Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0010456

Physical Location & Seq

Genomic Coordinates Forward (+)

12107084 .. 12108289

Gene Structure 1206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g07460.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGCTCATTCAATCTCAGTGCTCCGTACTCTCTCCCATTCGCCTCACAAACCCCCGTGGCCGGTGCCTTCTCATTCCCCGCCCTGCCCCTTTTAACGTTTTCCGATCGTACGGAGTTGTGAGAACATGGCTGGGGAAGAAAAAGAATGGGGGAGTGTTGGTTTCGGCTACGGAGGAGCAGAGCTCGAGCCTCAATGTGCAGAAGAAAAGGAAAATTGTCGAACATGTAAGCCTGCTCAAAGCGAAGCAGGATTTATCTGATGAAGAAGAGAAGGATATGCTGGATTATCTCTATACAACCCAGTATCAAATGCGAGGCATTCTCGCAATATCACTAGGACGTGTCTCTGATCAAAACCCTGACAAGTATACCCATGCTGTCTACATGCGCTTCCAGAGAAAAGAAGACATTGGCAAGTTTTATGAGAACCCCTTCTACATGCGAGTTCTGAAGGAGCATGTCTTCCCTTACTGCCATGTATGCCCTGACATGAATTGCTTAATGTCCACTACGAATCTGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dabb

Protein Analysis

175

Amino Acids

20.2

Weight (kDa)

9.38

Isoelectric Point (pI)

