AT2G34040

Contains the following InterPro domains Apoptosis inhibitory 5 (InterPro IPR008383)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0004487
Physical Location & Seq
Reverse (-)
14377722 .. 14382673
4952 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G34040.3

Sequence Viewer

Length: 1662 bp
ATGTCAGAGAACCAGTCCGAAGAAGTCCAGCAAATCGAGAAGCTCTATGAGTTCAGTGAGCGTCTCAATGCCTCCAAGGACAAGTCTCAGAATGTTGAGGATTATGAGGGGATCATTAAGATGTCCAAGACTAGTATGAAGGCAAAGCAGCTTGCGTCGCAGCTAATTCCTCGCTACTTCAAGTTCTTCCCTAGTCTCTCTACTGAGGCTTTCGATGCGCATATGGACTGTATCGATGATGGAGATCTTGGGGTACGTGTTCAAGCCATCCGTGGGCTCCCGCTGTTTTGTAAGGATACGCCAGATATTTTATCTAAGATTGTTGATGTTCTTGTTCAACTCTTGAATACAGAGGAACCTGTGGAGCGTGATGCTGTGCATAAGGCTCTGATGTCATTGTTACGACAAGATCCAAAAGCATCATCGACTGCCTTATTTACCCATGCTGGGGTTACTCCAACTACTGATGATCAAATTCGTGAAAAGGTCTTGAATTTCATCAGAGATAAGGTGATTCCTCTTAAAGGGGAACTCTTAAAGCCTCAAGAGGAGATGGAAAGACATATAACAGATTTGATCAAACAGAGCCTAGAAGATGTAACTGGAGGAGAGTTTAAAATGTTTATGGATTTCCTGACAAGTTTGAGTATATTTGGAGGCAAAGCTCCTCCAGAAAGAATGCAAGAACTTGTGGAAATTATTGAAGGACAGGCGGATTTAAATGCACAATTTGAATTTTCAGATACGGACCATATTGACAGGTTGATATCATGCCTGCAACTGGCTCTTCCCTTTTTTGCGAGAGGTGCTCCAAGCAGCAGGTTTCTTATCTATTTGAACAAACATATCATACCTGTTTTTGACAAGCTCCCAGAAGAGAGGAAACTTGATTTGCTCAAAGCACTTGCTGATATTTCTCCATACACAACTGCTCAGGAAGCAAGGCAGCTGCTTCCTTCAATCGTTGAGCTTTTAAAGATATACATGCCTGCTAGAAAGACTGGAGAGGAAATGAACTTCACATACGTCGAGTGTTTGTTGTATGCGTTTCATCACCTTGCCCACAAGGTTCCAAATGCTACAAACAGCTTGTGTGGGTACAAGATTGTGACCGGCCAGCCATCAGACAGATTGGGGGAGGACTTCTCAGAGTTGAACAAAGACTTTACTGAGAGATTAACCATTGTTGAGGATCTAACTAAGGCAACGATGAAGAAATTAACTCAGGGAATGACTGAGCACAACAAAGCCATGTCGGCTGCTAAGACAGATGAAGAGAAAGCGAGTATTAAAACAAAGAGGCAGAATACTACAACTGGACTTAGGACCTGTAATAACATATTGGCGATGACAAAGCCATTGCATGCAAAAGTGCCACCTTTTATCGGAGACACTAATCTCAACCTGTCTTGGAAAGAAGCCACAAAGCCGTTAGCCTCAACAACAACAACAATTGGAGGAAAGCGGCCTGCTAATAGCAACAATGGAAGTGGTAACAATGTTGCAGCAAAGAAGGGACGTGGGTCGGGTACTATGCAAAACCAGCTTGTGAACAAGGCCTTTGAGGGGATATCATCCTATGGAGCTGGTAGAGGCGGAAACCGAGGTTGGGGAAGACGTGGAGGTGGTCGAGGAAGAGGACAAGGAAGAGGTCACTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
API5

