MD06G1077000.v1.1

Stress responsive A/B Barrel Domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0010456
Physical Location & Seq
Forward (+)
19075569 .. 19078379
2811 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1077000.v1.1.491

Sequence Viewer

Length: 876 bp
ATGCTCATTCAATCTCAGTGCTCCGTACTCTCTCCCATTCGCCTCACAAACCCCCGTCGCCGGTGCCTTCTCATTCCCCGCCCTGCCCCTTTTAACGTTTTCCGGTCGTACGGAGTTGTGAGAACATGGCTGGGGAAGAAAAAGAATGGGGGAGTGTTGGTTTCGGCTACGGAGGAGCAGAGCTCGAGCCTCAATGTGCAGAAGAAAAGGAAAATCGTGGAACACGTAAGCCTGCTCAAAGCGAAGCAGGATTTATCTGATGAAGAAGAGAAGGATATGCTGGATTATCTCTATACAACCCAGTATCAAATGCGAGGCATTCTCGCCATATCACTAGGACGTGTCTCTGATCAAAACCCTGACAAGTATACCCACGCTGTCTACATGCGCTTCCAGAGAAATGAAGACATTAGCAAGTTTTATGAGAACCCTTTCTACATGCGAGTTCTGAAGGAGCATGTATTCCCTTACTGCCATGAATTGCTTAATGTCCACTACGAATCTGAAGTAGAAGATGATATTGTTCCAATATTCCGCAAAGGAGAGGAATTCAACTTCGGTGTGGAATTTGTGCTTCTGCTATCGTTTGTTGATAGTGCATCTGGACATGTGGAAGAGGCATTGGTTTCTTTGGAAGAACTAATTGTGGGATTTCCATCCTTGATTGTCCAATCTACTCGAGGTCTGAATCTTAATCTCAGCAGCAAGGAGTATACACATGGAGTAGTGATCAGATTTCGGTCCTTTGACGCTTTTGAGATATTCATGGGAAGCTCAGAATACAAAAAAATATGGAAGTCGAAATTCGAGCAAATCACTCGGAAAACAATTTCTGTTCATTTTTCAGTTCATCCAGTTGGCAATGAGATTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dabb

Protein Analysis

292

Amino Acids

33.73

Weight (kDa)

7.74

Isoelectric Point (pI)

