Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0010456

Physical Location & Seq

Genomic Coordinates Reverse (-)

3516226 .. 3519124

Gene Structure 2899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0048800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGAGGTGGAGTTGGACTCAATTAGCAACTTACCAAGAGAGATTGTTGAAAAGATTTTGGCACGTTTGCCGATCAAGGAGGCAGTGAGGACAAGTATTTTATCGACCAAGTGGAGGTACAAACCAGCCATGCTTCAAAATCTAAAGTTTGATGAGCAATGTGTATCGACTCAGAACCATATCACCTTTGCTAATATTGTTGATCAAGTACTCTTACTTCACATTGGCCCCATACACAAGTTTGAGCTTTCTCATCGGGATTTTTTAGCCAGTGCTGATATTGATAGATGGGTTCTTCATCTATCAAGAAGCTGTGTCAAATGTTTGAAACTTGTAATCTGGAAGGGGCATCGCTACAAGTTGCCTTCAAGTTTCTTTTCTTGTCAAGACATAATTCATTTGCGGTTACATAATTGTATTCTAAAGCCTCCATCAACTTTCAGAGGCTTCAAGAGTTTGGAGCATCTTGACATTCGGCATGTTACGTTGGCCCAACATGCCTTTGAAGATTTTATTGTTTGTTGTCCTGTGCTTAAGAGACTGATTTTGAAATACTGTGATGGTTTCACAAATCTCTGCATCGATGCACCAAATCTCAAATTGCTTGATATAGATGGTAGTTTTGAGGATGTTAGTCTTCAGAATACCTTACATCTTGAACATGTTGACATCCGTTTGGAATTCAAAGTCAGATGGGTTGTGGGCGGTTCATCCAATTTGGTCAAGTTTTTCGTTCACCTACCTAATATTCGTGACCTTCAAATTTCAGGTTACGTTTTAAAGTTTTTGGCTGTTGGTCCCTTGCTACGAAAGCTGCCTCAACCAATACTATTTCTGAACGATCTTTATATGGACGTAAACTTCACTGATCTGGAGGAGATTACAACTGCTCTATGCCTTGTAAGAAGCTCCCCTGCTCTACGAAAACTAGAGATTGTGGTCAACCATATTGATTATCATCATGTTGTGGGAGAAGTGAACTCCTGGTTTGAAAATTTAGGCGAAAACTCAGATTGTCAACTCACTGAACTTCGACGTATAGAAATTGTTGCCATCTCTGATGCCAAAGCTGAACTAGATTTGATCAAATTGCTGCTGTTAAGTTCACCTGTACTGGAGTGCATGACTCTTAAGCCTTTTTCTGTGGATGGCTCTTTGGAACTGTTAAAACAGGTGGTCCGGTTTAGGCGTGCCTCGGTTCAGGCTGAGATAATCTTCTTGGACCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dabb

Protein Analysis

409

Amino Acids

47.0

Weight (kDa)

6.78

Isoelectric Point (pI)

