctttctacttgggagttctcaaggatcatgtatcgccttactgccatgaattgctaaatgtagattatgaatctgaagtagaagatgatatcctgcctatatttcgaaaaggagaggaattcaactttggtgtggagtttgtgcttctgatttcctttgtcaataatgcatctgatcatgtggaagatgcattggtttctttggaagggctgctgatgggattccaatccttgattgtccaatctactcaaggtgtgaattttaaccccagcagcaaggagtatacacatggagtagtgatcagatttcggtcgtttgacgcttttgagatatttttcggaagctcagaatacaaagacttatggaagtcaaagttcgagaaaatcactcagaaaacactttctgtccattttctaattcaaccagtgggtagtgagatcatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dabb

Protein Analysis

199

Amino Acids

23.18

Weight (kDa)

5.22

Isoelectric Point (pI)

34.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32500 AT2G32500
fragaria_vesca	FvH4_5g01880
malus_domestica	MD06G1077000.v1.1
prunus_persica	Prupe.5G095100_v2.0.a1 Prupe.5G095100_v2.0.a1
pyrus_communis	pycom06g07460
rosa_chinensis	RchiOBHm_Chr7g0198641
rosa_laevigata	RLG00000003852
rosa_multiflora	Rmu_sc0000220.1_g000018 Rmu_sc0009374.1_g000002
rosa_roxburghii	Rroxscaffold_3G00257570
rosa_rugosa	Rorug07G0048600 Rorug07G0048700 Rorug07G0048800 Rorug07G0048800
rosa_samantha	Rh7AG172400 Rh7BG175900 Rh7CG181800 Rh7DG174700
rosa_wichuraiana	Rw7G015130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	117
AccI	GTMKAC	2 cut(s)	17, 437
AclWI	GGATC	1 cut(s)	186
AcsI	RAATTY	2 cut(s)	272, 412
AcuI	CTGAAG	1 cut(s)	249
AgsI	TTSAA	2 cut(s)	277, 575
AjuI	GAANNNNNNNTTGG	2 cut(s)	264, 296
AluBI	AGCT	2 cut(s)	96, 498
AluI	AGCT	2 cut(s)	96, 498
AlwI	GGATC	1 cut(s)	186
ApeKI	GCWGC	2 cut(s)	364, 426
ApoI	RAATTY	2 cut(s)	272, 412
AsuII	TTCGAA	1 cut(s)	259
BbsI	GAAGAC	1 cut(s)	135
BbvI	GCAGC	2 cut(s)	351, 438
BccI	CCATC	1 cut(s)	364
BclI	TGATCA	2 cut(s)	328, 453
BfuAI	ACCTGC	1 cut(s)	117
BisI	GCNGC	2 cut(s)	365, 427
BlsI	GCNGC	2 cut(s)	366, 428
BmrI	ACTGGG	1 cut(s)	19
BmsI	GCATC	3 cut(s)	160, 331, 332
BmuI	ACTGGG	1 cut(s)	19
BpiI	GAAGAC	1 cut(s)	135
Bpu14I	TTCGAA	1 cut(s)	259
BpuEI	CTTGAG	2 cut(s)	158, 387
BsaBI	GATNNNNATC	1 cut(s)	379
Bse1I	ACTGG	2 cut(s)	25, 578
Bse8I	GATNNNNATC	1 cut(s)	379
BseGI	GGATG	1 cut(s)	151
BseJI	GATNNNNATC	1 cut(s)	379
BseMII	CTCAG	2 cut(s)	513, 557
BseNI	ACTGG	2 cut(s)	25, 578
BseXI	GCAGC	2 cut(s)	351, 438
BseYI	CCCAGC	1 cut(s)	422
Bsh1285I	CGRYCG	1 cut(s)	467
BsiEI	CGRYCG	1 cut(s)	467
Bsp119I	TTCGAA	1 cut(s)	259
Bsp143I	GATC	4 cut(s)	178, 328, 453, 591
BspCNI	CTCAG	2 cut(s)	512, 556
BspMI	ACCTGC	1 cut(s)	117
BspPI	GGATC	1 cut(s)	186
BspT104I	TTCGAA	1 cut(s)	259
BsrI	ACTGG	2 cut(s)	25, 578
BssMI	GATC	4 cut(s)	178, 328, 453, 591
BssNAI	GTATAC	2 cut(s)	18, 438
Bst1107I	GTATAC	2 cut(s)	18, 438
BstBI	TTCGAA	1 cut(s)	259
BstDEI	CTNAG	2 cut(s)	499, 543
BstF5I	GGATG	1 cut(s)	151
BstKTI	GATC	4 cut(s)	181, 331, 456, 594
BstMBI	GATC	4 cut(s)	178, 328, 453, 591
BstMCI	CGRYCG	1 cut(s)	467
BstV1I	GCAGC	2 cut(s)	351, 438
