Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009374.1

Orthogroup ID

OG0010456

Physical Location & Seq

Genomic Coordinates Forward (+)

3409 .. 5923

Gene Structure 2515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009374.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

atgctcattcaagctcattgctccacactctctcctgtttctctcacaaacactacccgccaattccctatcatctcccgccctgccccttctaatgtgtatcgatcgaatggagctgtgagttcgtggctggggaggaaaaagaaccggggagtgatagtttcggcttctgaggagcagagctcaagccccaatttgcagaagagaagaaggatcatcgaacacatatgtctgctcaaatcgaaggaggatttatctgatgaggaagagaaggatatgctggattatctgtacacaacccagtatcaaatgagaggcattgttgcaatatcattaggacgtatcggtaatcaaaatcccgacaagtatagctacgctttctacctgcgtttccagagaaaagaagaccttgtaaagttttaccagcatcctttctacttgggagttctcaaggatcatgtatcgccttactgccatgaattgctaaatgtagattatgaatctgaagtagaagatgatatcctgcctatatttcgaaaaggagaggaattcaactttggtgtggagtttgtgcttctgatttcctttgtcaataatgcatctgatcatgtggaagatgcattggtttctttggaagggctgctgatgggattccaatccttgattgtccaatctactcaaggtgtgaattttaaccccagcagcaaggagtatacacatggagtagtgatcagatttcggtcgtttgacgcttttgagatatttttcggaagctcagaatacaaagacttatggaagtcaaagttcgagaaaatcactcagaaaacactttctgtccattttctaattcaaccagtgggtagtgagatcatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dabb

Protein Analysis

291

Amino Acids

33.48

Weight (kDa)

6.09

Isoelectric Point (pI)

