Rh7BG175900

Stress responsive A/B Barrel Domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0010456
Physical Location & Seq
Reverse (-)
13775146 .. 13778929
3784 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG175900.1

Sequence Viewer

Length: 1017 bp
ATGCTCATTCAAGCTCATTGCTCCACACTCACTCCTGTTTCTCTCACAAACACTACCCGCCAATTCCCTATCATCTCCCGCCCTGCCCCTTTTAATGTGGATCGATCGAATGGAGCTGCGAGTTCGTGGTTGGGGAGGAAAAAGAATCGGGGAGTGATAGTTTCGGCTTCTGAGGAGCAGAGCTCGAGCCCCAATTTGCAGAAGAGAAGAAAGATCATCGAACACATATGTCTGCTCAAATCAAAGGAGGATTTATCTGATGAGGAAGAGAAGGATATGCTGGATTATCTGTATACAACCCAGTATCAAATGAGAGGCATTGTTGCAATATCATTAGGACGTATCGGTAATCAAAATCCCGACAAGTATAGCTACGCTTTCTACCTGCGTTTCCAGAGAAAAGAAGACCTTGTAAAGTTTTACCAGCATCCTTTCTACTTGGGAGTTCTCAAGGATCATGTATCGCCTTACTGCCATGAATTGCTAAATGTAGATTATGAATCTGAAGTAGAAGATGATATCCTTCCTATATTTCGAAAAGGAGAGGAATTCAACTTTGGTGTGGAGTTTGTGCTTCTGATTTCCTTCGTCGATAATGCATCTGATCATGCGGAAGATGCATTGGTTTCTTTGGAAGGACTGCTGATGGGATTCCCATCCTTGATTGTGCAATCTACTCAAGGTGTGAATTTTAACCCCAGCAGCAAGGAGTATACACATGGAGTAGTGATCAGATTTCGGTCGTTTGACTCTTTTGAGATTTTTTTCGGAAGCTCAGAATACAAAGACGTAAGTAGCCAATATGTTGTTCTGCTTATTTATGTAAATTCTATTTGCCTATCCCCCCAACCCACCAACTTCACTGTGGCCTTGCTTTTGAGACCTTGCACTTTAATCAATATTGATATGTTAGATTCTCATCTAGAACGTAGAGATTCCATGATAATATTAGTGTTTCTAATGTTTGAGCTATATGTTCTTAGCTTTTTTCAGCATTTTTCTTATACCATCTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dabb

Protein Analysis

338

Amino Acids

38.88

Weight (kDa)

5.41

Isoelectric Point (pI)