Protein Analysis

553

Amino Acids

61.64

Weight (kDa)

8.05

Isoelectric Point (pI)

42.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
API5 PF05918 12 - 549 3.2e-245 Apoptosis inhibitory protein 5 (API5)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 219
Acc36I ACCTGC 1 cut(s) 810
AciI CCGC 4 cut(s) 281, 713, 1465, 1596
AclWI GGATC 3 cut(s) 119, 404, 1200
AcoI YGGCCR 1 cut(s) 1114
AcsI RAATTY 3 cut(s) 474, 493, 734
AfaI GTAC 3 cut(s) 255, 1100, 1531
AfiI CCNNNNNNNGG 8 cut(s) 273, 447, 448, 524, 781, 1385, 1566, 1609
AflIII ACRYGT 1 cut(s) 256
AhlI ACTAGT 1 cut(s) 131
AjiI CACGTC 2 cut(s) 1520, 1619
AjuI GAANNNNNNNTTGG 2 cut(s) 1591, 1623
Alw21I GWGCWC 2 cut(s) 811, 1242
Alw26I GTCTC 4 cut(s) 68, 90, 200, 1383
AlwI GGATC 3 cut(s) 119, 404, 1200
AoxI GGCC 3 cut(s) 1114, 1466, 1557
ApeKI GCWGC 7 cut(s) 148, 160, 816, 946, 949, 1259, 1505
ApoI RAATTY 3 cut(s) 474, 493, 734
AspLEI GCGC 1 cut(s) 220
AspS9I GGNCC 2 cut(s) 748, 1326
AsuHPI GGTGA 2 cut(s) 523, 1046
AvaII GGWCC 2 cut(s) 748, 1326
BanII GRGCYC 1 cut(s) 279
BbsI GAAGAC 1 cut(s) 1621
Bbv12I GWGCWC 2 cut(s) 811, 1242
BbvI GCAGC 7 cut(s) 160, 172, 828, 936, 958, 1246, 1517
BccI CCATC 4 cut(s) 233, 275, 547, 1129
BceAI ACGGC 1 cut(s) 1414
BciVI GTATCC 1 cut(s) 289
BclI TGATCA 2 cut(s) 469, 576
BcoDI GTCTC 4 cut(s) 68, 90, 200, 1383
BcuI ACTAGT 1 cut(s) 131
BfaI CTAG 4 cut(s) 132, 192, 590, 993
BfuAI ACCTGC 1 cut(s) 810
BfuI GTATCC 1 cut(s) 289
BglI GCCNNNNNGGC 1 cut(s) 1256
BglII AGATCT 1 cut(s) 244
BisI GCNGC 8 cut(s) 149, 161, 817, 947, 950, 1260, 1466, 1506
BlsI GCNGC 8 cut(s) 150, 162, 818, 948, 951, 1261, 1467, 1507
Bme18I GGWCC 2 cut(s) 748, 1326
BmgBI CACGTC 2 cut(s) 1520, 1619
BmgT120I GGNCC 2 cut(s) 748, 1326
BmiI GGNNCC 3 cut(s) 278, 357, 1071
BmsI GCATC 3 cut(s) 205, 361, 428
BoxI GACNNNNGTC 1 cut(s) 1522
BpiI GAAGAC 1 cut(s) 1621
BplI GAGNNNNNCTC 4 cut(s) 793, 825, 1130, 1162
BpmI CTGGAG 3 cut(s) 624, 654, 1023
Bpu10I CCTNAGC 1 cut(s) 933
BpuEI CTTGAG 1 cut(s) 528
Bsa29I ATCGAT 1 cut(s) 234
BsaAI YACGTR 1 cut(s) 257
BsaBI GATNNNNATC 1 cut(s) 243
BsaJI CCNNGG 3 cut(s) 75, 271, 1603
Bsc4I CCNNNNNNNGG 8 cut(s) 273, 447, 448, 524, 781, 1385, 1566, 1609