46.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	8 - 39	8.1e-08	F-box domain
LRR_At1g61320_AtMIF1	PF23622	84 - 194	4e-10	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	94 - 312	1.3e-16	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32500 AT2G32500
fragaria_vesca	FvH4_5g01880
malus_domestica	MD06G1077000.v1.1
prunus_persica	Prupe.5G095100_v2.0.a1 Prupe.5G095100_v2.0.a1
pyrus_communis	pycom06g07460
rosa_chinensis	RchiOBHm_Chr7g0198641
rosa_laevigata	RLG00000003852
rosa_multiflora	Rmu_sc0000220.1_g000018 Rmu_sc0009374.1_g000002
rosa_roxburghii	Rroxscaffold_3G00257570
rosa_rugosa	Rorug07G0048600 Rorug07G0048700 Rorug07G0048800 Rorug07G0048800
rosa_samantha	Rh7AG172400 Rh7BG175900 Rh7CG181800 Rh7DG174700
rosa_wichuraiana	Rw7G015130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	403, 705
AcsI	RAATTY	3 cut(s)	680, 762, 994
AcuI	CTGAAG	1 cut(s)	623
AfaI	GTAC	3 cut(s)	119, 210, 1113
AfiI	CCNNNNNNNGG	1 cut(s)	114
AflII	CTTAAG	2 cut(s)	533, 1130
AflIII	ACRYGT	1 cut(s)	661
AjnI	CCWGG	1 cut(s)	983
AluBI	AGCT	5 cut(s)	247, 312, 814, 909, 1070
AluI	AGCT	5 cut(s)	247, 312, 814, 909, 1070
Alw26I	GTCTC	1 cut(s)	532
AoxI	GGCC	2 cut(s)	226, 489
ApeKI	GCWGC	2 cut(s)	814, 1093
ApoI	RAATTY	3 cut(s)	680, 762, 994
AspS9I	GGNCC	5 cut(s)	227, 490, 797, 1177, 1222
AsuHPI	GGTGA	3 cut(s)	175, 728, 1098
AvaII	GGWCC	3 cut(s)	797, 1177, 1222
BarI	GAAGNNNNNNTAC	2 cut(s)	201, 233
BbsI	GAAGAC	1 cut(s)	629
BbvI	GCAGC	2 cut(s)	801, 1080
BccI	CCATC	7 cut(s)	282, 439, 554, 608, 687, 1061, 1142
BciT130I	CCWGG	1 cut(s)	985
BclI	TGATCA	2 cut(s)	202, 1083
BcoDI	GTCTC	1 cut(s)	532
BfaI	CTAG	2 cut(s)	929, 1076
BfrI	CTTAAG	2 cut(s)	533, 1130
BisI	GCNGC	2 cut(s)	815, 1094
BlsI	GCNGC	2 cut(s)	816, 1095
BmcAI	AGTACT	1 cut(s)	210
Bme1390I	CCNGG	1 cut(s)	985
Bme18I	GGWCC	3 cut(s)	797, 1177, 1222
BmgT120I	GGNCC	5 cut(s)	227, 490, 797, 1177, 1222
BmiI	GGNNCC	3 cut(s)	229, 799, 1224
BmrFI	CCNGG	1 cut(s)	985
BmsI	GCATC	5 cut(s)	358, 472, 574, 588, 1051
BpiI	GAAGAC	1 cut(s)	629
BplI	GAGNNNNNCTC	1 cut(s)	34
BpmI	CTGGAG	2 cut(s)	893, 1136
Bsa29I	ATCGAT	1 cut(s)	582
BsaBI	GATNNNNATC	1 cut(s)	957
BsaJI	CCNNGG	1 cut(s)	1194
BsaWI	WCCGGW	1 cut(s)	1179
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	114
Bse1I	ACTGG	2 cut(s)	270, 1119
Bse3DI	GCAATG	1 cut(s)	164
Bse8I	GATNNNNATC	1 cut(s)	957
BseBI	CCWGG	1 cut(s)	985
BseCI	ATCGAT	1 cut(s)	582
BseDI	CCNNGG	1 cut(s)	1194
BseGI	GGATG	4 cut(s)	634, 669, 710, 1153
BseJI	GATNNNNATC	1 cut(s)	957
BseLI	CCNNNNNNNGG	1 cut(s)	114
BseMI	GCAATG	1 cut(s)	164
BseMII	CTCAG	3 cut(s)	185, 1023, 1197
BseNI	ACTGG	2 cut(s)	270, 1119
BseRI	GAGGAG	1 cut(s)	890
BseXI	GCAGC	2 cut(s)	801, 1080
BshFI	GGCC	2 cut(s)	228, 491
BshVI	ATCGAT	1 cut(s)	582
BsiSI	CCGG	1 cut(s)	1180
