Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001300.1

Orthogroup ID

OG0004487

Physical Location & Seq

Genomic Coordinates Reverse (-)

34799 .. 39481

Gene Structure 4683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001300.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

atggttcgagtgcaagctatttgggggctttccccttttccgaagattgtagacattcttgtgcaactcctgcaagctgatgagtttgtggagcgtgatgctgtgcataaggctcttatggcccttttgaggcaggatgtgaaagaacatgcagcttctttgagagccttgttcaagcacattggaagcgttgatgaaccaagccaagacgatgttattcttgagaaattcctaagctttatcagagataaggtatttcctactaaagctgaacttttgaagcctcaggaggaaaaggagaggcatattactgacttgataaaaaagagtttagaagatgtaactggagcagaattaagaatgtttatggaccttttaaaaggtttgagcatctttggggataaagctctgaaagaacggagggtagaacttgttggaattattaaaggacaggctgatttagatgctcaattcaatgtttcagatgcagaccatatcgacaggttgatatcttgcctatttatggctctgccatttattgtgagaggtgcaccaagcagcaaattcctcaactatctgaacaaacacatccttcctgtttcggataaggtatcatctacacccaacttcctggtataccctttgagcattcatgtcaaaagtggcaccattcaccacaccacaagattcacgtcagattctaccttctgtggttcagctgttaaagaaaaacatgcctcggagaaagacggagaggagttcaacttcacttatgtcaaatgcttgttgtacacatttcaccatcttgctcacaaggttccaaatgctaccaacagtttatgcggctacaagatagtaactggacaaccatcaaatatgcttggtgaggactttacagagcagtatatatgttcatgttattgtcatttcaaagaagcgtctgcgaagattgaagtccctaggaaacatgttgctgtttcaattcctagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009555 GO:0010941 GO:0032501 GO:0032502 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

API5

Protein Analysis

330

Amino Acids

37.18

Weight (kDa)

6.95

Isoelectric Point (pI)