Bse118I RCCGGY 1 cut(s) 1112
Bse1I ACTGG 6 cut(s) 13, 607, 786, 1006, 1321, 1661
Bse3DI GCAATG 1 cut(s) 1358
Bse8I GATNNNNATC 1 cut(s) 243
BseCI ATCGAT 1 cut(s) 234
BseDI CCNNGG 3 cut(s) 75, 271, 1603
BseGI GGATG 2 cut(s) 267, 1574
BseJI GATNNNNATC 1 cut(s) 243
BseLI CCNNNNNNNGG 8 cut(s) 273, 447, 448, 524, 781, 1385, 1566, 1609
BseMI GCAATG 1 cut(s) 1358
BseMII CTCAG 7 cut(s) 101, 195, 947, 1161, 1161, 1227, 1238
BseNI ACTGG 6 cut(s) 13, 607, 786, 1006, 1321, 1661
BseRI GAGGAG 3 cut(s) 563, 621, 657
BseXI GCAGC 7 cut(s) 160, 172, 828, 936, 958, 1246, 1517
BseYI CCCAGC 1 cut(s) 446
BshFI GGCC 3 cut(s) 1116, 1468, 1559
BshVI ATCGAT 1 cut(s) 234
BsiHKAI GWGCWC 2 cut(s) 811, 1242
BsiSI CCGG 1 cut(s) 1113
BslFI GGGAC 1 cut(s) 1530
BslI CCNNNNNNNGG 8 cut(s) 273, 447, 448, 524, 781, 1385, 1566, 1609
BsmAI GTCTC 4 cut(s) 68, 90, 200, 1383
BsmBI CGTCTC 1 cut(s) 68
BsmFI GGGAC 1 cut(s) 1530
BsmI GAATGC 1 cut(s) 684
BsnI GGCC 3 cut(s) 1116, 1468, 1559
Bsp1286I GDGCHC 3 cut(s) 279, 811, 1242
Bsp143I GATC 6 cut(s) 111, 244, 409, 469, 576, 1192
BspACI CCGC 4 cut(s) 281, 713, 1465, 1596
BspANI GGCC 3 cut(s) 1116, 1468, 1559
BspCNI CTCAG 7 cut(s) 100, 196, 946, 1160, 1162, 1228, 1237
BspDI ATCGAT 1 cut(s) 234
BspLI GGNNCC 3 cut(s) 278, 357, 1071
BspMI ACCTGC 1 cut(s) 810
BspPI GGATC 3 cut(s) 119, 404, 1200
BspQI GCTCTTC 1 cut(s) 792
BsrDI GCAATG 1 cut(s) 1358
BsrFI RCCGGY 1 cut(s) 1112
BsrI ACTGG 6 cut(s) 13, 607, 786, 1006, 1321, 1661
BssAI RCCGGY 1 cut(s) 1112
BssECI CCNNGG 3 cut(s) 75, 271, 1603
BssMI GATC 6 cut(s) 111, 244, 409, 469, 576, 1192
BssT1I CCWWGG 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 230
Bst6I CTCTTC 5 cut(s) 792, 870, 1269, 1630, 1642
BstBAI YACGTR 1 cut(s) 257
BstC8I GCNNGC 6 cut(s) 153, 776, 990, 1118, 1365, 1470
BstDSI CCRYGG 1 cut(s) 271
BstENI CCTNNNNNAGG 1 cut(s) 522
BstF5I GGATG 2 cut(s) 267, 1574
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 6 cut(s) 114, 247, 412, 472, 579, 1195
BstMAI GTCTC 4 cut(s) 68, 90, 200, 1383
BstMBI GATC 6 cut(s) 111, 244, 409, 469, 576, 1192
BstMWI GCNNNNNNNGC 6 cut(s) 157, 215, 806, 938, 1256, 1543
