Rh7CG181800

Stress responsive A/B Barrel Domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0010456
Physical Location & Seq
Reverse (-)
15759870 .. 15762361
2492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG181800.1

Sequence Viewer

Length: 879 bp
ATGCTCATTCAAGCTCATTGCTCCACACTCTCTCCTGTTTCTCTCACAAACACTACCCGCCAATTCCCTATCATCATCTCCCGCCCTGCCCCTTCTAATGTGTATCGATCGAATGGAGCTGTGAGTTCGTGGCTGGGGAGGAAAAAGAATCGGGGAGTGATAGTTTCGGCTTCTGAGGAGCAGAGCTCAAGCCCCAATTTGCAGAAGAGAAGAAAGATCATCGAACACATATGTCTGCTCAAATCGAAGGAGGATTTATCTGATGAGGAAGAAAAGGATATGCTGGATTATCTGTATACAACCCAGTATCAAATGAGAGGCATTGTTGCAATATCATTAGGACGTATCGGTAATCAAAATCCCGACAAGTATAGCTACGCTTTCTACCTGCGTTTCCAGAGAAAAGAAGACCTTGTAAAGTTTTACCAGCATCCTTTCTACTTGGGAGTTCTCAAGGATCATGTATCGCCTTACTGCCATGAATTGCTAAATGTAGATTATGAATCTGAAGTAGAAGATGATATCCTGCCTATATTTCGAAAAGGAGAGGAATTCAACTTTGGTGTGGAGTTTGTGCTTCTGATTTCCTTCGTCAATAATGCATCTGATCATGTGGAAGATGCATTGGTTTCTTTGGAAGGGCTGCTGATGGGATTCCAATCCTTGATTGTCCAATCTACTCAAGGTGTGAATTTTAACCCCAGCAGCAAGGAGTATACACATGGAGTAGTGATCAGATTTCGGTCGTTTGACGCTTTTGAGATATTTTTCGGAAGCTCAGAATACAAAGACTTATGGAAGTCAAAGTTCGAGAAAATCACTCAGAAAACACTTTCTGTCCATTTTCTAATTCAACCAGTGGGTAGTGAGATCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dabb

Protein Analysis

292

Amino Acids

33.57

Weight (kDa)

6.09

Isoelectric Point (pI)

