Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0010456

Physical Location & Seq

Genomic Coordinates Forward (+)

10482491 .. 10485302

Gene Structure 2812 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G095100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGCTCATTCAATCTCAGTGCTCCGTCCTCTCTCCCATTCGCCTCACAAACCCTCACCGCAGTTTACCAATCATCTCCCGCCGTGCCCCTTTTAACGCATGTCGAATGAATGGAGCTGTTGTGATCAGTACATGGTTGGGGAGGAAAAAGAATCGGGGAGTGACAGTTTCGGCTACGGAGGAGCAGAGCTCAAGCCTCAATGTGCAGAAGAAAAGAAAGGTTGTTGACCACATATGCCTACTGAAAGCAAAGGAGGATTTATCTGATGAGGAAGAGAAGGATATGCTGGATTTTCTTTATACAACCCAGTATCAAATGCGAGGCATTCTTTCGGTATCATTAGGGCGTATCTTGAATGAAAATATCGACAAGTATACACATGCTGTCTACATGCGTTTCCAGAGAAAAGAAGACATTGGGAAGTTTTACGAGAACCCTTTCTACTTGCGAGTACTCAATGAGCATGTATTGCCTTACTGCCATGGATTGACTAATGTGGATTACGAATCTGAAGTAGAAGACGATATCATACCTATATTCCGCAAAGGAGAGGAATTCAACTTCGGTGTGGAGTTTGTGCTTCTTCTTTCCTTGGTTGATAATGCATCTGGACCCGTGGAAGAGGCATTGGTTTCTTTGGAAGGGCTTATTATGGGATTTCCATCCATAATAGTCCAATCTACTCAAGGTCTGAATTTTAATCCCAGCAGCAAGGAGTTTACACATGGAGTAGTGATCAGATTTCGGTCTCTTGACGCTTTTGAGATATTTGTGGGAAGCTCAGAGTACAAAGAAATATGGAAGTCTAAGTTTGATCAAATCACTCGGAAAACACTTTCGCTTCATTTTTCAGTTGATCCAGTCGGCAGTGAGATTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dabb

Protein Analysis

294

Amino Acids

33.48

Weight (kDa)

6.02

Isoelectric Point (pI)

