Rorug07G0048600

Stress responsive A/B Barrel Domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0010456
Physical Location & Seq
Forward (+)
3512513 .. 3513178
666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0048600.1

Sequence Viewer

Length: 666 bp
ATGGAGGCCAGGCAGAATTATTCTCCATTCCAAGGACGTAGCATCCCTGTGATGCAGTACTCGACACCACCCAATAAGAAAAGAAGTTGTTTTCGTAAGTGCCTGTGTTGGACTATCTGCCTGCTCTTGCTGCAAGTGATTGTGGTTGCGATCACCGGTGGAATTTTATACCTTGTGTTCCGACCAAAGCTTCCCAAATACACGGTGAGCAAACTGCAGATAACGCAGTTCAGTCTCAACTATGATCAGAGCTTCAGTGCTACATTCAATGTGAGCATCACTGCCCGGAACCCCAACAAAAAGATCGGCATAGACTATGAAGGCGGGAGCCGCATAAGTTTGTGGTACACAAGCACTAAGCTTTGTGAAGGAGGTTTGCCTAAATTCTACCAGGGTCACCGCAACACGACTCAACTTGTAGTACCACTCAGTGGACACACTCAAGATTCAAAGGTCCTGCTCACCACACTCCTACATCAGCAGCAACAAACTGGCAACATTCCGCTCACTCTCAGGATTCGGCAACCCGTAAGGATTAAGCTTGGCAGCTTCAAGCTCCCAAAGATCAAGTTTGTAGTCAGGCACAGGTTGTTGGTTGACGGTCTTTCAGAGAAAAACGATATTAGAATTCAAAGCAGTAGCTGTAAGTTCAGGCTTAGGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dabb

Protein Analysis

221

Amino Acids

25.27

Weight (kDa)

10.32

Isoelectric Point (pI)