46.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dabb PF07876 73 - 166 5e-09 Stress responsive A/B Barrel Domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 63
AccI GTMKAC 3 cut(s) 368, 381, 713
AciI CCGC 2 cut(s) 79, 535
AclI AACGTT 1 cut(s) 96
AcsI RAATTY 3 cut(s) 548, 566, 803
AcuI CTGAAG 2 cut(s) 470, 525
AfaI GTAC 2 cut(s) 27, 110
AfiI CCNNNNNNNGG 1 cut(s) 60
AflIII ACRYGT 3 cut(s) 223, 340, 607
AgsI TTSAA 2 cut(s) 11, 553
AjiI CACGTC 1 cut(s) 341
AluBI AGCT 2 cut(s) 183, 774
AluI AGCT 2 cut(s) 183, 774
Alw21I GWGCWC 2 cut(s) 23, 185
Alw26I GTCTC 1 cut(s) 349
Ama87I CYCGRG 2 cut(s) 184, 678
ApeKI GCWGC 1 cut(s) 702
ApoI RAATTY 3 cut(s) 548, 566, 803
Asp700I GAANNNNTTC 1 cut(s) 431
AspLEI GCGC 1 cut(s) 390
AspS9I GGNCC 1 cut(s) 741
AvaI CYCGRG 2 cut(s) 184, 678
AvaII GGWCC 1 cut(s) 741
BanI GGYRCC 1 cut(s) 63
BanII GRGCYC 1 cut(s) 185
BbsI GAAGAC 1 cut(s) 411
Bbv12I GWGCWC 2 cut(s) 23, 185
BbvI GCAGC 1 cut(s) 714
BccI CCATC 1 cut(s) 664
BcgI CGANNNNNNTGC 2 cut(s) 800, 834
BclI TGATCA 2 cut(s) 349, 729
BcoDI GTCTC 1 cut(s) 349
BfaI CTAG 1 cut(s) 335
BisI GCNGC 1 cut(s) 703
BlsI GCNGC 1 cut(s) 704
Bme18I GGWCC 1 cut(s) 741
BmeT110I CYCGRG 2 cut(s) 184, 678
BmgBI CACGTC 1 cut(s) 341
BmgT120I GGNCC 1 cut(s) 741
BmiI GGNNCC 1 cut(s) 65
BmrI ACTGGG 1 cut(s) 295
BmsI GCATC 1 cut(s) 608
BmuI ACTGGG 1 cut(s) 295
BpiI GAAGAC 1 cut(s) 411
BplI GAGNNNNNCTC 4 cut(s) 167, 199, 306, 338
BsaAI YACGTR 1 cut(s) 226
BsaBI GATNNNNATC 1 cut(s) 655
BsaWI WCCGGW 1 cut(s) 102
BsaXI ACNNNNNCTCC 2 cut(s) 144, 174
Bsc4I CCNNNNNNNGG 1 cut(s) 60
Bse118I RCCGGY 1 cut(s) 60
Bse1I ACTGG 2 cut(s) 301, 854
Bse3DI GCAATG 1 cut(s) 868
Bse8I GATNNNNATC 1 cut(s) 655
BseGI GGATG 2 cut(s) 656, 850
BseJI GATNNNNATC 1 cut(s) 655
BseLI CCNNNNNNNGG 1 cut(s) 60
BseMI GCAATG 1 cut(s) 868
BseMII CTCAG 3 cut(s) 29, 712, 789
BseNI ACTGG 2 cut(s) 301, 854
BseRI GAGGAG 1 cut(s) 188
BseXI GCAGC 1 cut(s) 714
BseYI CCCAGC 1 cut(s) 130
BsgI GTGCAG 1 cut(s) 218
Bsh1285I CGRYCG 1 cut(s) 107
BshNI GGYRCC 1 cut(s) 63
BsiEI CGRYCG 1 cut(s) 107
BsiHKAI GWGCWC 2 cut(s) 23, 185
BsiHKCI CYCGRG 2 cut(s) 184, 678
BsiSI CCGG 2 cut(s) 61, 103
BsiWI CGTACG 1 cut(s) 108
BslI CCNNNNNNNGG 1 cut(s) 60
BsmAI GTCTC 1 cut(s) 349
BsmI GAATGC 1 cut(s) 318
BsoBI CYCGRG 2 cut(s) 184, 678
Bsp1286I GDGCHC 2 cut(s) 23, 185
Bsp143I GATC 2 cut(s) 349, 729
BspACI CCGC 2 cut(s) 79, 535
BspCNI CTCAG 3 cut(s) 28, 711, 788
BspLI GGNNCC 1 cut(s) 65
BspT107I GGYRCC 1 cut(s) 63
BsrDI GCAATG 1 cut(s) 868
BsrFI RCCGGY 1 cut(s) 60
BsrI ACTGG 2 cut(s) 301, 854