45.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32500 AT2G32500
fragaria_vesca	FvH4_5g01880
malus_domestica	MD06G1077000.v1.1
prunus_persica	Prupe.5G095100_v2.0.a1 Prupe.5G095100_v2.0.a1
pyrus_communis	pycom06g07460
rosa_chinensis	RchiOBHm_Chr7g0198641
rosa_laevigata	RLG00000003852
rosa_multiflora	Rmu_sc0000220.1_g000018 Rmu_sc0009374.1_g000002
rosa_roxburghii	Rroxscaffold_3G00257570
rosa_rugosa	Rorug07G0048600 Rorug07G0048700 Rorug07G0048800 Rorug07G0048800
rosa_samantha	Rh7AG172400 Rh7BG175900 Rh7CG181800 Rh7DG174700
rosa_wichuraiana	Rw7G015130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	63
AccI	GTMKAC	2 cut(s)	368, 381
AciI	CCGC	1 cut(s)	79
AclI	AACGTT	1 cut(s)	96
AcoI	YGGCCR	1 cut(s)	58
AcuI	CTGAAG	1 cut(s)	470
AfaI	GTAC	2 cut(s)	27, 110
AfiI	CCNNNNNNNGG	1 cut(s)	60
AflIII	ACRYGT	2 cut(s)	223, 340
AgsI	TTSAA	1 cut(s)	11
AjiI	CACGTC	1 cut(s)	341
AluBI	AGCT	1 cut(s)	183
AluI	AGCT	1 cut(s)	183
Alw21I	GWGCWC	2 cut(s)	23, 185
Alw26I	GTCTC	1 cut(s)	349
Ama87I	CYCGRG	1 cut(s)	184
AoxI	GGCC	1 cut(s)	58
Asp700I	GAANNNNTTC	1 cut(s)	431
AspLEI	GCGC	1 cut(s)	390
AvaI	CYCGRG	1 cut(s)	184
BanI	GGYRCC	1 cut(s)	63
BanII	GRGCYC	1 cut(s)	185
BbsI	GAAGAC	2 cut(s)	411, 454
Bbv12I	GWGCWC	2 cut(s)	23, 185
BclI	TGATCA	1 cut(s)	349
BcoDI	GTCTC	1 cut(s)	349
BfaI	CTAG	1 cut(s)	335
BmeT110I	CYCGRG	1 cut(s)	184
BmgBI	CACGTC	1 cut(s)	341
BmiI	GGNNCC	1 cut(s)	65
BmrI	ACTGGG	1 cut(s)	295
BmuI	ACTGGG	1 cut(s)	295
BpiI	GAAGAC	2 cut(s)	411, 454
BplI	GAGNNNNNCTC	4 cut(s)	167, 199, 306, 338
BsaJI	CCNNGG	1 cut(s)	55
BsaXI	ACNNNNNCTCC	2 cut(s)	144, 174
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
Bse118I	RCCGGY	1 cut(s)	60
Bse1I	ACTGG	1 cut(s)	301
BseDI	CCNNGG	1 cut(s)	55
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseMII	CTCAG	1 cut(s)	29
BseNI	ACTGG	1 cut(s)	301
BseRI	GAGGAG	1 cut(s)	188
BseYI	CCCAGC	1 cut(s)	130
BsgI	GTGCAG	1 cut(s)	218
Bsh1285I	CGRYCG	1 cut(s)	107
BshFI	GGCC	1 cut(s)	60
BshNI	GGYRCC	1 cut(s)	63
BsiEI	CGRYCG	1 cut(s)	107
BsiHKAI	GWGCWC	2 cut(s)	23, 185
BsiHKCI	CYCGRG	1 cut(s)	184
BsiSI	CCGG	1 cut(s)	61
BsiWI	CGTACG	1 cut(s)	108
BslI	CCNNNNNNNGG	1 cut(s)	60
BsmAI	GTCTC	1 cut(s)	349
BsmI	GAATGC	1 cut(s)	318
BsnI	GGCC	1 cut(s)	60
BsoBI	CYCGRG	1 cut(s)	184
Bsp1286I	GDGCHC	2 cut(s)	23, 185
Bsp143I	GATC	2 cut(s)	104, 349
BspACI	CCGC	1 cut(s)	79
BspANI	GGCC	1 cut(s)	60
BspCNI	CTCAG	1 cut(s)	28
BspLI	GGNNCC	1 cut(s)	65
BspT107I	GGYRCC	1 cut(s)	63
BsrFI	RCCGGY	1 cut(s)	60
BsrI	ACTGG	1 cut(s)	301
BssAI	RCCGGY	1 cut(s)	60
BssECI	CCNNGG	1 cut(s)	55
BssMI	GATC	2 cut(s)	104, 349
BssNAI	GTATAC	1 cut(s)	369
Bst1107I	GTATAC	1 cut(s)	369
Bst6I	CTCTTC	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	233
BstDEI	CTNAG	1 cut(s)	15
BstDSI	CCRYGG	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	390
BstKTI	GATC	2 cut(s)	107, 352
BstMAI	GTCTC	1 cut(s)	349
BstMBI	GATC	2 cut(s)	104, 349
BstMCI	CGRYCG	1 cut(s)	107
BstMWI	GCNNNNNNNGC	1 cut(s)	480
BstNSI	RCATGY	4 cut(s)	227, 388, 442, 461
BstV2I	GAAGAC	2 cut(s)	411, 454
BstZ17I	GTATAC	1 cut(s)	369
BsuRI	GGCC	1 cut(s)	60
BtgI	CCRYGG	1 cut(s)	55
BtrI	CACGTC	1 cut(s)	341
BtsIMutI	CAGTG	1 cut(s)	23
Cac8I	GCNNGC	1 cut(s)	233
CfoI	GCGC	1 cut(s)	390
Cfr10I	RCCGGY	1 cut(s)	60
Csp6I	GTAC	2 cut(s)	26, 109
CviAII	CATG	8 cut(s)	126, 224, 374, 385, 439, 458, 476, 490
CviJI	RGCY	6 cut(s)	60, 130, 167, 183, 189, 231