49.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dabb PF07876 74 - 168 9.7e-11 Stress responsive A/B Barrel Domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 396
AccI GTMKAC 2 cut(s) 296, 716
AciI CCGC 2 cut(s) 58, 82
AclWI GGATC 1 cut(s) 465
AcsI RAATTY 2 cut(s) 551, 691
AcuI CTGAAG 1 cut(s) 528
AgsI TTSAA 3 cut(s) 11, 556, 854
AjuI GAANNNNNNNTTGG 2 cut(s) 543, 575
AluBI AGCT 5 cut(s) 14, 119, 186, 375, 777
AluI AGCT 5 cut(s) 14, 119, 186, 375, 777
Alw21I GWGCWC 1 cut(s) 188
AlwI GGATC 1 cut(s) 465
ApeKI GCWGC 2 cut(s) 643, 705
ApoI RAATTY 2 cut(s) 551, 691
AsuII TTCGAA 1 cut(s) 538
BanII GRGCYC 1 cut(s) 188
BbsI GAAGAC 1 cut(s) 414
Bbv12I GWGCWC 1 cut(s) 188
BbvI GCAGC 2 cut(s) 630, 717
BccI CCATC 1 cut(s) 643
BclI TGATCA 2 cut(s) 607, 732
BfuAI ACCTGC 1 cut(s) 396
BisI GCNGC 2 cut(s) 644, 706
BlsI GCNGC 2 cut(s) 645, 707
BmrI ACTGGG 1 cut(s) 298
BmsI GCATC 3 cut(s) 439, 610, 611
BmuI ACTGGG 1 cut(s) 298
BpiI GAAGAC 1 cut(s) 414
BplI GAGNNNNNCTC 2 cut(s) 170, 202
Bpu14I TTCGAA 1 cut(s) 538
BpuEI CTTGAG 3 cut(s) 172, 437, 666
Bsa29I ATCGAT 1 cut(s) 106
BsaBI GATNNNNATC 1 cut(s) 658
BsaXI ACNNNNNCTCC 4 cut(s) 16, 46, 147, 177
Bse1I ACTGG 2 cut(s) 304, 857
Bse3DI GCAATG 1 cut(s) 16
Bse8I GATNNNNATC 1 cut(s) 658
BseCI ATCGAT 1 cut(s) 106
BseGI GGATG 1 cut(s) 430
BseJI GATNNNNATC 1 cut(s) 658
BseMI GCAATG 1 cut(s) 16
BseMII CTCAG 3 cut(s) 165, 792, 836
BseNI ACTGG 2 cut(s) 304, 857
BseRI GAGGAG 1 cut(s) 191
BseXI GCAGC 2 cut(s) 630, 717
BseYI CCCAGC 2 cut(s) 133, 701
Bsh1285I CGRYCG 2 cut(s) 110, 746
BshVI ATCGAT 1 cut(s) 106
BsiEI CGRYCG 2 cut(s) 110, 746
BsiHKAI GWGCWC 1 cut(s) 188
Bsp119I TTCGAA 1 cut(s) 538
Bsp1286I GDGCHC 1 cut(s) 188
Bsp143I GATC 6 cut(s) 107, 216, 457, 607, 732, 870
BspACI CCGC 2 cut(s) 58, 82
BspCNI CTCAG 3 cut(s) 166, 791, 835
BspDI ATCGAT 1 cut(s) 106
BspMI ACCTGC 1 cut(s) 396
BspPI GGATC 1 cut(s) 465
BspT104I TTCGAA 1 cut(s) 538
BsrDI GCAATG 1 cut(s) 16
BsrI ACTGG 2 cut(s) 304, 857
BssMI GATC 6 cut(s) 107, 216, 457, 607, 732, 870
BssNAI GTATAC 2 cut(s) 297, 717
Bst1107I GTATAC 2 cut(s) 297, 717
Bst6I CTCTTC 1 cut(s) 200
BstBI TTCGAA 1 cut(s) 538
BstDEI CTNAG 3 cut(s) 174, 778, 822
BstF5I GGATG 1 cut(s) 430
BstKTI GATC 6 cut(s) 110, 219, 460, 610, 735, 873
BstMBI GATC 6 cut(s) 107, 216, 457, 607, 732, 870
BstMCI CGRYCG 2 cut(s) 110, 746
BstV1I GCAGC 2 cut(s) 630, 717
BstV2I GAAGAC 1 cut(s) 414
BstZ17I GTATAC 2 cut(s) 297, 717
Bsu15I ATCGAT 1 cut(s) 106
BsuTUI ATCGAT 1 cut(s) 106
BtsCI GGATG 1 cut(s) 430
BtsIMutI CAGTG 1 cut(s) 864
BveI ACCTGC 1 cut(s) 396
ClaI ATCGAT 1 cut(s) 106
CseI GACGC 1 cut(s) 761
CviAII CATG 5 cut(s) 461, 479, 611, 722, 874
CviJI RGCY 9 cut(s) 14, 119, 133, 170, 186, 192, 375, 643, 777
CviKI_1 RGCY 9 cut(s) 14, 119, 133, 170, 186, 192, 375, 643, 777
DdeI CTNAG 3 cut(s) 174, 778, 822
DpnI GATC 6 cut(s) 109, 218, 459, 609, 734, 872
DpnII GATC 6 cut(s) 107, 216, 457, 607, 732, 870
Eam1104I CTCTTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 200