BslFI	GGGAC	1 cut(s)	783
BslI	CCNNNNNNNGG	1 cut(s)	114
BsmAI	GTCTC	1 cut(s)	532
BsmFI	GGGAC	1 cut(s)	783
BsnI	GGCC	2 cut(s)	228, 491
Bsp143I	GATC	5 cut(s)	72, 202, 841, 868, 1083
BspACI	CCGC	2 cut(s)	403, 705
BspANI	GGCC	2 cut(s)	228, 491
BspCNI	CTCAG	3 cut(s)	184, 1022, 1198
BspDI	ATCGAT	1 cut(s)	582
BspLI	GGNNCC	3 cut(s)	229, 799, 1224
BspTI	CTTAAG	2 cut(s)	533, 1130
BsrDI	GCAATG	1 cut(s)	164
BsrI	ACTGG	2 cut(s)	270, 1119
BssECI	CCNNGG	1 cut(s)	1194
BssMI	GATC	5 cut(s)	72, 202, 841, 868, 1083
Bst2UI	CCWGG	1 cut(s)	985
Bst4CI	ACNGT	2 cut(s)	557, 1164
BstAFI	CTTAAG	2 cut(s)	533, 1130
BstC8I	GCNNGC	1 cut(s)	1191
BstDEI	CTNAG	3 cut(s)	171, 1009, 1206
BstF5I	GGATG	4 cut(s)	634, 669, 710, 1153
BstKTI	GATC	5 cut(s)	75, 205, 844, 871, 1086
BstMAI	GTCTC	1 cut(s)	532
BstMBI	GATC	5 cut(s)	72, 202, 841, 868, 1083
BstMWI	GCNNNNNNNGC	2 cut(s)	497, 811
BstNI	CCWGG	1 cut(s)	985
BstNSI	RCATGY	3 cut(s)	482, 500, 665
BstSCI	CCNGG	1 cut(s)	983
BstV1I	GCAGC	2 cut(s)	801, 1080
BstV2I	GAAGAC	1 cut(s)	629
Bsu15I	ATCGAT	1 cut(s)	582
BsuRI	GGCC	2 cut(s)	228, 491
BsuTUI	ATCGAT	1 cut(s)	582
BtgZI	GCGATG	1 cut(s)	335
BtsCI	GGATG	4 cut(s)	634, 669, 710, 1153
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	4 cut(s)	90, 277, 864, 1023
Cac8I	GCNNGC	1 cut(s)	1191
Cfr13I	GGNCC	5 cut(s)	227, 490, 797, 1177, 1222
ClaI	ATCGAT	1 cut(s)	582
Csp6I	GTAC	3 cut(s)	118, 209, 1112
CviAII	CATG	6 cut(s)	130, 479, 497, 662, 962, 1123
CviQI	GTAC	3 cut(s)	118, 209, 1112
DdeI	CTNAG	3 cut(s)	171, 1009, 1206
DpnI	GATC	5 cut(s)	74, 204, 843, 870, 1085
DpnII	GATC	5 cut(s)	72, 202, 841, 868, 1083
DraI	TTTAAA	1 cut(s)	780
Eco47I	GGWCC	3 cut(s)	797, 1177, 1222
Eco57I	CTGAAG	1 cut(s)	623
EcoRI	GAATTC	1 cut(s)	680
EcoRII	CCWGG	1 cut(s)	983
FaeI	CATG	6 cut(s)	133, 482, 500, 665, 965, 1126
FaqI	GGGAC	1 cut(s)	783
FatI	CATG	6 cut(s)	129, 478, 496, 661, 961, 1122
FbaI	TGATCA	2 cut(s)	202, 1083
Fnu4HI	GCNGC	2 cut(s)	815, 1094
FokI	GGATG	4 cut(s)	641, 656, 697, 1160
Fsp4HI	GCNGC	2 cut(s)	815, 1094
FspBI	CTAG	2 cut(s)	929, 1076
GluI	GCNGC	2 cut(s)	815, 1094
GsuI	CTGGAG	2 cut(s)	893, 1136
HaeIII	GGCC	2 cut(s)	228, 491
HapII	CCGG	1 cut(s)	1180
Hin1II	CATG	6 cut(s)	133, 482, 500, 665, 965, 1126
HincII	GTYRAC	3 cut(s)	667, 943, 1019
HindII	GTYRAC	3 cut(s)	667, 943, 1019
HinfI	GANTC	3 cut(s)	17, 169, 1126
HpaII	CCGG	1 cut(s)	1180
HphI	GGTGA	3 cut(s)	175, 728, 1098
Hpy166II	GTNNAC	7 cut(s)	667, 736, 859, 943, 979, 1019, 1106
Hpy188I	TCNGA	7 cut(s)	174, 443, 642, 692, 837, 1012, 1060
Hpy188III	TCNNGA	9 cut(s)	257, 306, 340, 386, 451, 467, 656, 752, 872
Hpy8I	GTNNAC	7 cut(s)	667, 736, 859, 943, 979, 1019, 1106
Hpy99I	CGWCG	1 cut(s)	1038
HpyAV	CCTTC	3 cut(s)	337, 375, 767
HpyCH4III	ACNGT	2 cut(s)	557, 1164