50.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 93 - 186 3.2e-09 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 431
AccBSI CCGCTC 1 cut(s) 505
AciI CCGC 4 cut(s) 324, 331, 400, 503
AcsI RAATTY 3 cut(s) 162, 383, 627
AcuI CTGAAG 1 cut(s) 238
AdeI CACNNNGTG 1 cut(s) 431
AfaI GTAC 3 cut(s) 59, 347, 423
AfiI CCNNNNNNNGG 2 cut(s) 32, 431
AgeI ACCGGT 1 cut(s) 155
AgsI TTSAA 4 cut(s) 268, 450, 553, 632
AjnI CCWGG 2 cut(s) 8, 390
AluBI AGCT 7 cut(s) 190, 252, 361, 541, 549, 556, 642
AluI AGCT 7 cut(s) 190, 252, 361, 541, 549, 556, 642
Alw26I GTCTC 1 cut(s) 239
AlwNI CAGNNNCTG 1 cut(s) 642
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 3 cut(s) 130, 481, 546
ApoI RAATTY 3 cut(s) 162, 383, 627
AsiGI ACCGGT 1 cut(s) 155
AspS9I GGNCC 1 cut(s) 454
AsuC2I CCSGG 1 cut(s) 286
AsuHPI GGTGA 4 cut(s) 145, 217, 389, 454
AvaII GGWCC 1 cut(s) 454
BbvI GCAGC 3 cut(s) 117, 493, 558
BciT130I CCWGG 2 cut(s) 10, 392
BclI TGATCA 1 cut(s) 244
BcnI CCSGG 1 cut(s) 286
BcoDI GTCTC 1 cut(s) 239
BfmI CTRYAG 1 cut(s) 215
BisI GCNGC 4 cut(s) 131, 331, 482, 547
BlsI GCNGC 4 cut(s) 132, 332, 483, 548
BmcAI AGTACT 1 cut(s) 59
Bme1390I CCNGG 3 cut(s) 10, 286, 392
Bme18I GGWCC 1 cut(s) 454
BmgT120I GGNCC 1 cut(s) 454
BmiI GGNNCC 2 cut(s) 290, 329
BmrFI CCNGG 3 cut(s) 10, 286, 392
BmsI GCATC 3 cut(s) 42, 51, 285
Bpu10I CCTNAGC 1 cut(s) 656
BpuEI CTTGAG 1 cut(s) 426
BpuMI CCSGG 1 cut(s) 286
BsaJI CCNNGG 2 cut(s) 31, 391
BsaWI WCCGGW 1 cut(s) 155
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 431
Bse118I RCCGGY 1 cut(s) 155
Bse1I ACTGG 1 cut(s) 496
BseBI CCWGG 2 cut(s) 10, 392
BseDI CCNNGG 2 cut(s) 31, 391
BseGI GGATG 1 cut(s) 42
BseLI CCNNNNNNNGG 2 cut(s) 32, 431
BseMII CTCAG 2 cut(s) 442, 526
BseNI ACTGG 1 cut(s) 496
BseXI GCAGC 3 cut(s) 117, 493, 558
BshFI GGCC 1 cut(s) 8
BshTI ACCGGT 1 cut(s) 155
BsiSI CCGG 2 cut(s) 156, 286
BslI CCNNNNNNNGG 2 cut(s) 32, 431
BsmAI GTCTC 1 cut(s) 239
BsnI GGCC 1 cut(s) 8
Bsp143I GATC 4 cut(s) 150, 244, 303, 564
BspACI CCGC 4 cut(s) 324, 331, 400, 503
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 2 cut(s) 441, 525
BspLI GGNNCC 2 cut(s) 290, 329
BspMAI CTGCAG 1 cut(s) 219
BsrBI CCGCTC 1 cut(s) 505
BsrFI RCCGGY 1 cut(s) 155
BsrI ACTGG 1 cut(s) 496
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 2 cut(s) 31, 391
BssMI GATC 4 cut(s) 150, 244, 303, 564
BssT1I CCWWGG 1 cut(s) 31
Bst2UI CCWGG 2 cut(s) 10, 392
Bst4CI ACNGT 2 cut(s) 205, 602
BstC8I GCNNGC 1 cut(s) 122
BstDEI CTNAG 4 cut(s) 357, 428, 512, 656
BstEII GGTNACC 1 cut(s) 395
BstF5I GGATG 1 cut(s) 42
BstKTI GATC 4 cut(s) 153, 247, 306, 567
BstMAI GTCTC 1 cut(s) 239
BstMBI GATC 4 cut(s) 150, 244, 303, 564
BstMWI GCNNNNNNNGC 3 cut(s) 130, 223, 330
BstNI CCWGG 2 cut(s) 10, 392
BstPI GGTNACC 1 cut(s) 395
BstSCI CCNGG 3 cut(s) 8, 284, 390
BstSFI CTRYAG 1 cut(s) 215
BstV1I GCAGC 3 cut(s) 117, 493, 558
BsuRI GGCC 1 cut(s) 8
BtsCI GGATG 1 cut(s) 42
BtsI GCAGTG 1 cut(s) 279
BtsIMutI CAGTG 3 cut(s) 262, 279, 436
Cac8I GCNNGC 1 cut(s) 122
CaiI CAGNNNCTG 1 cut(s) 642
Cfr10I RCCGGY 1 cut(s) 155
Cfr13I GGNCC 1 cut(s) 454
Csp6I GTAC 3 cut(s) 58, 346, 422
CspAI ACCGGT 1 cut(s) 155
CviQI GTAC 3 cut(s) 58, 346, 422
DdeI CTNAG 4 cut(s) 357, 428, 512, 656
DpnI GATC 4 cut(s) 152, 246, 305, 566
DpnII GATC 4 cut(s) 150, 244, 303, 564
DraIII CACNNNGTG 1 cut(s) 431
Eco130I CCWWGG 1 cut(s) 31
Eco47I GGWCC 1 cut(s) 454
Eco57I CTGAAG 1 cut(s) 238
Eco91I GGTNACC 1 cut(s) 395
EcoO109I RGGNCCY 1 cut(s) 454