BstNSI RCATGY 2 cut(s) 988, 1367
BstPAI GACNNNNGTC 1 cut(s) 1522
BstV1I GCAGC 7 cut(s) 160, 172, 828, 936, 958, 1246, 1517
BstV2I GAAGAC 1 cut(s) 1621
BstX2I RGATCY 3 cut(s) 244, 409, 1192
BstYI RGATCY 3 cut(s) 244, 409, 1192
Bsu15I ATCGAT 1 cut(s) 234
BsuI GTATCC 1 cut(s) 289
BsuRI GGCC 3 cut(s) 1116, 1468, 1559
BsuTUI ATCGAT 1 cut(s) 234
BtgI CCRYGG 1 cut(s) 271
BtgZI GCGATG 1 cut(s) 1361
BtrI CACGTC 2 cut(s) 1520, 1619
BtsCI GGATG 2 cut(s) 267, 1574
BtsIMutI CAGTG 2 cut(s) 61, 1654
BveI ACCTGC 1 cut(s) 810
Cac8I GCNNGC 6 cut(s) 153, 776, 990, 1118, 1365, 1470
CfoI GCGC 1 cut(s) 220
Cfr10I RCCGGY 1 cut(s) 1112
Cfr13I GGNCC 2 cut(s) 748, 1326
ClaI ATCGAT 1 cut(s) 234
CseI GACGC 2 cut(s) 50, 144
Csp6I GTAC 3 cut(s) 254, 1099, 1530
CspCI CAANNNNNGTGG 2 cut(s) 1471, 1506
CviAII CATG 5 cut(s) 443, 771, 985, 1252, 1364
CviQI GTAC 3 cut(s) 254, 1099, 1530
DpnI GATC 6 cut(s) 113, 246, 411, 471, 578, 1194
DpnII GATC 6 cut(s) 111, 244, 409, 469, 576, 1192
DraI TTTAAA 3 cut(s) 616, 720, 975
EaeI YGGCCR 1 cut(s) 1114
Eam1104I CTCTTC 5 cut(s) 792, 870, 1269, 1630, 1642
EarI CTCTTC 5 cut(s) 792, 870, 1269, 1630, 1642
EciI GGCGGA 2 cut(s) 728, 1611
Eco130I CCWWGG 1 cut(s) 75
Eco147I AGGCCT 1 cut(s) 1559
Eco24I GRGCYC 1 cut(s) 279
Eco32I GATATC 2 cut(s) 768, 1572
Eco47I GGWCC 2 cut(s) 748, 1326
EcoNI CCTNNNNNAGG 1 cut(s) 522
EcoO109I RGGNCCY 1 cut(s) 1326
EcoRV GATATC 2 cut(s) 768, 1572
EcoT14I CCWWGG 1 cut(s) 75
EcoT38I GRGCYC 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 75
Esp3I CGTCTC 1 cut(s) 68
FaeI CATG 5 cut(s) 446, 774, 988, 1255, 1367
FaqI GGGAC 1 cut(s) 1530
FatI CATG 5 cut(s) 442, 770, 984, 1251, 1363
FauI CCCGC 1 cut(s) 288
FauNDI CATATG 1 cut(s) 222
FbaI TGATCA 2 cut(s) 469, 576
Fnu4HI GCNGC 8 cut(s) 149, 161, 817, 947, 950, 1260, 1466, 1506
FokI GGATG 2 cut(s) 254, 1561
FriOI GRGCYC 1 cut(s) 279
Fsp4HI GCNGC 8 cut(s) 149, 161, 817, 947, 950, 1260, 1466, 1506
FspAI RTGCGCAY 1 cut(s) 219
FspBI CTAG 4 cut(s) 132, 192, 590, 993
FspI TGCGCA 1 cut(s) 219
GlaI GCGC 1 cut(s) 219
GluI GCNGC 8 cut(s) 149, 161, 817, 947, 950, 1260, 1466, 1506
GsaI CCCAGC 1 cut(s) 450
GsuI CTGGAG 3 cut(s) 624, 654, 1023