44.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32500 AT2G32500
fragaria_vesca	FvH4_5g01880
malus_domestica	MD06G1077000.v1.1
prunus_persica	Prupe.5G095100_v2.0.a1 Prupe.5G095100_v2.0.a1
pyrus_communis	pycom06g07460
rosa_chinensis	RchiOBHm_Chr7g0198641
rosa_laevigata	RLG00000003852
rosa_multiflora	Rmu_sc0000220.1_g000018 Rmu_sc0009374.1_g000002
rosa_roxburghii	Rroxscaffold_3G00257570
rosa_rugosa	Rorug07G0048600 Rorug07G0048700 Rorug07G0048800 Rorug07G0048800
rosa_samantha	Rh7AG172400 Rh7BG175900 Rh7CG181800 Rh7DG174700
rosa_wichuraiana	Rw7G015130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	374, 387
AciI	CCGC	3 cut(s)	58, 79, 541
AclWI	GGATC	1 cut(s)	851
AcsI	RAATTY	2 cut(s)	554, 694
AcuI	CTGAAG	1 cut(s)	531
AfaI	GTAC	3 cut(s)	130, 453, 788
AgsI	TTSAA	3 cut(s)	11, 355, 559
AluBI	AGCT	3 cut(s)	116, 189, 780
AluI	AGCT	3 cut(s)	116, 189, 780
Alw21I	GWGCWC	2 cut(s)	23, 191
Alw26I	GTCTC	1 cut(s)	753
AlwI	GGATC	1 cut(s)	851
ApeKI	GCWGC	1 cut(s)	708
ApoI	RAATTY	2 cut(s)	554, 694
Asp700I	GAANNNNTTC	1 cut(s)	437
AspS9I	GGNCC	1 cut(s)	611
AsuHPI	GGTGA	1 cut(s)	47
AvaII	GGWCC	1 cut(s)	611
BaeGI	GKGCMC	1 cut(s)	88
BanII	GRGCYC	1 cut(s)	191
BbsI	GAAGAC	2 cut(s)	417, 525
Bbv12I	GWGCWC	2 cut(s)	23, 191
BbvI	GCAGC	1 cut(s)	720
BccI	CCATC	1 cut(s)	670
BceAI	ACGGC	1 cut(s)	66
BclI	TGATCA	3 cut(s)	123, 735, 814
BcoDI	GTCTC	1 cut(s)	753
BisI	GCNGC	1 cut(s)	709
BlsI	GCNGC	1 cut(s)	710
BmcAI	AGTACT	1 cut(s)	453
Bme18I	GGWCC	1 cut(s)	611
BmgT120I	GGNCC	1 cut(s)	611
BmiI	GGNNCC	1 cut(s)	613
BmrI	ACTGGG	1 cut(s)	301
BmsI	GCATC	1 cut(s)	614
BmuI	ACTGGG	1 cut(s)	301
BpiI	GAAGAC	2 cut(s)	417, 525
BplI	GAGNNNNNCTC	2 cut(s)	173, 205
BpuEI	CTTGAG	2 cut(s)	175, 669
BsaBI	GATNNNNATC	1 cut(s)	661
BsaI	GGTCTC	1 cut(s)	753
BsaJI	CCNNGG	3 cut(s)	481, 591, 615
BsaXI	ACNNNNNCTCC	4 cut(s)	105, 135, 150, 180
Bse1I	ACTGG	2 cut(s)	307, 860
Bse8I	GATNNNNATC	1 cut(s)	661
BseDI	CCNNGG	3 cut(s)	481, 591, 615
BseGI	GGATG	1 cut(s)	662
BseJI	GATNNNNATC	1 cut(s)	661
BseMII	CTCAG	2 cut(s)	29, 795
BseNI	ACTGG	2 cut(s)	307, 860
BseRI	GAGGAG	1 cut(s)	194
BseSI	GKGCMC	1 cut(s)	88
BseXI	GCAGC	1 cut(s)	720
BseYI	CCCAGC	1 cut(s)	704
BsgI	GTGCAG	1 cut(s)	224
BsiHKAI	GWGCWC	2 cut(s)	23, 191
BsmAI	GTCTC	1 cut(s)	753
BsmI	GAATGC	1 cut(s)	324
Bso31I	GGTCTC	1 cut(s)	753
Bsp1286I	GDGCHC	3 cut(s)	23, 88, 191
Bsp143I	GATC	4 cut(s)	123, 735, 814, 856
Bsp19I	CCATGG	1 cut(s)	481
BspACI	CCGC	3 cut(s)	58, 79, 541
BspCNI	CTCAG	2 cut(s)	28, 794
BspLI	GGNNCC	1 cut(s)	613
BspPI	GGATC	1 cut(s)	851
BspTNI	GGTCTC	1 cut(s)	753
