RLG00000003852

Stress responsive A/B Barrel Domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0010456
Physical Location & Seq
Forward (+)
53554272 .. 53556757
2486 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003852

Sequence Viewer

Length: 879 bp
ATGCTCATTCAAGCTCATTGCTCCACACTCTCTCCTGTTTCTCTCACAAACACCATCCGCCAATTCCCTATCATCTCCCGCCCTGCCCCTTTTAATGTGTATCGATCGAATGGAGCTGTGAGTTCGTGGTTGGGGAGGAAAAAGAATCGGGGACTGATGATAGTTTCGGCTTCTGAGGAGCAGAGCTCAAGCCCCAATTTGCAGAAGAGAAGAAAGATCATCGAACACATATGTCTGCTCAAATCGAAGGAGGATTTATCTGATGAGGAAGAGAAGGATATGCTGGATTATCTGTATACAACCCAGTATCAAATGAGAGGCATTGTTGCAATATCATTAGGATGTATCGGTAATCAAAATCCCGACAAGTATAGCTACGCTTTCTACTTGCGTTTCCAGAGAAAAGAAGACCTTGTAAAGTTTTACCAGCATCCTTTCTACTTGGGAGTTCTCAAGGATCATGTATCGCCTTACTGCCATGAATTGCTAAATGTAGATTATGAATCTGAAGTAGAAGATGATATCCTTCCTATATTTCGAAAAGGAGAGGAATTCAACTTTGGTGTGGAGTTTGTGCTTCTGATTTCCTTCGTCGATAATGCATCTGATCATGTGGAAGATGCATTGGTTTCTTTGGAAGGGCTGCTGATGGGATTCCAATCCTTGATTGTCCAATCTACTCAAGGTTTGTTTGAACTAACAGCCATCATGCTACTGGCAGAATTTATGTTTTCTCTTATTCTATCTTTTGACGCTTTTGAGATATTTTTCGGAAGCTCAGAATACAAAGACTTATGGAAGTCAAAGTTCGAGAAAATCACTCAGAAAACACTTTCTGTCCATTTTCTAATTCAACCAGTGGGTAGTGAGATCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dabb

Protein Analysis

293

Amino Acids

33.58

Weight (kDa)

5.24

Isoelectric Point (pI)