EcoO65I GGTNACC 1 cut(s) 395
EcoRI GAATTC 1 cut(s) 627
EcoRII CCWGG 2 cut(s) 8, 390
EcoT14I CCWWGG 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 31
FaiI YATR 5 cut(s) 169, 243, 311, 318, 335
FauI CCCGC 1 cut(s) 317
FbaI TGATCA 1 cut(s) 244
Fnu4HI GCNGC 4 cut(s) 131, 331, 482, 547
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 4 cut(s) 131, 331, 482, 547
GluI GCNGC 4 cut(s) 131, 331, 482, 547
HaeIII GGCC 1 cut(s) 8
HapII CCGG 2 cut(s) 156, 286
HincII GTYRAC 1 cut(s) 598
HindII GTYRAC 1 cut(s) 598
HindIII AAGCTT 3 cut(s) 188, 359, 539
HinfI GANTC 3 cut(s) 409, 446, 517
HpaII CCGG 2 cut(s) 156, 286
HphI GGTGA 4 cut(s) 145, 217, 389, 454
Hpy166II GTNNAC 3 cut(s) 348, 434, 598
Hpy188I TCNGA 3 cut(s) 182, 249, 610
Hpy188III TCNNGA 2 cut(s) 443, 514
Hpy8I GTNNAC 3 cut(s) 348, 434, 598
HpyAV CCTTC 2 cut(s) 314, 362
HpyCH4III ACNGT 2 cut(s) 205, 602
HpyCH4IV ACGT 1 cut(s) 37
HpyCH4V TGCA 3 cut(s) 55, 133, 217
HpyF10VI GCNNNNNNNGC 3 cut(s) 130, 223, 330
HpyF3I CTNAG 4 cut(s) 357, 428, 512, 656
HpySE526I ACGT 1 cut(s) 37
Ksp22I TGATCA 1 cut(s) 244
Kzo9I GATC 4 cut(s) 150, 244, 303, 564
LmnI GCTCC 2 cut(s) 327, 561
Lsp1109I GCAGC 3 cut(s) 117, 493, 558
LweI GCATC 3 cut(s) 42, 51, 285
MaeII ACGT 1 cut(s) 37
MaeIII GTNAC 1 cut(s) 395
MalI GATC 4 cut(s) 152, 246, 305, 566
MbiI CCGCTC 1 cut(s) 505
MboI GATC 4 cut(s) 150, 244, 303, 564
MluCI AATT 4 cut(s) 16, 162, 383, 627
MlyI GAGTC 1 cut(s) 403
MmeI TCCRAC 2 cut(s) 89, 205
MnlI CCTC 1 cut(s) 365
MseI TTAA 1 cut(s) 537
MslI CAYNNNNRTG 1 cut(s) 47
MspI CCGG 2 cut(s) 156, 286
MspR9I CCNGG 3 cut(s) 10, 286, 392
MvaI CCWGG 2 cut(s) 10, 392
MwoI GCNNNNNNNGC 3 cut(s) 130, 223, 330
NciI CCSGG 1 cut(s) 286
NdeII GATC 4 cut(s) 150, 244, 303, 564
NlaIV GGNNCC 2 cut(s) 290, 329
NmuCI GTSAC 1 cut(s) 395
PfeI GAWTC 2 cut(s) 446, 517
PflMI CCANNNNNTGG 1 cut(s) 431
PinAI ACCGGT 1 cut(s) 155
PkrI GCNGC 4 cut(s) 132, 332, 483, 548
PleI GAGTC 1 cut(s) 403
PpsI GAGTC 1 cut(s) 403
PpuMI RGGWCCY 1 cut(s) 454
Psp5II RGGWCCY 1 cut(s) 454
Psp6I CCWGG 2 cut(s) 8, 390
PspEI GGTNACC 1 cut(s) 395
PspGI CCWGG 2 cut(s) 8, 390
PspN4I GGNNCC 2 cut(s) 290, 329
PspPI GGNCC 1 cut(s) 454
PspPPI RGGWCCY 1 cut(s) 454
PstI CTGCAG 1 cut(s) 219
PstNI CAGNNNCTG 1 cut(s) 642
RsaI GTAC 3 cut(s) 59, 347, 423
RsaNI GTAC 3 cut(s) 58, 346, 422
RseI CAYNNNNRTG 1 cut(s) 47
SaqAI TTAA 1 cut(s) 537
SatI GCNGC 4 cut(s) 131, 331, 482, 547
Sau3AI GATC 4 cut(s) 150, 244, 303, 564
Sau96I GGNCC 1 cut(s) 454
ScaI AGTACT 1 cut(s) 59
SchI GAGTC 1 cut(s) 403
ScrFI CCNGG 3 cut(s) 10, 286, 392
SfaNI GCATC 3 cut(s) 42, 51, 285
SfcI CTRYAG 1 cut(s) 215
SgrAI CRCCGGYG 1 cut(s) 155
SinI GGWCC 1 cut(s) 454
SmiMI CAYNNNNRTG 1 cut(s) 47
SmlI CTYRAG 1 cut(s) 441
SmoI CTYRAG 1 cut(s) 441
Sse9I AATT 4 cut(s) 16, 162, 383, 627
SsiI CCGC 4 cut(s) 324, 331, 400, 503
StyD4I CCNGG 3 cut(s) 8, 284, 390
StyI CCWWGG 1 cut(s) 31
TaaI ACNGT 2 cut(s) 205, 602
TaiI ACGT 1 cut(s) 40
TaqI TCGA 1 cut(s) 62
TasI AATT 4 cut(s) 16, 162, 383, 627
TatI WGTACW 1 cut(s) 57
TauI GCSGC 1 cut(s) 333
TfiI GAWTC 2 cut(s) 446, 517
Tru1I TTAA 1 cut(s) 537
Tru9I TTAA 1 cut(s) 537
TscAI CASTG 3 cut(s) 262, 286, 436
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 3 cut(s) 130, 481, 546
Tsp45I GTSAC 1 cut(s) 395
TspDTI ATGAA 1 cut(s) 333
TspRI CASTG 3 cut(s) 262, 286, 436
Van91I CCANNNNNTGG 1 cut(s) 431
VpaK11BI GGWCC 1 cut(s) 454
XapI RAATTY 3 cut(s) 162, 383, 627
ZrmI AGTACT 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.