BssAI RCCGGY 1 cut(s) 60
BssMI GATC 2 cut(s) 349, 729
BssNAI GTATAC 2 cut(s) 369, 714
Bst1107I GTATAC 2 cut(s) 369, 714
Bst6I CTCTTC 2 cut(s) 261, 609
BstBAI YACGTR 1 cut(s) 226
BstC8I GCNNGC 1 cut(s) 233
BstDEI CTNAG 3 cut(s) 15, 698, 775
BstF5I GGATG 2 cut(s) 656, 850
BstHHI GCGC 1 cut(s) 390
BstKTI GATC 2 cut(s) 352, 732
BstMAI GTCTC 1 cut(s) 349
BstMBI GATC 2 cut(s) 349, 729
BstMCI CGRYCG 1 cut(s) 107
BstNSI RCATGY 4 cut(s) 388, 442, 461, 611
BstV1I GCAGC 1 cut(s) 714
BstV2I GAAGAC 1 cut(s) 411
BstZ17I GTATAC 2 cut(s) 369, 714
BtrI CACGTC 1 cut(s) 341
BtsCI GGATG 2 cut(s) 656, 850
BtsIMutI CAGTG 1 cut(s) 23
Cac8I GCNNGC 1 cut(s) 233
CfoI GCGC 1 cut(s) 390
Cfr10I RCCGGY 1 cut(s) 60
Cfr13I GGNCC 1 cut(s) 741
CseI GACGC 1 cut(s) 758
Csp6I GTAC 2 cut(s) 26, 109
CviAII CATG 8 cut(s) 126, 385, 439, 458, 476, 608, 719, 766
CviJI RGCY 6 cut(s) 130, 167, 183, 189, 231, 774
CviKI_1 RGCY 6 cut(s) 130, 167, 183, 189, 231, 774
CviQI GTAC 2 cut(s) 26, 109
DdeI CTNAG 3 cut(s) 15, 698, 775
DpnI GATC 2 cut(s) 351, 731
DpnII GATC 2 cut(s) 349, 729
Eam1104I CTCTTC 2 cut(s) 261, 609
EarI CTCTTC 2 cut(s) 261, 609
Ecl136II GAGCTC 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 185
Eco47I GGWCC 1 cut(s) 741
Eco53kI GAGCTC 1 cut(s) 183
Eco57I CTGAAG 2 cut(s) 470, 525
Eco88I CYCGRG 2 cut(s) 184, 678
EcoICRI GAGCTC 1 cut(s) 183
EcoRI GAATTC 1 cut(s) 548
EcoT38I GRGCYC 1 cut(s) 185
FaeI CATG 8 cut(s) 129, 388, 442, 461, 479, 611, 722, 769
FatI CATG 8 cut(s) 125, 384, 438, 457, 475, 607, 718, 765
FauI CCCGC 1 cut(s) 86
FbaI TGATCA 2 cut(s) 349, 729
FblI GTMKAC 3 cut(s) 368, 381, 713
Fnu4HI GCNGC 1 cut(s) 703
FokI GGATG 2 cut(s) 643, 837
FriOI GRGCYC 1 cut(s) 185
Fsp4HI GCNGC 1 cut(s) 703
FspBI CTAG 1 cut(s) 335
GlaI GCGC 1 cut(s) 389
GluI GCNGC 1 cut(s) 703
GsaI CCCAGC 1 cut(s) 134
HapII CCGG 2 cut(s) 61, 103
HgaI GACGC 1 cut(s) 758
HhaI GCGC 1 cut(s) 390
Hin1II CATG 8 cut(s) 129, 388, 442, 461, 479, 611, 722, 769
Hin6I GCGC 1 cut(s) 388
HinP1I GCGC 1 cut(s) 388
HinfI GANTC 2 cut(s) 500, 688
HpaII CCGG 2 cut(s) 61, 103
Hpy166II GTNNAC 4 cut(s) 369, 382, 493, 714
Hpy188I TCNGA 8 cut(s) 259, 349, 450, 505, 687, 734, 778, 822
Hpy188III TCNNGA 2 cut(s) 394, 603
Hpy8I GTNNAC 4 cut(s) 369, 382, 493, 714
Hpy99I CGWCG 1 cut(s) 60
HpyAV CCTTC 3 cut(s) 77, 265, 445
HpyCH4IV ACGT 3 cut(s) 96, 225, 340
HpyCH4V TGCA 2 cut(s) 199, 599
HpyF3I CTNAG 3 cut(s) 15, 698, 775
HpySE526I ACGT 3 cut(s) 96, 225, 340
Hsp92II CATG 8 cut(s) 129, 388, 442, 461, 479, 611, 722, 769
HspAI GCGC 1 cut(s) 388