51.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32500 AT2G32500
fragaria_vesca	FvH4_5g01880
malus_domestica	MD06G1077000.v1.1
prunus_persica	Prupe.5G095100_v2.0.a1 Prupe.5G095100_v2.0.a1
pyrus_communis	pycom06g07460
rosa_chinensis	RchiOBHm_Chr7g0198641
rosa_laevigata	RLG00000003852
rosa_multiflora	Rmu_sc0000220.1_g000018 Rmu_sc0009374.1_g000002
rosa_roxburghii	Rroxscaffold_3G00257570
rosa_rugosa	Rorug07G0048600 Rorug07G0048700 Rorug07G0048800 Rorug07G0048800
rosa_samantha	Rh7AG172400 Rh7BG175900 Rh7CG181800 Rh7DG174700
rosa_wichuraiana	Rw7G015130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	393
AccI	GTMKAC	1 cut(s)	713
AciI	CCGC	2 cut(s)	58, 79
AclWI	GGATC	2 cut(s)	221, 462
AcsI	RAATTY	2 cut(s)	548, 688
AcuI	CTGAAG	1 cut(s)	525
AfaI	GTAC	1 cut(s)	293
AgsI	TTSAA	3 cut(s)	11, 553, 851
AjuI	GAANNNNNNNTTGG	2 cut(s)	540, 572
AluBI	AGCT	5 cut(s)	14, 116, 183, 372, 774
AluI	AGCT	5 cut(s)	14, 116, 183, 372, 774
Alw21I	GWGCWC	1 cut(s)	185
AlwI	GGATC	2 cut(s)	221, 462
ApeKI	GCWGC	2 cut(s)	640, 702
ApoI	RAATTY	2 cut(s)	548, 688
AsuC2I	CCSGG	1 cut(s)	149
AsuII	TTCGAA	1 cut(s)	535
BanII	GRGCYC	1 cut(s)	185
BbsI	GAAGAC	1 cut(s)	411
Bbv12I	GWGCWC	1 cut(s)	185
BbvI	GCAGC	2 cut(s)	627, 714
BccI	CCATC	1 cut(s)	640
BclI	TGATCA	2 cut(s)	604, 729
BcnI	CCSGG	1 cut(s)	149
BfuAI	ACCTGC	1 cut(s)	393
BisI	GCNGC	2 cut(s)	641, 703
BlsI	GCNGC	2 cut(s)	642, 704
Bme1390I	CCNGG	1 cut(s)	149
BmrFI	CCNGG	1 cut(s)	149
BmrI	ACTGGG	1 cut(s)	295
BmsI	GCATC	3 cut(s)	436, 607, 608
BmuI	ACTGGG	1 cut(s)	295
BpiI	GAAGAC	1 cut(s)	411
BplI	GAGNNNNNCTC	2 cut(s)	167, 199
Bpu14I	TTCGAA	1 cut(s)	535
BpuEI	CTTGAG	3 cut(s)	169, 434, 663
BpuMI	CCSGG	1 cut(s)	149
Bsa29I	ATCGAT	1 cut(s)	103
BsaBI	GATNNNNATC	1 cut(s)	655
BsaJI	CCNNGG	1 cut(s)	148
BsaXI	ACNNNNNCTCC	4 cut(s)	16, 46, 144, 174
Bse1I	ACTGG	2 cut(s)	301, 854
Bse3DI	GCAATG	1 cut(s)	16
Bse8I	GATNNNNATC	1 cut(s)	655
BseCI	ATCGAT	1 cut(s)	103
BseDI	CCNNGG	1 cut(s)	148
BseGI	GGATG	1 cut(s)	427
BseJI	GATNNNNATC	1 cut(s)	655
BseMI	GCAATG	1 cut(s)	16
BseMII	CTCAG	3 cut(s)	162, 789, 833
BseNI	ACTGG	2 cut(s)	301, 854
BseRI	GAGGAG	1 cut(s)	188
BseXI	GCAGC	2 cut(s)	627, 714
BseYI	CCCAGC	2 cut(s)	130, 698
Bsh1285I	CGRYCG	2 cut(s)	107, 743
BshVI	ATCGAT	1 cut(s)	103
BsiEI	CGRYCG	2 cut(s)	107, 743
BsiHKAI	GWGCWC	1 cut(s)	185
BsiSI	CCGG	1 cut(s)	148
Bsp119I	TTCGAA	1 cut(s)	535
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp1407I	TGTACA	1 cut(s)	291
Bsp143I	GATC	6 cut(s)	104, 213, 454, 604, 729, 867
BspACI	CCGC	2 cut(s)	58, 79
BspCNI	CTCAG	3 cut(s)	163, 788, 832
BspDI	ATCGAT	1 cut(s)	103
BspMI	ACCTGC	1 cut(s)	393
BspPI	GGATC	2 cut(s)	221, 462
BspT104I	TTCGAA	1 cut(s)	535
BsrDI	GCAATG	1 cut(s)	16
BsrGI	TGTACA	1 cut(s)	291
BsrI	ACTGG	2 cut(s)	301, 854
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	6 cut(s)	104, 213, 454, 604, 729, 867
BssNAI	GTATAC	1 cut(s)	714
Bst1107I	GTATAC	1 cut(s)	714
Bst6I	CTCTTC	2 cut(s)	197, 261
BstAUI	TGTACA	1 cut(s)	291
BstBI	TTCGAA	1 cut(s)	535
BstDEI	CTNAG	3 cut(s)	171, 775, 819
BstF5I	GGATG	1 cut(s)	427
BstKTI	GATC	6 cut(s)	107, 216, 457, 607, 732, 870
BstMBI	GATC	6 cut(s)	104, 213, 454, 604, 729, 867
BstMCI	CGRYCG	2 cut(s)	107, 743
BstSCI	CCNGG	1 cut(s)	147
BstV1I	GCAGC	2 cut(s)	627, 714
BstV2I	GAAGAC	1 cut(s)	411
BstZ17I	GTATAC	1 cut(s)	714
Bsu15I	ATCGAT	1 cut(s)	103
BsuTUI	ATCGAT	1 cut(s)	103
BtsCI	GGATG	1 cut(s)	427
BtsIMutI	CAGTG	1 cut(s)	861
BveI	ACCTGC	1 cut(s)	393
ClaI	ATCGAT	1 cut(s)	103
CseI	GACGC	1 cut(s)	758
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	5 cut(s)	458, 476, 608, 719, 871
CviJI	RGCY	9 cut(s)	14, 116, 130, 167, 183, 189, 372, 640, 774