50.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dabb PF07876 73 - 167 1.3e-10 Stress responsive A/B Barrel Domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 393
AccI GTMKAC 2 cut(s) 293, 713
AciI CCGC 3 cut(s) 58, 79, 611
AclWI GGATC 2 cut(s) 108, 462
AcsI RAATTY 3 cut(s) 548, 688, 826
AcuI CTGAAG 1 cut(s) 525
AgsI TTSAA 2 cut(s) 11, 553
AjuI GAANNNNNNNTTGG 4 cut(s) 540, 572, 792, 824
AluBI AGCT 7 cut(s) 14, 116, 183, 372, 774, 970, 984
AluI AGCT 7 cut(s) 14, 116, 183, 372, 774, 970, 984
Alw21I GWGCWC 1 cut(s) 185
Alw26I GTCTC 1 cut(s) 874
AlwI GGATC 2 cut(s) 108, 462
Ama87I CYCGRG 1 cut(s) 184
AoxI GGCC 1 cut(s) 867
ApeKI GCWGC 2 cut(s) 116, 702
ApoI RAATTY 3 cut(s) 548, 688, 826
AsuII TTCGAA 1 cut(s) 535
AvaI CYCGRG 1 cut(s) 184
BanII GRGCYC 2 cut(s) 185, 191
BbsI GAAGAC 1 cut(s) 411
Bbv12I GWGCWC 1 cut(s) 185
BbvI GCAGC 2 cut(s) 103, 714
BccI CCATC 3 cut(s) 640, 664, 1016
BclI TGATCA 2 cut(s) 604, 729
BcoDI GTCTC 1 cut(s) 874
BfaI CTAG 1 cut(s) 923
BfuAI ACCTGC 1 cut(s) 393
BisI GCNGC 2 cut(s) 117, 703
BlsI GCNGC 2 cut(s) 118, 704
BmeT110I CYCGRG 1 cut(s) 184
BmrI ACTGGG 1 cut(s) 295
BmsI GCATC 3 cut(s) 436, 607, 608
BmuI ACTGGG 1 cut(s) 295
BpiI GAAGAC 1 cut(s) 411
BplI GAGNNNNNCTC 2 cut(s) 167, 199
Bpu14I TTCGAA 1 cut(s) 535
BpuEI CTTGAG 2 cut(s) 434, 663
Bsa29I ATCGAT 1 cut(s) 103
BsaBI GATNNNNATC 2 cut(s) 655, 918
BsaI GGTCTC 1 cut(s) 874
BsaXI ACNNNNNCTCC 4 cut(s) 16, 46, 144, 174
Bse1I ACTGG 1 cut(s) 301
Bse3DI GCAATG 1 cut(s) 16
Bse8I GATNNNNATC 2 cut(s) 655, 918
BseCI ATCGAT 1 cut(s) 103
BseGI GGATG 2 cut(s) 427, 656
BseJI GATNNNNATC 2 cut(s) 655, 918
BseMI GCAATG 1 cut(s) 16
BseMII CTCAG 2 cut(s) 162, 789
BseNI ACTGG 1 cut(s) 301
BseRI GAGGAG 1 cut(s) 188
BseXI GCAGC 2 cut(s) 103, 714
BseYI CCCAGC 1 cut(s) 698
Bsh1285I CGRYCG 2 cut(s) 107, 743
BshFI GGCC 1 cut(s) 869
BshVI ATCGAT 1 cut(s) 103
BsiEI CGRYCG 2 cut(s) 107, 743
BsiHKAI GWGCWC 1 cut(s) 185
BsiHKCI CYCGRG 1 cut(s) 184
BsmAI GTCTC 1 cut(s) 874
BsnI GGCC 1 cut(s) 869
Bso31I GGTCTC 1 cut(s) 874
BsoBI CYCGRG 1 cut(s) 184
Bsp119I TTCGAA 1 cut(s) 535
Bsp1286I GDGCHC 2 cut(s) 185, 191
Bsp143I GATC 6 cut(s) 100, 104, 213, 454, 604, 729
BspACI CCGC 3 cut(s) 58, 79, 611
BspANI GGCC 1 cut(s) 869
BspCNI CTCAG 2 cut(s) 163, 788
BspDI ATCGAT 1 cut(s) 103
BspMI ACCTGC 1 cut(s) 393
BspPI GGATC 2 cut(s) 108, 462
BspT104I TTCGAA 1 cut(s) 535
BspTNI GGTCTC 1 cut(s) 874