HaeIII GGCC 3 cut(s) 1116, 1468, 1559
HapII CCGG 1 cut(s) 1113
HgaI GACGC 2 cut(s) 50, 144
HhaI GCGC 1 cut(s) 220
Hin1II CATG 5 cut(s) 446, 774, 988, 1255, 1367
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HinfI GANTC 1 cut(s) 514
HpaII CCGG 1 cut(s) 1113
HphI GGTGA 2 cut(s) 523, 1046
Hpy166II GTNNAC 1 cut(s) 1552
Hpy188I TCNGA 9 cut(s) 7, 19, 90, 390, 503, 742, 1126, 1150, 1388
Hpy188III TCNNGA 8 cut(s) 37, 343, 479, 490, 545, 634, 671, 935
Hpy8I GTNNAC 1 cut(s) 1552
Hpy99I CGWCG 2 cut(s) 160, 1031
HpyAV CCTTC 4 cut(s) 133, 698, 966, 1507
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4IV ACGT 4 cut(s) 256, 1026, 1519, 1618
HpyCH4V TGCA 8 cut(s) 379, 682, 725, 778, 1363, 1367, 1505, 1537
HpyF10VI GCNNNNNNNGC 6 cut(s) 157, 215, 806, 938, 1256, 1543
HpySE526I ACGT 4 cut(s) 256, 1026, 1519, 1618
Hsp92II CATG 5 cut(s) 446, 774, 988, 1255, 1367
HspAI GCGC 1 cut(s) 218
Ksp22I TGATCA 2 cut(s) 469, 576
Kzo9I GATC 6 cut(s) 111, 244, 409, 469, 576, 1192
LguI GCTCTTC 1 cut(s) 792
LmnI GCTCC 6 cut(s) 282, 364, 670, 814, 873, 1583
Lsp1109I GCAGC 7 cut(s) 160, 172, 828, 936, 958, 1246, 1517
LweI GCATC 3 cut(s) 205, 361, 428
MaeI CTAG 4 cut(s) 132, 192, 590, 993
MaeII ACGT 4 cut(s) 256, 1026, 1519, 1618
MaeIII GTNAC 6 cut(s) 399, 451, 598, 1108, 1493, 1652
MalI GATC 6 cut(s) 113, 246, 411, 471, 578, 1194
MboI GATC 6 cut(s) 111, 244, 409, 469, 576, 1192
MfeI CAATTG 1 cut(s) 1452
MflI RGATCY 3 cut(s) 244, 409, 1192
MhlI GDGCHC 3 cut(s) 279, 811, 1242
MluCI AATT 8 cut(s) 165, 474, 493, 696, 728, 734, 1217, 1452
MmeI TCCRAC 1 cut(s) 482
MseI TTAA 9 cut(s) 117, 522, 536, 615, 719, 974, 1178, 1220, 1290
MslI CAYNNNNRTG 1 cut(s) 119
MspA1I CMGCKG 2 cut(s) 283, 949
MspI CCGG 1 cut(s) 1113
MunI CAATTG 1 cut(s) 1452
Mva1269I GAATGC 1 cut(s) 684
MwoI GCNNNNNNNGC 6 cut(s) 157, 215, 806, 938, 1256, 1543
NdeI CATATG 1 cut(s) 222
NdeII GATC 6 cut(s) 111, 244, 409, 469, 576, 1192
NlaIII CATG 5 cut(s) 446, 774, 988, 1255, 1367
NlaIV GGNNCC 3 cut(s) 278, 357, 1071
NmuCI GTSAC 2 cut(s) 1108, 1652
NsbI TGCGCA 1 cut(s) 219
NspI RCATGY 2 cut(s) 988, 1367
PaeI GCATGC 1 cut(s) 1367
PceI AGGCCT 1 cut(s) 1559
PciSI GCTCTTC 1 cut(s) 792