48.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dabb PF07876 74 - 168 6.8e-10 Stress responsive A/B Barrel Domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 296
AciI CCGC 2 cut(s) 58, 79
AclWI GGATC 1 cut(s) 465
AcsI RAATTY 2 cut(s) 551, 722
AcuI CTGAAG 1 cut(s) 528
AgsI TTSAA 4 cut(s) 11, 556, 695, 854
AjuI GAANNNNNNNTTGG 2 cut(s) 543, 575
AluBI AGCT 5 cut(s) 14, 116, 186, 375, 777
AluI AGCT 5 cut(s) 14, 116, 186, 375, 777
Alw21I GWGCWC 1 cut(s) 188
AlwI GGATC 1 cut(s) 465
ApeKI GCWGC 1 cut(s) 643
ApoI RAATTY 2 cut(s) 551, 722
AsuII TTCGAA 1 cut(s) 538
BanII GRGCYC 1 cut(s) 188
BbsI GAAGAC 1 cut(s) 414
Bbv12I GWGCWC 1 cut(s) 188
BbvI GCAGC 1 cut(s) 630
BccI CCATC 3 cut(s) 62, 643, 713
BclI TGATCA 1 cut(s) 607
BisI GCNGC 1 cut(s) 644
BlsI GCNGC 1 cut(s) 645
BmrI ACTGGG 1 cut(s) 298
BmsI GCATC 3 cut(s) 439, 610, 611
BmuI ACTGGG 1 cut(s) 298
BpiI GAAGAC 1 cut(s) 414
BplI GAGNNNNNCTC 2 cut(s) 170, 202
Bpu14I TTCGAA 1 cut(s) 538
BpuEI CTTGAG 3 cut(s) 172, 437, 666
Bsa29I ATCGAT 1 cut(s) 103
BsaBI GATNNNNATC 1 cut(s) 658
BsaXI ACNNNNNCTCC 2 cut(s) 16, 46
Bse1I ACTGG 3 cut(s) 304, 720, 857
Bse3DI GCAATG 1 cut(s) 16
Bse8I GATNNNNATC 1 cut(s) 658
BseCI ATCGAT 1 cut(s) 103
BseGI GGATG 3 cut(s) 54, 347, 430
BseJI GATNNNNATC 1 cut(s) 658
BseMI GCAATG 1 cut(s) 16
BseMII CTCAG 3 cut(s) 165, 792, 836
BseNI ACTGG 3 cut(s) 304, 720, 857
BseRI GAGGAG 1 cut(s) 191
BseXI GCAGC 1 cut(s) 630
Bsh1285I CGRYCG 1 cut(s) 107
BshVI ATCGAT 1 cut(s) 103
BsiEI CGRYCG 1 cut(s) 107
BsiHKAI GWGCWC 1 cut(s) 188
BslFI GGGAC 1 cut(s) 165
BsmFI GGGAC 1 cut(s) 165
Bsp119I TTCGAA 1 cut(s) 538
Bsp1286I GDGCHC 1 cut(s) 188
Bsp143I GATC 5 cut(s) 104, 216, 457, 607, 870
BspACI CCGC 2 cut(s) 58, 79
BspCNI CTCAG 3 cut(s) 166, 791, 835
BspDI ATCGAT 1 cut(s) 103
BspPI GGATC 1 cut(s) 465
BspT104I TTCGAA 1 cut(s) 538
BsrDI GCAATG 1 cut(s) 16
BsrI ACTGG 3 cut(s) 304, 720, 857
BssMI GATC 5 cut(s) 104, 216, 457, 607, 870
BssNAI GTATAC 1 cut(s) 297
Bst1107I GTATAC 1 cut(s) 297
Bst6I CTCTTC 2 cut(s) 200, 264
BstBI TTCGAA 1 cut(s) 538
BstDEI CTNAG 3 cut(s) 174, 778, 822
BstF5I GGATG 3 cut(s) 54, 347, 430
BstKTI GATC 5 cut(s) 107, 219, 460, 610, 873
BstMBI GATC 5 cut(s) 104, 216, 457, 607, 870
BstMCI CGRYCG 1 cut(s) 107
BstV1I GCAGC 1 cut(s) 630
BstV2I GAAGAC 1 cut(s) 414
BstZ17I GTATAC 1 cut(s) 297
Bsu15I ATCGAT 1 cut(s) 103
BsuTUI ATCGAT 1 cut(s) 103
BtsCI GGATG 3 cut(s) 54, 347, 430
BtsIMutI CAGTG 1 cut(s) 864
ClaI ATCGAT 1 cut(s) 103
CseI GACGC 1 cut(s) 761
CviAII CATG 5 cut(s) 461, 479, 611, 709, 874
CviJI RGCY 9 cut(s) 14, 116, 170, 186, 192, 375, 643, 704, 777
CviKI_1 RGCY 9 cut(s) 14, 116, 170, 186, 192, 375, 643, 704, 777
DdeI CTNAG 3 cut(s) 174, 778, 822
DpnI GATC 5 cut(s) 106, 218, 459, 609, 872
DpnII GATC 5 cut(s) 104, 216, 457, 607, 870
Eam1104I CTCTTC 2 cut(s) 200, 264
EarI CTCTTC 2 cut(s) 200, 264
EciI GGCGGA 1 cut(s) 47
Ecl136II GAGCTC 1 cut(s) 186