CviKI_1	RGCY	6 cut(s)	60, 130, 167, 183, 189, 231
CviQI	GTAC	2 cut(s)	26, 109
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	2 cut(s)	106, 351
DpnII	GATC	2 cut(s)	104, 349
EaeI	YGGCCR	1 cut(s)	58
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
Ecl136II	GAGCTC	1 cut(s)	183
Eco24I	GRGCYC	1 cut(s)	185
Eco53kI	GAGCTC	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	470
Eco88I	CYCGRG	1 cut(s)	184
EcoICRI	GAGCTC	1 cut(s)	183
EcoT38I	GRGCYC	1 cut(s)	185
FaeI	CATG	8 cut(s)	129, 227, 377, 388, 442, 461, 479, 493
FatI	CATG	8 cut(s)	125, 223, 373, 384, 438, 457, 475, 489
FauI	CCCGC	1 cut(s)	86
FbaI	TGATCA	1 cut(s)	349
FblI	GTMKAC	2 cut(s)	368, 381
FriOI	GRGCYC	1 cut(s)	185
FspBI	CTAG	1 cut(s)	335
GlaI	GCGC	1 cut(s)	389
GsaI	CCCAGC	1 cut(s)	134
HaeIII	GGCC	1 cut(s)	60
HapII	CCGG	1 cut(s)	61
HhaI	GCGC	1 cut(s)	390
Hin1II	CATG	8 cut(s)	129, 227, 377, 388, 442, 461, 479, 493
Hin6I	GCGC	1 cut(s)	388
HinP1I	GCGC	1 cut(s)	388
HinfI	GANTC	1 cut(s)	514
HpaII	CCGG	1 cut(s)	61
Hpy166II	GTNNAC	3 cut(s)	369, 382, 507
Hpy188I	TCNGA	5 cut(s)	104, 259, 349, 450, 519
Hpy188III	TCNNGA	1 cut(s)	394
Hpy8I	GTNNAC	3 cut(s)	369, 382, 507
HpyAV	CCTTC	4 cut(s)	77, 265, 442, 445
HpyCH4IV	ACGT	2 cut(s)	96, 340
HpyCH4V	TGCA	1 cut(s)	199
HpyF10VI	GCNNNNNNNGC	1 cut(s)	480
HpyF3I	CTNAG	1 cut(s)	15
HpySE526I	ACGT	2 cut(s)	96, 340
Hsp92II	CATG	8 cut(s)	129, 227, 377, 388, 442, 461, 479, 493
HspAI	GCGC	1 cut(s)	388
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	2 cut(s)	104, 349
LmnI	GCTCC	3 cut(s)	26, 175, 454
MaeI	CTAG	1 cut(s)	335
MaeII	ACGT	2 cut(s)	96, 340
MalI	GATC	2 cut(s)	106, 351
MboI	GATC	2 cut(s)	104, 349
MboII	GAAGA	6 cut(s)	148, 214, 275, 278, 416, 454
MhlI	GDGCHC	2 cut(s)	23, 185
MluCI	AATT	2 cut(s)	213, 493
MnlI	CCTC	4 cut(s)	53, 166, 200, 308
MroXI	GAANNNNTTC	1 cut(s)	431
MseI	TTAA	2 cut(s)	93, 500
MspI	CCGG	1 cut(s)	61
Mva1269I	GAATGC	1 cut(s)	318
MwoI	GCNNNNNNNGC	1 cut(s)	480
NdeII	GATC	2 cut(s)	104, 349
NlaIII	CATG	8 cut(s)	129, 227, 377, 388, 442, 461, 479, 493
NlaIV	GGNNCC	1 cut(s)	65
NspI	RCATGY	4 cut(s)	227, 388, 442, 461
PaeR7I	CTCGAG	1 cut(s)	184
PciI	ACATGT	1 cut(s)	223
PctI	GAATGC	1 cut(s)	318
PdmI	GAANNNNTTC	1 cut(s)	431
PfeI	GAWTC	1 cut(s)	514
Pfl23II	CGTACG	1 cut(s)	108
Ple19I	CGATCG	1 cut(s)	107
PscI	ACATGT	1 cut(s)	223
Psp124BI	GAGCTC	1 cut(s)	185
Psp1406I	AACGTT	1 cut(s)	96
PspFI	CCCAGC	1 cut(s)	130
PspLI	CGTACG	1 cut(s)	108
PspN4I	GGNNCC	1 cut(s)	65
PspXI	VCTCGAGB	1 cut(s)	184
PsrI	GAACNNNNNNTAC	2 cut(s)	419, 451
PvuI	CGATCG	1 cut(s)	107
RsaI	GTAC	2 cut(s)	27, 110
RsaNI	GTAC	2 cut(s)	26, 109
SacI	GAGCTC	1 cut(s)	185
SaqAI	TTAA	2 cut(s)	93, 500
Sau3AI	GATC	2 cut(s)	104, 349
SduI	GDGCHC	2 cut(s)	23, 185
SetI	ASST	3 cut(s)	99, 185, 343
Sfr274I	CTCGAG	1 cut(s)	184
SlaI	CTCGAG	1 cut(s)	184
SmlI	CTYRAG	1 cut(s)	184
SmoI	CTYRAG	1 cut(s)	184
Sse9I	AATT	2 cut(s)	213, 493
SsiI	CCGC	1 cut(s)	79
SspMI	CTAG	1 cut(s)	335
SstI	GAGCTC	1 cut(s)	185
TaiI	ACGT	2 cut(s)	99, 343
TaqI	TCGA	2 cut(s)	185, 219
TasI	AATT	2 cut(s)	213, 493
TfiI	GAWTC	1 cut(s)	514
Tru1I	TTAA	2 cut(s)	93, 500
Tru9I	TTAA	2 cut(s)	93, 500
TscAI	CASTG	1 cut(s)	23
TspDTI	ATGAA	2 cut(s)	276, 506
TspGWI	ACGGA	3 cut(s)	13, 126, 185
TspRI	CASTG	1 cut(s)	23
XceI	RCATGY	4 cut(s)	227, 388, 442, 461
XhoI	CTCGAG	1 cut(s)	184
XmiI	GTMKAC	2 cut(s)	368, 381
XmnI	GAANNNNTTC	1 cut(s)	431
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.