Rh7DG174700

Stress responsive A/B Barrel Domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0010456
Physical Location & Seq
Reverse (-)
16024343 .. 16028990
4648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG174700.1

Sequence Viewer

Length: 501 bp
ATGCTCATTCAAGCTCATTGCTCCACACTCTCTCCTGTTTCTCTCACAAACGCTACCCGCCAATTCCCTATCATCTCCCGCCCTGCCCCTTTTAATGTGTATCGATCGAATGGAGCTGTGAGTTCGTGGTTGGGGAGGAAAAAGAATCGGGGAGTGATAGTTTCTGCTTCTGAGGAGCAGAGCTCAAGCCCCAATTTGCAGAAGAGAAGAAAGATCATCGAACACATATGTCTGCTCAAATCGAAGGAGGATTTATCTGATGAGGAAGAGAAGGATATGCTGGATTATCTGTATACAACCCAGTATCAAATGAGAGGCATTGTTGCAATATCATTAGGACGTATCGGTAATCAAAATCCCGACGAGTATAGCTACGCTTTCTACCTGCGTTTCCAGAGAAAAGAAGACCTTGTAAAGTTTTACCAGCATCCTTTCTACTTGGGAGTTCTCAAGGATCATGTATCGCCTTACTGCCATGTATGCCCTGACATGAATTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dabb

Protein Analysis

166

Amino Acids

19.17

Weight (kDa)

8.78

Isoelectric Point (pI)

