Rh7AG172400

Stress responsive A/B Barrel Domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0010456
Physical Location & Seq
Reverse (-)
14956836 .. 14960033
3198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG172400.1

Sequence Viewer

Length: 798 bp
ATGCTCATTCAAGCTCATTGCTCCACACTCTCTCCTGTTTCTCTCACAAACACTACCCGCCAATTCCCTATCATCTCCCGCCCTGCCCCTTCTAATGTGTATCGATCGAATGGAGCTGTGAGTTCGGGGTTGGGGAGGAAAAAGAATCGGGGAGTGATAGTTTCGGCTTCTGAGGAGCAGAGCTCAAGCCCCAATTTGCAGAAGAGAAGAAAGATCATCGAACACATATGTCTGCTCAAATCGAAGGAGGATTTATCTGATGAGGAAGAGAAGGATATGCTGGATTATCTGTATACAACCCAGTATCAAATGAGAGGCATTGTTGCAATATCATTAGGACGTATCGGTAATCAAAATCCCGGCAAGTATAGCTACGCTTTCTACCTGCGTTTCCAGAGAAAAGAAGACCTTGTAAAGTTTTACCAGCATCCTTTCTACTTGGGAGTTCTCAAGGATCATGTATCGCCTTACTGCCATGAATTGCTAAATGTAGATTATGAATCTGAAGTAGAAGATGATATCCTTCCTATATTTCGAAAAGGAGAGGAATTCAACTTTGGTGTGGAGTTTGTGCTTCTGATTTCCTTCGTCGATAATGCATCTGATCATGTGGAAGATGCATTGGTTTCTTTGGAAGGGCTGCTGATGGGATTCCAATCCTTGATTGTCCAATCTACTCAAGGTTTGTTTGAACTAACAGCCATCATGCTACTGACAGTTCAGAACTACTTAACACTATTTAATACTCCACAAGAACCAAAAATTTCTGCCCCTACCATTCAGGCCAAAATCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dabb

Protein Analysis

265

Amino Acids

30.05

Weight (kDa)

5.73

Isoelectric Point (pI)