BsrI	ACTGG	2 cut(s)	307, 860
BssECI	CCNNGG	3 cut(s)	481, 591, 615
BssMI	GATC	4 cut(s)	123, 735, 814, 856
BssNAI	GTATAC	1 cut(s)	375
BssT1I	CCWWGG	2 cut(s)	481, 591
Bst1107I	GTATAC	1 cut(s)	375
Bst4CI	ACNGT	1 cut(s)	166
Bst6I	CTCTTC	2 cut(s)	267, 615
BstAPI	GCANNNNNTGC	1 cut(s)	469
BstDEI	CTNAG	3 cut(s)	15, 781, 807
BstDSI	CCRYGG	2 cut(s)	481, 615
BstF5I	GGATG	1 cut(s)	662
BstKTI	GATC	4 cut(s)	126, 738, 817, 859
BstMAI	GTCTC	1 cut(s)	753
BstMBI	GATC	4 cut(s)	123, 735, 814, 856
BstMWI	GCNNNNNNNGC	1 cut(s)	469
BstNSI	RCATGY	4 cut(s)	102, 383, 394, 467
BstSLI	GKGCMC	1 cut(s)	88
BstV1I	GCAGC	1 cut(s)	720
BstV2I	GAAGAC	2 cut(s)	417, 525
BstZ17I	GTATAC	1 cut(s)	375
BtgI	CCRYGG	2 cut(s)	481, 615
BtsCI	GGATG	1 cut(s)	662
BtsI	GCAGTG	1 cut(s)	874
BtsIMutI	CAGTG	2 cut(s)	23, 874
Cfr13I	GGNCC	1 cut(s)	611
CseI	GACGC	1 cut(s)	764
Csp6I	GTAC	3 cut(s)	129, 452, 787
CviAII	CATG	7 cut(s)	99, 132, 380, 391, 464, 482, 725
CviJI	RGCY	6 cut(s)	116, 173, 189, 195, 646, 780
CviKI_1	RGCY	6 cut(s)	116, 173, 189, 195, 646, 780
CviQI	GTAC	3 cut(s)	129, 452, 787
DdeI	CTNAG	3 cut(s)	15, 781, 807
DpnI	GATC	4 cut(s)	125, 737, 816, 858
DpnII	GATC	4 cut(s)	123, 735, 814, 856
Eam1104I	CTCTTC	2 cut(s)	267, 615
EarI	CTCTTC	2 cut(s)	267, 615
Ecl136II	GAGCTC	1 cut(s)	189
Eco130I	CCWWGG	2 cut(s)	481, 591
Eco24I	GRGCYC	1 cut(s)	191
Eco31I	GGTCTC	1 cut(s)	753
Eco32I	GATATC	1 cut(s)	526
Eco47I	GGWCC	1 cut(s)	611
Eco53kI	GAGCTC	1 cut(s)	189
Eco57I	CTGAAG	1 cut(s)	531
EcoICRI	GAGCTC	1 cut(s)	189
EcoRI	GAATTC	1 cut(s)	554
EcoRV	GATATC	1 cut(s)	526
EcoT14I	CCWWGG	2 cut(s)	481, 591
EcoT22I	ATGCAT	1 cut(s)	607
EcoT38I	GRGCYC	1 cut(s)	191
ErhI	CCWWGG	2 cut(s)	481, 591
FaeI	CATG	7 cut(s)	102, 135, 383, 394, 467, 485, 728
FatI	CATG	7 cut(s)	98, 131, 379, 390, 463, 481, 724
FauI	CCCGC	1 cut(s)	86
FauNDI	CATATG	1 cut(s)	233
FbaI	TGATCA	3 cut(s)	123, 735, 814
FblI	GTMKAC	2 cut(s)	374, 387
Fnu4HI	GCNGC	1 cut(s)	709
FokI	GGATG	1 cut(s)	649
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	1 cut(s)	709
GluI	GCNGC	1 cut(s)	709
GsaI	CCCAGC	1 cut(s)	708
HgaI	GACGC	1 cut(s)	764
Hin1II	CATG	7 cut(s)	102, 135, 383, 394, 467, 485, 728
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	2 cut(s)	151, 506
HphI	GGTGA	1 cut(s)	47
Hpy166II	GTNNAC	5 cut(s)	65, 226, 375, 388, 720
Hpy188I	TCNGA	6 cut(s)	265, 511, 693, 740, 784, 828
Hpy188III	TCNNGA	4 cut(s)	352, 400, 609, 752
Hpy8I	GTNNAC	5 cut(s)	65, 226, 375, 388, 720
HpyAV	CCTTC	2 cut(s)	271, 635
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4V	TGCA	2 cut(s)	205, 605