Ksp22I TGATCA 2 cut(s) 349, 729
Kzo9I GATC 2 cut(s) 349, 729
LmnI GCTCC 3 cut(s) 26, 175, 454
Lsp1109I GCAGC 1 cut(s) 714
LweI GCATC 1 cut(s) 608
MaeI CTAG 1 cut(s) 335
MaeII ACGT 3 cut(s) 96, 225, 340
MalI GATC 2 cut(s) 351, 731
MboI GATC 2 cut(s) 349, 729
MboII GAAGA 8 cut(s) 148, 214, 275, 278, 416, 524, 626, 647
MhlI GDGCHC 2 cut(s) 23, 185
MluCI AATT 6 cut(s) 479, 548, 566, 642, 803, 828
MnlI CCTC 7 cut(s) 53, 166, 200, 308, 538, 610, 674
MroXI GAANNNNTTC 1 cut(s) 431
MseI TTAA 3 cut(s) 93, 486, 693
MspI CCGG 2 cut(s) 61, 103
Mva1269I GAATGC 1 cut(s) 318
NdeII GATC 2 cut(s) 349, 729
NlaIII CATG 8 cut(s) 129, 388, 442, 461, 479, 611, 722, 769
NlaIV GGNNCC 1 cut(s) 65
NspI RCATGY 4 cut(s) 388, 442, 461, 611
PaeR7I CTCGAG 2 cut(s) 184, 678
PciI ACATGT 1 cut(s) 607
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PctI GAATGC 1 cut(s) 318
PdmI GAANNNNTTC 1 cut(s) 431
PfeI GAWTC 2 cut(s) 500, 688
Pfl23II CGTACG 1 cut(s) 108
PkrI GCNGC 1 cut(s) 704
Ppu21I YACGTR 1 cut(s) 226
PscI ACATGT 1 cut(s) 607
Psp124BI GAGCTC 1 cut(s) 185
Psp1406I AACGTT 1 cut(s) 96
PspFI CCCAGC 1 cut(s) 130
PspLI CGTACG 1 cut(s) 108
PspN4I GGNNCC 1 cut(s) 65
PspPI GGNCC 1 cut(s) 741
PspXI VCTCGAGB 2 cut(s) 184, 678
PsrI GAACNNNNNNTAC 2 cut(s) 419, 451
RsaI GTAC 2 cut(s) 27, 110
RsaNI GTAC 2 cut(s) 26, 109
SacI GAGCTC 1 cut(s) 185
SaqAI TTAA 3 cut(s) 93, 486, 693
SatI GCNGC 1 cut(s) 703
Sau3AI GATC 2 cut(s) 349, 729
Sau96I GGNCC 1 cut(s) 741
SduI GDGCHC 2 cut(s) 23, 185
SetI ASST 6 cut(s) 99, 185, 228, 343, 685, 776
SfaNI GCATC 1 cut(s) 608
Sfr274I CTCGAG 2 cut(s) 184, 678
SgrAI CRCCGGYG 1 cut(s) 60
SinI GGWCC 1 cut(s) 741
SlaI CTCGAG 2 cut(s) 184, 678
SmlI CTYRAG 2 cut(s) 184, 678
SmoI CTYRAG 2 cut(s) 184, 678
Sse9I AATT 6 cut(s) 479, 548, 566, 642, 803, 828
SsiI CCGC 2 cut(s) 79, 535
SspI AATATT 1 cut(s) 531
SspMI CTAG 1 cut(s) 335
SstI GAGCTC 1 cut(s) 185
TaiI ACGT 3 cut(s) 99, 228, 343
TaqI TCGA 4 cut(s) 185, 679, 800, 807
TaqII GACCGA 1 cut(s) 729
TasI AATT 6 cut(s) 479, 548, 566, 642, 803, 828
TfiI GAWTC 2 cut(s) 500, 688
Tru1I TTAA 3 cut(s) 93, 486, 693
Tru9I TTAA 3 cut(s) 93, 486, 693
TscAI CASTG 1 cut(s) 23
TseI GCWGC 1 cut(s) 702
TspDTI ATGAA 6 cut(s) 276, 417, 492, 754, 827, 839
TspGWI ACGGA 3 cut(s) 13, 126, 185
TspRI CASTG 1 cut(s) 23
VpaK11BI GGWCC 1 cut(s) 741
XapI RAATTY 3 cut(s) 548, 566, 803
XceI RCATGY 4 cut(s) 388, 442, 461, 611
XhoI CTCGAG 2 cut(s) 184, 678
XmiI GTMKAC 3 cut(s) 368, 381, 713
XmnI GAANNNNTTC 1 cut(s) 431
XspI CTAG 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.