CviKI_1	RGCY	9 cut(s)	14, 116, 130, 167, 183, 189, 372, 640, 774
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	3 cut(s)	171, 775, 819
DpnI	GATC	6 cut(s)	106, 215, 456, 606, 731, 869
DpnII	GATC	6 cut(s)	104, 213, 454, 604, 729, 867
Eam1104I	CTCTTC	2 cut(s)	197, 261
EarI	CTCTTC	2 cut(s)	197, 261
Ecl136II	GAGCTC	1 cut(s)	183
Eco24I	GRGCYC	1 cut(s)	185
Eco32I	GATATC	1 cut(s)	520
Eco53kI	GAGCTC	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	525
EcoICRI	GAGCTC	1 cut(s)	183
EcoRI	GAATTC	1 cut(s)	548
EcoRV	GATATC	1 cut(s)	520
EcoT22I	ATGCAT	2 cut(s)	601, 622
EcoT38I	GRGCYC	1 cut(s)	185
FaeI	CATG	5 cut(s)	461, 479, 611, 722, 874
FalI	AAGNNNNNCTT	2 cut(s)	393, 425
FatI	CATG	5 cut(s)	457, 475, 607, 718, 870
FauI	CCCGC	2 cut(s)	65, 86
FauNDI	CATATG	1 cut(s)	227
FbaI	TGATCA	2 cut(s)	604, 729
FblI	GTMKAC	1 cut(s)	713
Fnu4HI	GCNGC	2 cut(s)	641, 703
FokI	GGATG	1 cut(s)	414
FriOI	GRGCYC	1 cut(s)	185
Fsp4HI	GCNGC	2 cut(s)	641, 703
GluI	GCNGC	2 cut(s)	641, 703
GsaI	CCCAGC	2 cut(s)	134, 702
HapII	CCGG	1 cut(s)	148
HgaI	GACGC	1 cut(s)	758
Hin1II	CATG	5 cut(s)	461, 479, 611, 722, 874
HinfI	GANTC	2 cut(s)	500, 651
HpaII	CCGG	1 cut(s)	148
Hpy166II	GTNNAC	2 cut(s)	294, 714
Hpy188I	TCNGA	9 cut(s)	172, 259, 505, 579, 604, 734, 770, 778, 822
Hpy188III	TCNNGA	3 cut(s)	359, 394, 808
Hpy8I	GTNNAC	2 cut(s)	294, 714
HpyAV	CCTTC	5 cut(s)	99, 204, 238, 265, 629
HpyCH4IV	ACGT	1 cut(s)	340
HpyCH4V	TGCA	4 cut(s)	199, 326, 599, 620
HpyF3I	CTNAG	3 cut(s)	171, 775, 819
HpySE526I	ACGT	1 cut(s)	340
Hsp92II	CATG	5 cut(s)	461, 479, 611, 722, 874
Ksp22I	TGATCA	2 cut(s)	604, 729
Kzo9I	GATC	6 cut(s)	104, 213, 454, 604, 729, 867
LmnI	GCTCC	3 cut(s)	26, 113, 175
Lsp1109I	GCAGC	2 cut(s)	627, 714
LweI	GCATC	3 cut(s)	436, 607, 608
MaeII	ACGT	1 cut(s)	340
MalI	GATC	6 cut(s)	106, 215, 456, 606, 731, 869
MboI	GATC	6 cut(s)	104, 213, 454, 604, 729, 867
MboII	GAAGA	6 cut(s)	214, 219, 278, 416, 524, 626
MhlI	GDGCHC	1 cut(s)	185
MluCI	AATT	6 cut(s)	62, 193, 479, 548, 688, 846
MnlI	CCTC	6 cut(s)	129, 166, 241, 256, 308, 538
Mph1103I	ATGCAT	2 cut(s)	601, 622
MseI	TTAA	1 cut(s)	693
MspI	CCGG	1 cut(s)	148
MspR9I	CCNGG	1 cut(s)	149
NciI	CCSGG	1 cut(s)	149
NdeI	CATATG	1 cut(s)	227
NdeII	GATC	6 cut(s)	104, 213, 454, 604, 729, 867
NlaIII	CATG	5 cut(s)	461, 479, 611, 722, 874
NsiI	ATGCAT	2 cut(s)	601, 622
NspV	TTCGAA	1 cut(s)	535
PfeI	GAWTC	2 cut(s)	500, 651
PkrI	GCNGC	2 cut(s)	642, 704
Ple19I	CGATCG	1 cut(s)	107
Psp124BI	GAGCTC	1 cut(s)	185
PspFI	CCCAGC	2 cut(s)	130, 698
PvuI	CGATCG	1 cut(s)	107
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
SacI	GAGCTC	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	693
SatI	GCNGC	2 cut(s)	641, 703
Sau3AI	GATC	6 cut(s)	104, 213, 454, 604, 729, 867
ScrFI	CCNGG	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	9 cut(s)	16, 118, 185, 343, 374, 387, 411, 685, 776
SfaNI	GCATC	3 cut(s)	436, 607, 608
SfuI	TTCGAA	1 cut(s)	535
SmlI	CTYRAG	3 cut(s)	184, 449, 678
SmoI	CTYRAG	3 cut(s)	184, 449, 678
Sse9I	AATT	6 cut(s)	62, 193, 479, 548, 688, 846
SsiI	CCGC	2 cut(s)	58, 79
SstI	GAGCTC	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	147
TaiI	ACGT	1 cut(s)	343
TaqI	TCGA	6 cut(s)	103, 107, 219, 242, 535, 807
TaqII	GACCGA	1 cut(s)	729
TasI	AATT	6 cut(s)	62, 193, 479, 548, 688, 846
TatI	WGTACW	1 cut(s)	291
TfiI	GAWTC	2 cut(s)	500, 651
Tru1I	TTAA	1 cut(s)	693
Tru9I	TTAA	1 cut(s)	693
TscAI	CASTG	1 cut(s)	861
TseI	GCWGC	2 cut(s)	640, 702
TspDTI	ATGAA	2 cut(s)	492, 513
TspRI	CASTG	1 cut(s)	861
XapI	RAATTY	2 cut(s)	548, 688
XmiI	GTMKAC	1 cut(s)	713
Zsp2I	ATGCAT	2 cut(s)	601, 622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.