BsrDI GCAATG 1 cut(s) 16
BsrI ACTGG 1 cut(s) 301
BssMI GATC 6 cut(s) 100, 104, 213, 454, 604, 729
BssNAI GTATAC 2 cut(s) 294, 714
Bst1107I GTATAC 2 cut(s) 294, 714
Bst4CI ACNGT 1 cut(s) 865
Bst6I CTCTTC 2 cut(s) 197, 261
BstBI TTCGAA 1 cut(s) 535
BstDEI CTNAG 3 cut(s) 171, 775, 980
BstF5I GGATG 2 cut(s) 427, 656
BstKTI GATC 6 cut(s) 103, 107, 216, 457, 607, 732
BstMAI GTCTC 1 cut(s) 874
BstMBI GATC 6 cut(s) 100, 104, 213, 454, 604, 729
BstMCI CGRYCG 2 cut(s) 107, 743
BstMWI GCNNNNNNNGC 1 cut(s) 617
BstV1I GCAGC 2 cut(s) 103, 714
BstV2I GAAGAC 1 cut(s) 411
BstZ17I GTATAC 2 cut(s) 294, 714
Bsu15I ATCGAT 1 cut(s) 103
BsuRI GGCC 1 cut(s) 869
BsuTUI ATCGAT 1 cut(s) 103
BtsCI GGATG 2 cut(s) 427, 656
BtsIMutI CAGTG 1 cut(s) 861
BveI ACCTGC 1 cut(s) 393
ClaI ATCGAT 1 cut(s) 103
CviAII CATG 5 cut(s) 458, 476, 608, 719, 940
DdeI CTNAG 3 cut(s) 171, 775, 980
DpnI GATC 6 cut(s) 102, 106, 215, 456, 606, 731
DpnII GATC 6 cut(s) 100, 104, 213, 454, 604, 729
Eam1104I CTCTTC 2 cut(s) 197, 261
EarI CTCTTC 2 cut(s) 197, 261
Ecl136II GAGCTC 1 cut(s) 183
Eco24I GRGCYC 2 cut(s) 185, 191
Eco31I GGTCTC 1 cut(s) 874
Eco32I GATATC 1 cut(s) 520
Eco53kI GAGCTC 1 cut(s) 183
Eco57I CTGAAG 1 cut(s) 525
Eco88I CYCGRG 1 cut(s) 184
EcoICRI GAGCTC 1 cut(s) 183
EcoRI GAATTC 1 cut(s) 548
EcoRV GATATC 1 cut(s) 520
EcoT22I ATGCAT 2 cut(s) 601, 622
EcoT38I GRGCYC 2 cut(s) 185, 191
FaeI CATG 5 cut(s) 461, 479, 611, 722, 943
FalI AAGNNNNNCTT 2 cut(s) 393, 425
FatI CATG 5 cut(s) 457, 475, 607, 718, 939
FauI CCCGC 2 cut(s) 65, 86
FauNDI CATATG 1 cut(s) 227
FbaI TGATCA 2 cut(s) 604, 729
FblI GTMKAC 2 cut(s) 293, 713
Fnu4HI GCNGC 2 cut(s) 117, 703
FokI GGATG 2 cut(s) 414, 643
FriOI GRGCYC 2 cut(s) 185, 191
Fsp4HI GCNGC 2 cut(s) 117, 703
FspBI CTAG 1 cut(s) 923
GluI GCNGC 2 cut(s) 117, 703
GsaI CCCAGC 1 cut(s) 702
HaeIII GGCC 1 cut(s) 869
Hin1II CATG 5 cut(s) 461, 479, 611, 722, 943
HinfI GANTC 6 cut(s) 145, 500, 651, 749, 914, 935
Hpy166II GTNNAC 2 cut(s) 294, 714
Hpy188I TCNGA 8 cut(s) 172, 259, 505, 579, 604, 734, 770, 778
Hpy188III TCNNGA 3 cut(s) 359, 394, 923
Hpy8I GTNNAC 2 cut(s) 294, 714
Hpy99I CGWCG 1 cut(s) 593
HpyAV CCTTC 4 cut(s) 265, 533, 595, 629
HpyCH4III ACNGT 1 cut(s) 865
HpyCH4IV ACGT 3 cut(s) 340, 789, 928
HpyCH4V TGCA 6 cut(s) 199, 326, 599, 620, 670, 888
HpyF10VI GCNNNNNNNGC 1 cut(s) 617
HpyF3I CTNAG 3 cut(s) 171, 775, 980
HpySE526I ACGT 3 cut(s) 340, 789, 928