PctI GAATGC 1 cut(s) 684
PfeI GAWTC 1 cut(s) 514
PkrI GCNGC 8 cut(s) 150, 162, 818, 948, 951, 1261, 1467, 1507
Ppu21I YACGTR 1 cut(s) 257
PpuMI RGGWCCY 1 cut(s) 1326
PshAI GACNNNNGTC 1 cut(s) 1522
Psp5II RGGWCCY 1 cut(s) 1326
PspFI CCCAGC 1 cut(s) 446
PspN4I GGNNCC 3 cut(s) 278, 357, 1071
PspPI GGNCC 2 cut(s) 748, 1326
PspPPI RGGWCCY 1 cut(s) 1326
PsrI GAACNNNNNNTAC 2 cut(s) 1007, 1039
PsuI RGATCY 3 cut(s) 244, 409, 1192
PvuII CAGCTG 1 cut(s) 949
RsaI GTAC 3 cut(s) 255, 1100, 1531
RsaNI GTAC 3 cut(s) 254, 1099, 1530
RseI CAYNNNNRTG 1 cut(s) 119
SapI GCTCTTC 1 cut(s) 792
SaqAI TTAA 9 cut(s) 117, 522, 536, 615, 719, 974, 1178, 1220, 1290
SatI GCNGC 8 cut(s) 149, 161, 817, 947, 950, 1260, 1466, 1506
Sau3AI GATC 6 cut(s) 111, 244, 409, 469, 576, 1192
Sau96I GGNCC 2 cut(s) 748, 1326
SduI GDGCHC 3 cut(s) 279, 811, 1242
SfaNI GCATC 3 cut(s) 205, 361, 428
SinI GGWCC 2 cut(s) 748, 1326
SmiI ATTTAAAT 1 cut(s) 720
SmiMI CAYNNNNRTG 1 cut(s) 119
SmlI CTYRAG 1 cut(s) 543
SmoI CTYRAG 1 cut(s) 543
SpeI ACTAGT 1 cut(s) 131
SphI GCATGC 1 cut(s) 1367
Sse9I AATT 8 cut(s) 165, 474, 493, 696, 728, 734, 1217, 1452
SseBI AGGCCT 1 cut(s) 1559
SsiI CCGC 4 cut(s) 281, 713, 1465, 1596
SspMI CTAG 4 cut(s) 132, 192, 590, 993
StuI AGGCCT 1 cut(s) 1559
StyI CCWWGG 1 cut(s) 75
SwaI ATTTAAAT 1 cut(s) 720
TaaI ACNGT 1 cut(s) 230
TaiI ACGT 4 cut(s) 259, 1029, 1522, 1621
TaqI TCGA 6 cut(s) 36, 213, 234, 425, 1029, 1630
TasI AATT 8 cut(s) 165, 474, 493, 696, 728, 734, 1217, 1452
TauI GCSGC 1 cut(s) 1468
TfiI GAWTC 1 cut(s) 514
Tru1I TTAA 9 cut(s) 117, 522, 536, 615, 719, 974, 1178, 1220, 1290
Tru9I TTAA 9 cut(s) 117, 522, 536, 615, 719, 974, 1178, 1220, 1290
TscAI CASTG 2 cut(s) 61, 1661
TseFI GTSAC 2 cut(s) 1108, 1652
TseI GCWGC 7 cut(s) 148, 160, 816, 946, 949, 1259, 1505
Tsp45I GTSAC 2 cut(s) 1108, 1652
TspDTI ATGAA 6 cut(s) 152, 487, 1028, 1040, 1226, 1287
TspGWI ACGGA 2 cut(s) 260, 761
TspRI CASTG 2 cut(s) 61, 1661
VpaK11BI GGWCC 2 cut(s) 748, 1326
XagI CCTNNNNNAGG 1 cut(s) 522
XapI RAATTY 3 cut(s) 474, 493, 734
XceI RCATGY 2 cut(s) 988, 1367
XspI CTAG 4 cut(s) 132, 192, 590, 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.