47.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dabb PF07876 73 - 167 9.4e-11 Stress responsive A/B Barrel Domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 393
AccI GTMKAC 1 cut(s) 293
AciI CCGC 2 cut(s) 58, 79
AclWI GGATC 1 cut(s) 462
AcsI RAATTY 2 cut(s) 548, 762
AcuI CTGAAG 1 cut(s) 525
AgsI TTSAA 3 cut(s) 11, 553, 692
AjuI GAANNNNNNNTTGG 2 cut(s) 540, 572
AluBI AGCT 4 cut(s) 14, 116, 183, 372
AluI AGCT 4 cut(s) 14, 116, 183, 372
Alw21I GWGCWC 1 cut(s) 185
AlwI GGATC 1 cut(s) 462
AoxI GGCC 1 cut(s) 783
ApeKI GCWGC 1 cut(s) 640
ApoI RAATTY 2 cut(s) 548, 762
AsuC2I CCSGG 1 cut(s) 360
AsuII TTCGAA 1 cut(s) 535
BanII GRGCYC 1 cut(s) 185
BbsI GAAGAC 1 cut(s) 411
Bbv12I GWGCWC 1 cut(s) 185
BbvI GCAGC 1 cut(s) 627
BccI CCATC 2 cut(s) 640, 710
BclI TGATCA 1 cut(s) 604
BcnI CCSGG 1 cut(s) 360
BfuAI ACCTGC 1 cut(s) 393
BisI GCNGC 1 cut(s) 641
BlsI GCNGC 1 cut(s) 642
Bme1390I CCNGG 1 cut(s) 360
BmrFI CCNGG 1 cut(s) 360
BmrI ACTGGG 1 cut(s) 295
BmsI GCATC 3 cut(s) 436, 607, 608
BmuI ACTGGG 1 cut(s) 295
BpiI GAAGAC 1 cut(s) 411
BplI GAGNNNNNCTC 2 cut(s) 167, 199
Bpu14I TTCGAA 1 cut(s) 535
BpuEI CTTGAG 3 cut(s) 169, 434, 663
BpuMI CCSGG 1 cut(s) 360
Bsa29I ATCGAT 1 cut(s) 103
BsaBI GATNNNNATC 1 cut(s) 655
BsaXI ACNNNNNCTCC 4 cut(s) 16, 46, 144, 174
Bse1I ACTGG 1 cut(s) 301
Bse3DI GCAATG 1 cut(s) 16
Bse8I GATNNNNATC 1 cut(s) 655
BseCI ATCGAT 1 cut(s) 103
BseGI GGATG 1 cut(s) 427
BseJI GATNNNNATC 1 cut(s) 655
BseMI GCAATG 1 cut(s) 16
BseMII CTCAG 1 cut(s) 162
BseNI ACTGG 1 cut(s) 301
BseRI GAGGAG 1 cut(s) 188
BseXI GCAGC 1 cut(s) 627
Bsh1285I CGRYCG 1 cut(s) 107
BshFI GGCC 1 cut(s) 785
BshVI ATCGAT 1 cut(s) 103
BsiEI CGRYCG 1 cut(s) 107
BsiHKAI GWGCWC 1 cut(s) 185
BsiSI CCGG 1 cut(s) 360
BsnI GGCC 1 cut(s) 785
Bsp119I TTCGAA 1 cut(s) 535
Bsp1286I GDGCHC 1 cut(s) 185
Bsp143I GATC 4 cut(s) 104, 213, 454, 604
BspACI CCGC 2 cut(s) 58, 79
BspANI GGCC 1 cut(s) 785
BspCNI CTCAG 1 cut(s) 163
BspDI ATCGAT 1 cut(s) 103
BspMI ACCTGC 1 cut(s) 393
BspPI GGATC 1 cut(s) 462
BspT104I TTCGAA 1 cut(s) 535
BsrDI GCAATG 1 cut(s) 16
BsrI ACTGG 1 cut(s) 301
BssMI GATC 4 cut(s) 104, 213, 454, 604
BssNAI GTATAC 1 cut(s) 294
Bst1107I GTATAC 1 cut(s) 294
Bst4CI ACNGT 1 cut(s) 718
Bst6I CTCTTC 2 cut(s) 197, 261
BstBI TTCGAA 1 cut(s) 535
BstDEI CTNAG 1 cut(s) 171
BstF5I GGATG 1 cut(s) 427
BstKTI GATC 4 cut(s) 107, 216, 457, 607
BstMBI GATC 4 cut(s) 104, 213, 454, 604
BstMCI CGRYCG 1 cut(s) 107
BstMWI GCNNNNNNNGC 1 cut(s) 369
BstSCI CCNGG 1 cut(s) 358
BstV1I GCAGC 1 cut(s) 627
BstV2I GAAGAC 1 cut(s) 411
BstZ17I GTATAC 1 cut(s) 294
Bsu15I ATCGAT 1 cut(s) 103
BsuRI GGCC 1 cut(s) 785
BsuTUI ATCGAT 1 cut(s) 103
BtsCI GGATG 1 cut(s) 427
BveI ACCTGC 1 cut(s) 393
ClaI ATCGAT 1 cut(s) 103
CviAII CATG 4 cut(s) 458, 476, 608, 706
CviJI RGCY 9 cut(s) 14, 116, 167, 183, 189, 372, 640, 701, 785
CviKI_1 RGCY 9 cut(s) 14, 116, 167, 183, 189, 372, 640, 701, 785
DdeI CTNAG 1 cut(s) 171
DpnI GATC 4 cut(s) 106, 215, 456, 606
DpnII GATC 4 cut(s) 104, 213, 454, 604
Eam1104I CTCTTC 2 cut(s) 197, 261
EarI CTCTTC 2 cut(s) 197, 261