Eco24I GRGCYC 1 cut(s) 188
Eco32I GATATC 1 cut(s) 523
Eco53kI GAGCTC 1 cut(s) 186
Eco57I CTGAAG 1 cut(s) 528
EcoICRI GAGCTC 1 cut(s) 186
EcoRI GAATTC 1 cut(s) 551
EcoRV GATATC 1 cut(s) 523
EcoT22I ATGCAT 2 cut(s) 604, 625
EcoT38I GRGCYC 1 cut(s) 188
FaeI CATG 5 cut(s) 464, 482, 614, 712, 877
FalI AAGNNNNNCTT 2 cut(s) 396, 428
FaqI GGGAC 1 cut(s) 165
FatI CATG 5 cut(s) 460, 478, 610, 708, 873
FauI CCCGC 1 cut(s) 86
FauNDI CATATG 1 cut(s) 230
FbaI TGATCA 1 cut(s) 607
FblI GTMKAC 1 cut(s) 296
Fnu4HI GCNGC 1 cut(s) 644
FokI GGATG 3 cut(s) 41, 354, 417
FriOI GRGCYC 1 cut(s) 188
Fsp4HI GCNGC 1 cut(s) 644
GluI GCNGC 1 cut(s) 644
HgaI GACGC 1 cut(s) 761
Hin1II CATG 5 cut(s) 464, 482, 614, 712, 877
HinfI GANTC 3 cut(s) 145, 503, 654
Hpy166II GTNNAC 1 cut(s) 297
Hpy188I TCNGA 8 cut(s) 175, 262, 508, 582, 607, 773, 781, 825
Hpy188III TCNNGA 3 cut(s) 362, 397, 811
Hpy8I GTNNAC 1 cut(s) 297
Hpy99I CGWCG 1 cut(s) 596
HpyAV CCTTC 5 cut(s) 241, 268, 536, 598, 632
HpyCH4V TGCA 4 cut(s) 202, 329, 602, 623
HpyF3I CTNAG 3 cut(s) 174, 778, 822
Hsp92II CATG 5 cut(s) 464, 482, 614, 712, 877
Ksp22I TGATCA 1 cut(s) 607
Kzo9I GATC 5 cut(s) 104, 216, 457, 607, 870
LmnI GCTCC 3 cut(s) 26, 113, 178
LpnPI CCDG 8 cut(s) 48, 96, 269, 317, 410, 440, 701, 870
Lsp1109I GCAGC 1 cut(s) 630
LweI GCATC 3 cut(s) 439, 610, 611
MalI GATC 5 cut(s) 106, 218, 459, 609, 872
MboI GATC 5 cut(s) 104, 216, 457, 607, 870
MboII GAAGA 6 cut(s) 217, 222, 281, 419, 527, 629
MhlI GDGCHC 1 cut(s) 188
MluCI AATT 6 cut(s) 62, 196, 482, 551, 722, 849
MnlI CCTC 6 cut(s) 129, 169, 244, 259, 311, 541
Mph1103I ATGCAT 2 cut(s) 604, 625
MseI TTAA 1 cut(s) 93
MslI CAYNNNNRTG 1 cut(s) 340
NdeI CATATG 1 cut(s) 230
NdeII GATC 5 cut(s) 104, 216, 457, 607, 870
NlaIII CATG 5 cut(s) 464, 482, 614, 712, 877
NsiI ATGCAT 2 cut(s) 604, 625
NspV TTCGAA 1 cut(s) 538
PfeI GAWTC 3 cut(s) 145, 503, 654
PkrI GCNGC 1 cut(s) 645
Ple19I CGATCG 1 cut(s) 107
Psp124BI GAGCTC 1 cut(s) 188
PvuI CGATCG 1 cut(s) 107
RseI CAYNNNNRTG 1 cut(s) 340
SacI GAGCTC 1 cut(s) 188
SaqAI TTAA 1 cut(s) 93
SatI GCNGC 1 cut(s) 644
Sau3AI GATC 5 cut(s) 104, 216, 457, 607, 870
SduI GDGCHC 1 cut(s) 188
SetI ASST 7 cut(s) 16, 118, 188, 377, 414, 688, 779
SfaNI GCATC 3 cut(s) 439, 610, 611
SfuI TTCGAA 1 cut(s) 538
SmiMI CAYNNNNRTG 1 cut(s) 340
SmlI CTYRAG 3 cut(s) 187, 452, 681
SmoI CTYRAG 3 cut(s) 187, 452, 681
Sse9I AATT 6 cut(s) 62, 196, 482, 551, 722, 849
SsiI CCGC 2 cut(s) 58, 79
SstI GAGCTC 1 cut(s) 188
TaqI TCGA 7 cut(s) 103, 107, 222, 245, 538, 594, 810
TasI AATT 6 cut(s) 62, 196, 482, 551, 722, 849
TfiI GAWTC 3 cut(s) 145, 503, 654
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TscAI CASTG 1 cut(s) 864
TseI GCWGC 1 cut(s) 643
TspDTI ATGAA 2 cut(s) 495, 516
TspRI CASTG 1 cut(s) 864
XapI RAATTY 2 cut(s) 551, 722
XcmI CCANNNNNNNNNTGG 1 cut(s) 712
XmiI GTMKAC 1 cut(s) 296
Zsp2I ATGCAT 2 cut(s) 604, 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.