BstV2I	GAAGAC	1 cut(s)	135
BstZ17I	GTATAC	2 cut(s)	18, 438
BtsCI	GGATG	1 cut(s)	151
BtsIMutI	CAGTG	1 cut(s)	585
BveI	ACCTGC	1 cut(s)	117
CseI	GACGC	1 cut(s)	482
CviAII	CATG	5 cut(s)	182, 200, 332, 443, 595
CviJI	RGCY	3 cut(s)	96, 364, 498
CviKI_1	RGCY	3 cut(s)	96, 364, 498
DdeI	CTNAG	2 cut(s)	499, 543
DpnI	GATC	4 cut(s)	180, 330, 455, 593
DpnII	GATC	4 cut(s)	178, 328, 453, 591
Eco32I	GATATC	1 cut(s)	244
Eco57I	CTGAAG	1 cut(s)	249
EcoRI	GAATTC	1 cut(s)	272
EcoRV	GATATC	1 cut(s)	244
EcoT22I	ATGCAT	2 cut(s)	325, 346
FaeI	CATG	5 cut(s)	185, 203, 335, 446, 598
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FatI	CATG	5 cut(s)	181, 199, 331, 442, 594
FbaI	TGATCA	2 cut(s)	328, 453
FblI	GTMKAC	2 cut(s)	17, 437
Fnu4HI	GCNGC	2 cut(s)	365, 427
FokI	GGATG	1 cut(s)	138
Fsp4HI	GCNGC	2 cut(s)	365, 427
GluI	GCNGC	2 cut(s)	365, 427
GsaI	CCCAGC	1 cut(s)	426
HgaI	GACGC	1 cut(s)	482
Hin1II	CATG	5 cut(s)	185, 203, 335, 446, 598
HinfI	GANTC	2 cut(s)	224, 375
Hpy166II	GTNNAC	2 cut(s)	18, 438
Hpy188I	TCNGA	7 cut(s)	229, 303, 328, 458, 494, 502, 546
Hpy188III	TCNNGA	3 cut(s)	83, 118, 532
Hpy8I	GTNNAC	2 cut(s)	18, 438
HpyAV	CCTTC	1 cut(s)	353
HpyCH4IV	ACGT	1 cut(s)	64
HpyCH4V	TGCA	3 cut(s)	50, 323, 344
HpyF3I	CTNAG	2 cut(s)	499, 543
HpySE526I	ACGT	1 cut(s)	64
Hsp92II	CATG	5 cut(s)	185, 203, 335, 446, 598
Ksp22I	TGATCA	2 cut(s)	328, 453
Kzo9I	GATC	4 cut(s)	178, 328, 453, 591
LpnPI	CCDG	7 cut(s)	38, 122, 131, 161, 260, 436, 591
Lsp1109I	GCAGC	2 cut(s)	351, 438
LweI	GCATC	3 cut(s)	160, 331, 332
MaeII	ACGT	1 cut(s)	64
MalI	GATC	4 cut(s)	180, 330, 455, 593
MboI	GATC	4 cut(s)	178, 328, 453, 591
MboII	GAAGA	3 cut(s)	140, 248, 350
MluCI	AATT	4 cut(s)	203, 272, 412, 570
MnlI	CCTC	2 cut(s)	32, 262
Mph1103I	ATGCAT	2 cut(s)	325, 346
MseI	TTAA	1 cut(s)	417
NdeII	GATC	4 cut(s)	178, 328, 453, 591
NlaIII	CATG	5 cut(s)	185, 203, 335, 446, 598
NsiI	ATGCAT	2 cut(s)	325, 346
NspV	TTCGAA	1 cut(s)	259
PfeI	GAWTC	2 cut(s)	224, 375
PkrI	GCNGC	2 cut(s)	366, 428
PspFI	CCCAGC	1 cut(s)	422
SaqAI	TTAA	1 cut(s)	417
SatI	GCNGC	2 cut(s)	365, 427
Sau3AI	GATC	4 cut(s)	178, 328, 453, 591
SetI	ASST	6 cut(s)	67, 98, 111, 135, 409, 500
SfaNI	GCATC	3 cut(s)	160, 331, 332
SfuI	TTCGAA	1 cut(s)	259
SmlI	CTYRAG	2 cut(s)	173, 402
SmoI	CTYRAG	2 cut(s)	173, 402
Sse9I	AATT	4 cut(s)	203, 272, 412, 570
TaiI	ACGT	1 cut(s)	67
TaqI	TCGA	2 cut(s)	259, 531
TaqII	GACCGA	1 cut(s)	453
TasI	AATT	4 cut(s)	203, 272, 412, 570
TfiI	GAWTC	2 cut(s)	224, 375
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TscAI	CASTG	1 cut(s)	585
TseI	GCWGC	2 cut(s)	364, 426
TspDTI	ATGAA	2 cut(s)	216, 237
TspRI	CASTG	1 cut(s)	585
XapI	RAATTY	2 cut(s)	272, 412
XmiI	GTMKAC	2 cut(s)	17, 437
Zsp2I	ATGCAT	2 cut(s)	325, 346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.