60.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dabb PF07876 73 - 159 3.3e-09 Stress responsive A/B Barrel Domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 393
AccI GTMKAC 1 cut(s) 293
AciI CCGC 2 cut(s) 58, 79
AclWI GGATC 1 cut(s) 462
AgsI TTSAA 1 cut(s) 11
AluBI AGCT 4 cut(s) 14, 116, 183, 372
AluI AGCT 4 cut(s) 14, 116, 183, 372
Alw21I GWGCWC 1 cut(s) 185
AlwI GGATC 1 cut(s) 462
BanII GRGCYC 1 cut(s) 185
BbsI GAAGAC 1 cut(s) 411
Bbv12I GWGCWC 1 cut(s) 185
BfuAI ACCTGC 1 cut(s) 393
BmrI ACTGGG 1 cut(s) 295
BmsI GCATC 1 cut(s) 436
BmuI ACTGGG 1 cut(s) 295
BpiI GAAGAC 1 cut(s) 411
BplI GAGNNNNNCTC 2 cut(s) 167, 199
BpuEI CTTGAG 2 cut(s) 169, 434
Bsa29I ATCGAT 1 cut(s) 103
BsaXI ACNNNNNCTCC 4 cut(s) 16, 46, 144, 174
Bse1I ACTGG 1 cut(s) 301
Bse3DI GCAATG 1 cut(s) 16
BseCI ATCGAT 1 cut(s) 103
BseGI GGATG 1 cut(s) 427
BseMI GCAATG 1 cut(s) 16
BseMII CTCAG 1 cut(s) 162
BseNI ACTGG 1 cut(s) 301
BseRI GAGGAG 1 cut(s) 188
Bsh1285I CGRYCG 1 cut(s) 107
BshVI ATCGAT 1 cut(s) 103
BsiEI CGRYCG 1 cut(s) 107
BsiHKAI GWGCWC 1 cut(s) 185
Bsp1286I GDGCHC 1 cut(s) 185
Bsp143I GATC 3 cut(s) 104, 213, 454
BspACI CCGC 2 cut(s) 58, 79
BspCNI CTCAG 1 cut(s) 163
BspDI ATCGAT 1 cut(s) 103
BspMI ACCTGC 1 cut(s) 393
BspPI GGATC 1 cut(s) 462
BsrDI GCAATG 1 cut(s) 16
BsrI ACTGG 1 cut(s) 301
BssMI GATC 3 cut(s) 104, 213, 454
BssNAI GTATAC 1 cut(s) 294
Bst1107I GTATAC 1 cut(s) 294
Bst6I CTCTTC 2 cut(s) 197, 261
BstDEI CTNAG 1 cut(s) 171
BstF5I GGATG 1 cut(s) 427
BstKTI GATC 3 cut(s) 107, 216, 457
BstMBI GATC 3 cut(s) 104, 213, 454
BstMCI CGRYCG 1 cut(s) 107
BstMWI GCNNNNNNNGC 1 cut(s) 480
BstV2I GAAGAC 1 cut(s) 411
BstZ17I GTATAC 1 cut(s) 294
Bsu15I ATCGAT 1 cut(s) 103
BsuTUI ATCGAT 1 cut(s) 103
BtsCI GGATG 1 cut(s) 427
BveI ACCTGC 1 cut(s) 393
ClaI ATCGAT 1 cut(s) 103
CviAII CATG 3 cut(s) 458, 476, 490
CviJI RGCY 5 cut(s) 14, 116, 183, 189, 372
CviKI_1 RGCY 5 cut(s) 14, 116, 183, 189, 372
DdeI CTNAG 1 cut(s) 171
DpnI GATC 3 cut(s) 106, 215, 456
DpnII GATC 3 cut(s) 104, 213, 454
Eam1104I CTCTTC 2 cut(s) 197, 261
EarI CTCTTC 2 cut(s) 197, 261
Ecl136II GAGCTC 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 185
Eco53kI GAGCTC 1 cut(s) 183
EcoICRI GAGCTC 1 cut(s) 183
EcoT38I GRGCYC 1 cut(s) 185
FaeI CATG 3 cut(s) 461, 479, 493
FaiI YATR 9 cut(s) 227, 229, 278, 294, 369, 459, 477, 481, 491
FalI AAGNNNNNCTT 2 cut(s) 393, 425
FatI CATG 3 cut(s) 457, 475, 489
FauI CCCGC 2 cut(s) 65, 86
FauNDI CATATG 1 cut(s) 227
FblI GTMKAC 1 cut(s) 293
FokI GGATG 1 cut(s) 414
FriOI GRGCYC 1 cut(s) 185
Hin1II CATG 3 cut(s) 461, 479, 493
HinfI GANTC 1 cut(s) 145
Hpy166II GTNNAC 1 cut(s) 294
Hpy188I TCNGA 2 cut(s) 172, 259
Hpy188III TCNNGA 2 cut(s) 359, 394
Hpy8I GTNNAC 1 cut(s) 294
Hpy99I CGWCG 1 cut(s) 365
HpyAV CCTTC 2 cut(s) 238, 265
HpyCH4IV ACGT 1 cut(s) 340
HpyCH4V TGCA 2 cut(s) 199, 326
HpyF10VI GCNNNNNNNGC 1 cut(s) 480
HpyF3I CTNAG 1 cut(s) 171
HpySE526I ACGT 1 cut(s) 340
Hsp92II CATG 3 cut(s) 461, 479, 493
Kzo9I GATC 3 cut(s) 104, 213, 454
LmnI GCTCC 3 cut(s) 26, 113, 175
LpnPI CCDG 7 cut(s) 48, 96, 266, 314, 398, 407, 437
LweI GCATC 1 cut(s) 436
MaeII ACGT 1 cut(s) 340
MalI GATC 3 cut(s) 106, 215, 456
MboI GATC 3 cut(s) 104, 213, 454
MboII GAAGA 4 cut(s) 214, 219, 278, 416
MhlI GDGCHC 1 cut(s) 185
MluCI AATT 3 cut(s) 62, 193, 493
MnlI CCTC 5 cut(s) 129, 166, 241, 256, 308
MseI TTAA 1 cut(s) 93
MwoI GCNNNNNNNGC 1 cut(s) 480
NdeI CATATG 1 cut(s) 227
NdeII GATC 3 cut(s) 104, 213, 454
NlaIII CATG 3 cut(s) 461, 479, 493
PfeI GAWTC 1 cut(s) 145
Ple19I CGATCG 1 cut(s) 107
Psp124BI GAGCTC 1 cut(s) 185
PvuI CGATCG 1 cut(s) 107
SacI GAGCTC 1 cut(s) 185
SaqAI TTAA 1 cut(s) 93
Sau3AI GATC 3 cut(s) 104, 213, 454
SduI GDGCHC 1 cut(s) 185
SetI ASST 7 cut(s) 16, 118, 185, 343, 374, 387, 411
SfaNI GCATC 1 cut(s) 436
SmlI CTYRAG 2 cut(s) 184, 449
SmoI CTYRAG 2 cut(s) 184, 449
Sse9I AATT 3 cut(s) 62, 193, 493
SsiI CCGC 2 cut(s) 58, 79
SstI GAGCTC 1 cut(s) 185
TaiI ACGT 1 cut(s) 343
TaqI TCGA 4 cut(s) 103, 107, 219, 242
TasI AATT 3 cut(s) 62, 193, 493
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
XmiI GTMKAC 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.