Ecl136II GAGCTC 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 185
Eco32I GATATC 1 cut(s) 520
Eco53kI GAGCTC 1 cut(s) 183
Eco57I CTGAAG 1 cut(s) 525
EcoICRI GAGCTC 1 cut(s) 183
EcoRI GAATTC 1 cut(s) 548
EcoRV GATATC 1 cut(s) 520
EcoT22I ATGCAT 2 cut(s) 601, 622
EcoT38I GRGCYC 1 cut(s) 185
FaeI CATG 4 cut(s) 461, 479, 611, 709
FalI AAGNNNNNCTT 2 cut(s) 393, 425
FatI CATG 4 cut(s) 457, 475, 607, 705
FauI CCCGC 2 cut(s) 65, 86
FauNDI CATATG 1 cut(s) 227
FbaI TGATCA 1 cut(s) 604
FblI GTMKAC 1 cut(s) 293
Fnu4HI GCNGC 1 cut(s) 641
FokI GGATG 1 cut(s) 414
FriOI GRGCYC 1 cut(s) 185
Fsp4HI GCNGC 1 cut(s) 641
GluI GCNGC 1 cut(s) 641
HaeIII GGCC 1 cut(s) 785
HapII CCGG 1 cut(s) 360
Hin1II CATG 4 cut(s) 461, 479, 611, 709
HinfI GANTC 3 cut(s) 145, 500, 651
HpaII CCGG 1 cut(s) 360
Hpy166II GTNNAC 1 cut(s) 294
Hpy188I TCNGA 6 cut(s) 172, 259, 505, 579, 604, 723
Hpy188III TCNNGA 1 cut(s) 394
Hpy8I GTNNAC 1 cut(s) 294
Hpy99I CGWCG 1 cut(s) 593
HpyAV CCTTC 6 cut(s) 99, 238, 265, 533, 595, 629
HpyCH4III ACNGT 1 cut(s) 718
HpyCH4IV ACGT 1 cut(s) 340
HpyCH4V TGCA 4 cut(s) 199, 326, 599, 620
HpyF10VI GCNNNNNNNGC 1 cut(s) 369
HpyF3I CTNAG 1 cut(s) 171
HpySE526I ACGT 1 cut(s) 340
Hsp92II CATG 4 cut(s) 461, 479, 611, 709
Ksp22I TGATCA 1 cut(s) 604
Kzo9I GATC 4 cut(s) 104, 213, 454, 604
LmnI GCTCC 3 cut(s) 26, 113, 175
LpnPI CCDG 9 cut(s) 48, 96, 266, 314, 373, 398, 407, 437, 767
Lsp1109I GCAGC 1 cut(s) 627
LweI GCATC 3 cut(s) 436, 607, 608
MaeII ACGT 1 cut(s) 340
MalI GATC 4 cut(s) 106, 215, 456, 606
MboI GATC 4 cut(s) 104, 213, 454, 604
MboII GAAGA 6 cut(s) 214, 219, 278, 416, 524, 626
MhlI GDGCHC 1 cut(s) 185
MluCI AATT 6 cut(s) 62, 193, 479, 548, 762, 793
MnlI CCTC 6 cut(s) 129, 166, 241, 256, 308, 538
Mph1103I ATGCAT 2 cut(s) 601, 622
MseI TTAA 2 cut(s) 731, 741
MspI CCGG 1 cut(s) 360
MspR9I CCNGG 1 cut(s) 360
MwoI GCNNNNNNNGC 1 cut(s) 369
NciI CCSGG 1 cut(s) 360
NdeI CATATG 1 cut(s) 227
NdeII GATC 4 cut(s) 104, 213, 454, 604
NlaIII CATG 4 cut(s) 461, 479, 611, 709
NsiI ATGCAT 2 cut(s) 601, 622
NspV TTCGAA 1 cut(s) 535
PfeI GAWTC 3 cut(s) 145, 500, 651
PkrI GCNGC 1 cut(s) 642
Ple19I CGATCG 1 cut(s) 107
Psp124BI GAGCTC 1 cut(s) 185
PvuI CGATCG 1 cut(s) 107
SacI GAGCTC 1 cut(s) 185
SaqAI TTAA 2 cut(s) 731, 741
SatI GCNGC 1 cut(s) 641
Sau3AI GATC 4 cut(s) 104, 213, 454, 604
ScrFI CCNGG 1 cut(s) 360
SduI GDGCHC 1 cut(s) 185
SetI ASST 8 cut(s) 16, 118, 185, 343, 374, 387, 411, 685
SfaNI GCATC 3 cut(s) 436, 607, 608
SfuI TTCGAA 1 cut(s) 535
SmlI CTYRAG 3 cut(s) 184, 449, 678
SmoI CTYRAG 3 cut(s) 184, 449, 678
Sse9I AATT 6 cut(s) 62, 193, 479, 548, 762, 793
SsiI CCGC 2 cut(s) 58, 79
SstI GAGCTC 1 cut(s) 185
StyD4I CCNGG 1 cut(s) 358
TaaI ACNGT 1 cut(s) 718
TaiI ACGT 1 cut(s) 343
TaqI TCGA 6 cut(s) 103, 107, 219, 242, 535, 591
TasI AATT 6 cut(s) 62, 193, 479, 548, 762, 793
TfiI GAWTC 3 cut(s) 145, 500, 651
Tru1I TTAA 2 cut(s) 731, 741
Tru9I TTAA 2 cut(s) 731, 741
TseI GCWGC 1 cut(s) 640
TspDTI ATGAA 2 cut(s) 492, 513
XapI RAATTY 2 cut(s) 548, 762
XmiI GTMKAC 1 cut(s) 293
Zsp2I ATGCAT 2 cut(s) 601, 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.