Ecl136II GAGCTC 1 cut(s) 186
Eco24I GRGCYC 1 cut(s) 188
Eco32I GATATC 1 cut(s) 523
Eco53kI GAGCTC 1 cut(s) 186
Eco57I CTGAAG 1 cut(s) 528
EcoICRI GAGCTC 1 cut(s) 186
EcoRI GAATTC 1 cut(s) 551
EcoRV GATATC 1 cut(s) 523
EcoT22I ATGCAT 2 cut(s) 604, 625
EcoT38I GRGCYC 1 cut(s) 188
FaeI CATG 5 cut(s) 464, 482, 614, 725, 877
FalI AAGNNNNNCTT 2 cut(s) 396, 428
FatI CATG 5 cut(s) 460, 478, 610, 721, 873
FauI CCCGC 2 cut(s) 65, 89
FauNDI CATATG 1 cut(s) 230
FbaI TGATCA 2 cut(s) 607, 732
FblI GTMKAC 2 cut(s) 296, 716
Fnu4HI GCNGC 2 cut(s) 644, 706
FokI GGATG 1 cut(s) 417
FriOI GRGCYC 1 cut(s) 188
Fsp4HI GCNGC 2 cut(s) 644, 706
GluI GCNGC 2 cut(s) 644, 706
GsaI CCCAGC 2 cut(s) 137, 705
HgaI GACGC 1 cut(s) 761
Hin1II CATG 5 cut(s) 464, 482, 614, 725, 877
HinfI GANTC 3 cut(s) 148, 503, 654
Hpy166II GTNNAC 2 cut(s) 297, 717
Hpy188I TCNGA 9 cut(s) 175, 262, 508, 582, 607, 737, 773, 781, 825
Hpy188III TCNNGA 3 cut(s) 362, 397, 811
Hpy8I GTNNAC 2 cut(s) 297, 717
HpyAV CCTTC 4 cut(s) 102, 241, 598, 632
HpyCH4IV ACGT 1 cut(s) 343
HpyCH4V TGCA 4 cut(s) 202, 329, 602, 623
HpyF3I CTNAG 3 cut(s) 174, 778, 822
HpySE526I ACGT 1 cut(s) 343
Hsp92II CATG 5 cut(s) 464, 482, 614, 725, 877
Ksp22I TGATCA 2 cut(s) 607, 732
Kzo9I GATC 6 cut(s) 107, 216, 457, 607, 732, 870
LmnI GCTCC 3 cut(s) 26, 116, 178
Lsp1109I GCAGC 2 cut(s) 630, 717
LweI GCATC 3 cut(s) 439, 610, 611
MaeII ACGT 1 cut(s) 343
MalI GATC 6 cut(s) 109, 218, 459, 609, 734, 872
MboI GATC 6 cut(s) 107, 216, 457, 607, 732, 870
MboII GAAGA 6 cut(s) 217, 222, 281, 419, 527, 629
MhlI GDGCHC 1 cut(s) 188
MluCI AATT 6 cut(s) 62, 196, 482, 551, 691, 849
MnlI CCTC 6 cut(s) 132, 169, 244, 259, 311, 541
Mph1103I ATGCAT 2 cut(s) 604, 625
MseI TTAA 1 cut(s) 696
NdeI CATATG 1 cut(s) 230
NdeII GATC 6 cut(s) 107, 216, 457, 607, 732, 870
NlaIII CATG 5 cut(s) 464, 482, 614, 725, 877
NsiI ATGCAT 2 cut(s) 604, 625
NspV TTCGAA 1 cut(s) 538
PfeI GAWTC 3 cut(s) 148, 503, 654
PkrI GCNGC 2 cut(s) 645, 707
Ple19I CGATCG 1 cut(s) 110
Psp124BI GAGCTC 1 cut(s) 188
PspFI CCCAGC 2 cut(s) 133, 701
PvuI CGATCG 1 cut(s) 110
SacI GAGCTC 1 cut(s) 188
SaqAI TTAA 1 cut(s) 696
SatI GCNGC 2 cut(s) 644, 706
Sau3AI GATC 6 cut(s) 107, 216, 457, 607, 732, 870
SduI GDGCHC 1 cut(s) 188
SetI ASST 9 cut(s) 16, 121, 188, 346, 377, 390, 414, 688, 779
SfaNI GCATC 3 cut(s) 439, 610, 611
SfuI TTCGAA 1 cut(s) 538
SmlI CTYRAG 3 cut(s) 187, 452, 681
SmoI CTYRAG 3 cut(s) 187, 452, 681
Sse9I AATT 6 cut(s) 62, 196, 482, 551, 691, 849
SsiI CCGC 2 cut(s) 58, 82
SstI GAGCTC 1 cut(s) 188
TaiI ACGT 1 cut(s) 346
TaqI TCGA 6 cut(s) 106, 110, 222, 245, 538, 810
TaqII GACCGA 1 cut(s) 732
TasI AATT 6 cut(s) 62, 196, 482, 551, 691, 849
TfiI GAWTC 3 cut(s) 148, 503, 654
Tru1I TTAA 1 cut(s) 696
Tru9I TTAA 1 cut(s) 696
TscAI CASTG 1 cut(s) 864
TseI GCWGC 2 cut(s) 643, 705
TspDTI ATGAA 2 cut(s) 495, 516
TspRI CASTG 1 cut(s) 864
XapI RAATTY 2 cut(s) 551, 691
XmiI GTMKAC 2 cut(s) 296, 716
Zsp2I ATGCAT 2 cut(s) 604, 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.