Hsp92II CATG 5 cut(s) 461, 479, 611, 722, 943
Ksp22I TGATCA 2 cut(s) 604, 729
Kzo9I GATC 6 cut(s) 100, 104, 213, 454, 604, 729
LmnI GCTCC 3 cut(s) 26, 113, 175
LpnPI CCDG 8 cut(s) 48, 96, 266, 314, 398, 407, 437, 712
Lsp1109I GCAGC 2 cut(s) 103, 714
LweI GCATC 3 cut(s) 436, 607, 608
MaeI CTAG 1 cut(s) 923
MaeII ACGT 3 cut(s) 340, 789, 928
MalI GATC 6 cut(s) 102, 106, 215, 456, 606, 731
MboI GATC 6 cut(s) 100, 104, 213, 454, 604, 729
MboII GAAGA 6 cut(s) 214, 219, 278, 416, 524, 626
MhlI GDGCHC 2 cut(s) 185, 191
MluCI AATT 6 cut(s) 62, 193, 479, 548, 688, 826
MlyI GAGTC 1 cut(s) 743
MnlI CCTC 6 cut(s) 129, 166, 241, 256, 308, 538
Mph1103I ATGCAT 2 cut(s) 601, 622
MseI TTAA 3 cut(s) 93, 693, 893
MwoI GCNNNNNNNGC 1 cut(s) 617
NdeI CATATG 1 cut(s) 227
NdeII GATC 6 cut(s) 100, 104, 213, 454, 604, 729
NlaIII CATG 5 cut(s) 461, 479, 611, 722, 943
NsiI ATGCAT 2 cut(s) 601, 622
NspV TTCGAA 1 cut(s) 535
PaeR7I CTCGAG 1 cut(s) 184
PfeI GAWTC 5 cut(s) 145, 500, 651, 914, 935
PkrI GCNGC 2 cut(s) 118, 704
Ple19I CGATCG 1 cut(s) 107
PleI GAGTC 1 cut(s) 743
PpsI GAGTC 1 cut(s) 743
Psp124BI GAGCTC 1 cut(s) 185
PspFI CCCAGC 1 cut(s) 698
PspXI VCTCGAGB 1 cut(s) 184
PvuI CGATCG 1 cut(s) 107
SacI GAGCTC 1 cut(s) 185
SaqAI TTAA 3 cut(s) 93, 693, 893
SatI GCNGC 2 cut(s) 117, 703
Sau3AI GATC 6 cut(s) 100, 104, 213, 454, 604, 729
SchI GAGTC 1 cut(s) 743
SduI GDGCHC 2 cut(s) 185, 191
SfaNI GCATC 3 cut(s) 436, 607, 608
Sfr274I CTCGAG 1 cut(s) 184
SfuI TTCGAA 1 cut(s) 535
SlaI CTCGAG 1 cut(s) 184
SmlI CTYRAG 3 cut(s) 184, 449, 678
SmoI CTYRAG 3 cut(s) 184, 449, 678
Sse9I AATT 6 cut(s) 62, 193, 479, 548, 688, 826
SsiI CCGC 3 cut(s) 58, 79, 611
SspI AATATT 2 cut(s) 901, 948
SspMI CTAG 1 cut(s) 923
SstI GAGCTC 1 cut(s) 185
TaaI ACNGT 1 cut(s) 865
TaiI ACGT 3 cut(s) 343, 792, 931
TaqI TCGA 6 cut(s) 103, 107, 185, 219, 535, 591
TaqII GACCGA 1 cut(s) 729
TasI AATT 6 cut(s) 62, 193, 479, 548, 688, 826
TfiI GAWTC 5 cut(s) 145, 500, 651, 914, 935
Tru1I TTAA 3 cut(s) 93, 693, 893
Tru9I TTAA 3 cut(s) 93, 693, 893
TscAI CASTG 1 cut(s) 868
TseI GCWGC 2 cut(s) 116, 702
TspDTI ATGAA 2 cut(s) 492, 513
TspRI CASTG 1 cut(s) 868
XapI RAATTY 3 cut(s) 548, 688, 826
XbaI TCTAGA 1 cut(s) 922
XcmI CCANNNNNNNNNTGG 1 cut(s) 862
XhoI CTCGAG 1 cut(s) 184
XmiI GTMKAC 2 cut(s) 293, 713
XspI CTAG 1 cut(s) 923
Zsp2I ATGCAT 2 cut(s) 601, 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.