HpyCH4IV	ACGT	5 cut(s)	64, 485, 774, 855, 1036
HpyCH4V	TGCA	3 cut(s)	579, 587, 1122
HpyF10VI	GCNNNNNNNGC	2 cut(s)	497, 811
HpyF3I	CTNAG	3 cut(s)	171, 1009, 1206
HpySE526I	ACGT	5 cut(s)	64, 485, 774, 855, 1036
Hsp92II	CATG	6 cut(s)	133, 482, 500, 665, 965, 1126
Ksp22I	TGATCA	2 cut(s)	202, 1083
Kzo9I	GATC	5 cut(s)	72, 202, 841, 868, 1083
LmnI	GCTCC	2 cut(s)	460, 914
Lsp1109I	GCAGC	2 cut(s)	801, 1080
LweI	GCATC	5 cut(s)	358, 472, 574, 588, 1051
MaeI	CTAG	2 cut(s)	929, 1076
MaeII	ACGT	5 cut(s)	64, 485, 774, 855, 1036
MaeIII	GTNAC	4 cut(s)	405, 481, 752, 770
MalI	GATC	5 cut(s)	74, 204, 843, 870, 1085
MboI	GATC	5 cut(s)	72, 202, 841, 868, 1083
MboII	GAAGA	4 cut(s)	287, 518, 629, 1207
MlyI	GAGTC	3 cut(s)	11, 163, 1120
MnlI	CCTC	9 cut(s)	73, 81, 108, 437, 438, 619, 828, 868, 1204
MseI	TTAA	5 cut(s)	534, 779, 1100, 1131, 1166
MspCI	CTTAAG	2 cut(s)	533, 1130
MspI	CCGG	1 cut(s)	1180
MspR9I	CCNGG	1 cut(s)	985
MvaI	CCWGG	1 cut(s)	985
MwoI	GCNNNNNNNGC	2 cut(s)	497, 811
NdeII	GATC	5 cut(s)	72, 202, 841, 868, 1083
NlaIII	CATG	6 cut(s)	133, 482, 500, 665, 965, 1126
NlaIV	GGNNCC	3 cut(s)	229, 799, 1224
NmuCI	GTSAC	1 cut(s)	752
NspI	RCATGY	3 cut(s)	482, 500, 665
PciI	ACATGT	1 cut(s)	661
PkrI	GCNGC	2 cut(s)	816, 1095
PleI	GAGTC	3 cut(s)	11, 163, 1120
PpsI	GAGTC	3 cut(s)	11, 163, 1120
PscI	ACATGT	1 cut(s)	661
Psp6I	CCWGG	1 cut(s)	983
PspGI	CCWGG	1 cut(s)	983
PspN4I	GGNNCC	3 cut(s)	229, 799, 1224
PspPI	GGNCC	5 cut(s)	227, 490, 797, 1177, 1222
RsaI	GTAC	3 cut(s)	119, 210, 1113
RsaNI	GTAC	3 cut(s)	118, 209, 1112
SaqAI	TTAA	5 cut(s)	534, 779, 1100, 1131, 1166
SatI	GCNGC	2 cut(s)	815, 1094
Sau3AI	GATC	5 cut(s)	72, 202, 841, 868, 1083
Sau96I	GGNCC	5 cut(s)	227, 490, 797, 1177, 1222
ScaI	AGTACT	1 cut(s)	210
SchI	GAGTC	3 cut(s)	11, 163, 1120
ScrFI	CCNGG	1 cut(s)	985
SfaNI	GCATC	5 cut(s)	358, 472, 574, 588, 1051
SinI	GGWCC	3 cut(s)	797, 1177, 1222
SmlI	CTYRAG	2 cut(s)	533, 1130
SmoI	CTYRAG	2 cut(s)	533, 1130
SsiI	CCGC	2 cut(s)	403, 705
SspI	AATATT	2 cut(s)	196, 748
SspMI	CTAG	2 cut(s)	929, 1076
StyD4I	CCNGG	1 cut(s)	983
TaaI	ACNGT	2 cut(s)	557, 1164
TaiI	ACGT	5 cut(s)	67, 488, 777, 858, 1039
TaqI	TCGA	4 cut(s)	104, 167, 582, 1033
TatI	WGTACW	2 cut(s)	208, 1111
Tru1I	TTAA	5 cut(s)	534, 779, 1100, 1131, 1166
Tru9I	TTAA	5 cut(s)	534, 779, 1100, 1131, 1166
TscAI	CASTG	4 cut(s)	90, 277, 871, 1030
TseFI	GTSAC	1 cut(s)	752
TseI	GCWGC	2 cut(s)	814, 1093
Tsp45I	GTSAC	1 cut(s)	752
TspDTI	ATGAA	3 cut(s)	287, 386, 699
TspGWI	ACGGA	1 cut(s)	662
TspRI	CASTG	4 cut(s)	90, 277, 871, 1030
Vha464I	CTTAAG	2 cut(s)	533, 1130
VpaK11BI	GGWCC	3 cut(s)	797, 1177, 1222
XapI	RAATTY	3 cut(s)	680, 762, 994
XceI	RCATGY	3 cut(s)	482, 500, 665
XspI	CTAG	2 cut(s)	929, 1076
ZrmI	AGTACT	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.