HpyF10VI	GCNNNNNNNGC	1 cut(s)	469
HpyF3I	CTNAG	3 cut(s)	15, 781, 807
Hsp92II	CATG	7 cut(s)	102, 135, 383, 394, 467, 485, 728
Ksp22I	TGATCA	3 cut(s)	123, 735, 814
Kzo9I	GATC	4 cut(s)	123, 735, 814, 856
LmnI	GCTCC	3 cut(s)	26, 113, 181
LpnPI	CCDG	6 cut(s)	272, 320, 413, 594, 718, 873
Lsp1109I	GCAGC	1 cut(s)	720
LweI	GCATC	1 cut(s)	614
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	4 cut(s)	125, 737, 816, 858
MboI	GATC	4 cut(s)	123, 735, 814, 856
MboII	GAAGA	6 cut(s)	220, 284, 422, 530, 575, 632
MhlI	GDGCHC	3 cut(s)	23, 88, 191
MluCI	AATT	2 cut(s)	554, 694
Mph1103I	ATGCAT	1 cut(s)	607
MroXI	GAANNNNTTC	1 cut(s)	437
MseI	TTAA	2 cut(s)	93, 699
Mva1269I	GAATGC	1 cut(s)	324
MwoI	GCNNNNNNNGC	1 cut(s)	469
NcoI	CCATGG	1 cut(s)	481
NdeI	CATATG	1 cut(s)	233
NdeII	GATC	4 cut(s)	123, 735, 814, 856
NlaIII	CATG	7 cut(s)	102, 135, 383, 394, 467, 485, 728
NlaIV	GGNNCC	1 cut(s)	613
NmuCI	GTSAC	1 cut(s)	160
NsiI	ATGCAT	1 cut(s)	607
NspI	RCATGY	4 cut(s)	102, 383, 394, 467
PctI	GAATGC	1 cut(s)	324
PdmI	GAANNNNTTC	1 cut(s)	437
PfeI	GAWTC	2 cut(s)	151, 506
PkrI	GCNGC	1 cut(s)	710
Psp124BI	GAGCTC	1 cut(s)	191
PspFI	CCCAGC	1 cut(s)	704
PspN4I	GGNNCC	1 cut(s)	613
PspPI	GGNCC	1 cut(s)	611
PsrI	GAACNNNNNNTAC	2 cut(s)	425, 457
RsaI	GTAC	3 cut(s)	130, 453, 788
RsaNI	GTAC	3 cut(s)	129, 452, 787
SacI	GAGCTC	1 cut(s)	191
SaqAI	TTAA	2 cut(s)	93, 699
SatI	GCNGC	1 cut(s)	709
Sau3AI	GATC	4 cut(s)	123, 735, 814, 856
Sau96I	GGNCC	1 cut(s)	611
ScaI	AGTACT	1 cut(s)	453
SduI	GDGCHC	3 cut(s)	23, 88, 191
SetI	ASST	6 cut(s)	118, 191, 222, 535, 691, 782
SfaNI	GCATC	1 cut(s)	614
SinI	GGWCC	1 cut(s)	611
SmlI	CTYRAG	2 cut(s)	190, 684
SmoI	CTYRAG	2 cut(s)	190, 684
Sse9I	AATT	2 cut(s)	554, 694
SsiI	CCGC	3 cut(s)	58, 79, 541
SstI	GAGCTC	1 cut(s)	191
StyI	CCWWGG	2 cut(s)	481, 591
TaaI	ACNGT	1 cut(s)	166
TaqI	TCGA	2 cut(s)	103, 366
TaqII	GACCGA	1 cut(s)	735
TasI	AATT	2 cut(s)	554, 694
TatI	WGTACW	3 cut(s)	128, 451, 786
TfiI	GAWTC	2 cut(s)	151, 506
Tru1I	TTAA	2 cut(s)	93, 699
Tru9I	TTAA	2 cut(s)	93, 699
TscAI	CASTG	2 cut(s)	23, 874
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	1 cut(s)	708
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	3 cut(s)	122, 372, 833
TspGWI	ACGGA	2 cut(s)	13, 191
TspRI	CASTG	2 cut(s)	23, 874
VpaK11BI	GGWCC	1 cut(s)	611
XapI	RAATTY	2 cut(s)	554, 694
XceI	RCATGY	4 cut(s)	102, 383, 394, 467
XmiI	GTMKAC	2 cut(s)	374, 387
XmnI	GAANNNNTTC	1 cut(s)	437
ZrmI	AGTACT	1 cut(s)	453
Zsp2I	ATGCAT	1 cut(s)	607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.