37.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34040 AT2G34040 AT2G34040
fragaria_vesca	FvH4_3g08240 FvH4_3g08240 FvH4_3g08240
malus_domestica	MD05G1306200.v1.1 MD10G1285200.v1.1
prunus_persica	Prupe.4G056400_v2.0.a1 Prupe.4G056400_v2.0.a1 Prupe.4G056400_v2.0.a1
pyrus_communis	pycom05g28330 pycom10g23830
rosa_chinensis	RchiOBHm_Chr5g0009911 RchiOBHm_Chr7g0217661
rosa_laevigata	RLG00000002451 RLG00000031709
rosa_multiflora	Rmu_sc0001300.1_g000008 Rmu_sc0001709.1_g000015
rosa_roxburghii	Rroxscaffold_1G00066270
rosa_rugosa	Rorug04G0446700 Rorug04G0446800 Rorug07G0170700
rosa_samantha	Rh5AG078400 Rh5BG073300 Rh5CG085700 Rh5DG073800 Rh7AG310900 Rh7BG302600 Rh7CG329800
rosa_wichuraiana	Rw5G007210 Rw7G026380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	665
AccI	GTMKAC	2 cut(s)	51, 636
AciI	CCGC	1 cut(s)	843
AcsI	RAATTY	2 cut(s)	227, 563
AfaI	GTAC	1 cut(s)	791
AfiI	CCNNNNNNNGG	2 cut(s)	129, 523
AflIII	ACRYGT	1 cut(s)	967
AgsI	TTSAA	7 cut(s)	175, 280, 475, 763, 931, 953, 981
AjiI	CACGTC	1 cut(s)	693
AjnI	CCWGG	1 cut(s)	630
AluBI	AGCT	7 cut(s)	17, 77, 155, 237, 269, 407, 719
AluI	AGCT	7 cut(s)	17, 77, 155, 237, 269, 407, 719
Alw21I	GWGCWC	1 cut(s)	553
Alw44I	GTGCAC	1 cut(s)	549
AoxI	GGCC	1 cut(s)	120
ApaLI	GTGCAC	1 cut(s)	549
ApeKI	GCWGC	2 cut(s)	152, 558
ApoI	RAATTY	2 cut(s)	227, 563
AspA2I	CCTAGG	1 cut(s)	959
AspS9I	GGNCC	2 cut(s)	121, 370
AsuHPI	GGTGA	3 cut(s)	665, 791, 896
AvaII	GGWCC	1 cut(s)	370
AvrII	CCTAGG	1 cut(s)	959
AxyI	CCTNAGG	1 cut(s)	285
BaeGI	GKGCMC	1 cut(s)	553
BanI	GGYRCC	1 cut(s)	665
Bbv12I	GWGCWC	1 cut(s)	553
BbvI	GCAGC	2 cut(s)	164, 570
BccI	CCATC	2 cut(s)	810, 877
BciT130I	CCWGG	1 cut(s)	632
BfaI	CTAG	2 cut(s)	960, 987
BisI	GCNGC	3 cut(s)	153, 559, 844
BlnI	CCTAGG	1 cut(s)	959
BlsI	GCNGC	3 cut(s)	154, 560, 845
Bme1390I	CCNGG	1 cut(s)	632
Bme18I	GGWCC	1 cut(s)	370
BmgBI	CACGTC	1 cut(s)	693
BmgT120I	GGNCC	2 cut(s)	121, 370
BmiI	GGNNCC	2 cut(s)	667, 819
BmrFI	CCNGG	1 cut(s)	632
BmsI	GCATC	4 cut(s)	88, 399, 454, 475
BpmI	CTGGAG	1 cut(s)	366
Bpu10I	CCTNAGC	1 cut(s)	233
BpuEI	CTTGAG	1 cut(s)	242
BsaJI	CCNNGG	2 cut(s)	738, 959
Bsc4I	CCNNNNNNNGG	2 cut(s)	129, 523
Bse1I	ACTGG	2 cut(s)	349, 865
Bse21I	CCTNAGG	1 cut(s)	285
BseBI	CCWGG	1 cut(s)	632
BseDI	CCNNGG	2 cut(s)	738, 959
BseGI	GGATG	2 cut(s)	142, 588
BseLI	CCNNNNNNNGG	2 cut(s)	129, 523
BseMII	CTCAG	1 cut(s)	299
BseNI	ACTGG	2 cut(s)	349, 865
BseRI	GAGGAG	1 cut(s)	770
BseSI	GKGCMC	1 cut(s)	553
BseXI	GCAGC	2 cut(s)	164, 570
BshFI	GGCC	1 cut(s)	122
BshNI	GGYRCC	1 cut(s)	665
BsiHKAI	GWGCWC	1 cut(s)	553
BslFI	GGGAC	1 cut(s)	941
BslI	CCNNNNNNNGG	2 cut(s)	129, 523
BsmFI	GGGAC	1 cut(s)	941
BsmI	GAATGC	1 cut(s)	648
BsnI	GGCC	1 cut(s)	122
Bsp1286I	GDGCHC	1 cut(s)	553
Bsp1407I	TGTACA	1 cut(s)	789
BspACI	CCGC	1 cut(s)	843
BspANI	GGCC	1 cut(s)	122
BspCNI	CTCAG	1 cut(s)	298
BspLI	GGNNCC	2 cut(s)	667, 819
BspT107I	GGYRCC	1 cut(s)	665
BsrGI	TGTACA	1 cut(s)	789
BsrI	ACTGG	2 cut(s)	349, 865
BssECI	CCNNGG	2 cut(s)	738, 959
BssNAI	GTATAC	1 cut(s)	637
BssT1I	CCWWGG	1 cut(s)	959
Bst1107I	GTATAC	1 cut(s)	637
Bst2UI	CCWGG	1 cut(s)	632
Bst4CI	ACNGT	1 cut(s)	836
BstAPI	GCANNNNNTGC	1 cut(s)	70
BstAUI	TGTACA	1 cut(s)	789
BstC8I	GCNNGC	2 cut(s)	15, 75
BstDEI	CTNAG	2 cut(s)	233, 285
BstF5I	GGATG	2 cut(s)	142, 588
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 119
BstNI	CCWGG	1 cut(s)	632
BstNSI	RCATGY	3 cut(s)	152, 737, 971
BstSCI	CCNGG	1 cut(s)	630
BstSLI	GKGCMC	1 cut(s)	553
BstV1I	GCAGC	2 cut(s)	164, 570
BstXI	CCANNNNNNTGG	1 cut(s)	631
BstZ17I	GTATAC	1 cut(s)	637
Bsu36I	CCTNAGG	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	122
BtrI	CACGTC	1 cut(s)	693
BtsCI	GGATG	2 cut(s)	142, 588
Cac8I	GCNNGC	2 cut(s)	15, 75
Cfr13I	GGNCC	2 cut(s)	121, 370
CseI	GACGC	1 cut(s)	927
Csp6I	GTAC	1 cut(s)	790
CviAII	CATG	5 cut(s)	149, 653, 734, 915, 968
CviQI	GTAC	1 cut(s)	790
DdeI	CTNAG	2 cut(s)	233, 285
DraI	TTTAAA	1 cut(s)	378
Eco130I	CCWWGG	1 cut(s)	959
Eco32I	GATATC	1 cut(s)	510
Eco47I	GGWCC	1 cut(s)	370
Eco81I	CCTNAGG	1 cut(s)	285
EcoRII	CCWGG	1 cut(s)	630
EcoRV	GATATC	1 cut(s)	510
EcoT14I	CCWWGG	1 cut(s)	959
ErhI	CCWWGG	1 cut(s)	959
FaeI	CATG	5 cut(s)	152, 656, 737, 918, 971
FalI	AAGNNNNNCTT	2 cut(s)	258, 290
FaqI	GGGAC	1 cut(s)	941
FatI	CATG	5 cut(s)	148, 652, 733, 914, 967
FblI	GTMKAC	2 cut(s)	51, 636
Fnu4HI	GCNGC	3 cut(s)	153, 559, 844
FokI	GGATG	2 cut(s)	149, 575
Fsp4HI	GCNGC	3 cut(s)	153, 559, 844
FspBI	CTAG	2 cut(s)	960, 987
GluI	GCNGC	3 cut(s)	153, 559, 844
GsuI	CTGGAG	1 cut(s)	366
HaeIII	GGCC	1 cut(s)	122
HgaI	GACGC	1 cut(s)	927
Hin1II	CATG	5 cut(s)	152, 656, 737, 918, 971
HindIII	AAGCTT	1 cut(s)	235
HinfI	GANTC	2 cut(s)	687, 698
HphI	GGTGA	3 cut(s)	665, 791, 896
Hpy166II	GTNNAC	4 cut(s)	52, 551, 637, 792
Hpy188I	TCNGA	8 cut(s)	42, 245, 411, 484, 579, 604, 697, 742
Hpy188III	TCNNGA	2 cut(s)	221, 287
Hpy8I	GTNNAC	4 cut(s)	52, 551, 637, 792
HpyAV	CCTTC	2 cut(s)	602, 715
HpyCH4III	ACNGT	1 cut(s)	836
HpyCH4IV	ACGT	1 cut(s)	692
HpyCH4V	TGCA	7 cut(s)	13, 64, 73, 106, 152, 488, 551
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 119
HpyF3I	CTNAG	2 cut(s)	233, 285
HpySE526I	ACGT	1 cut(s)	692
Hsp92II	CATG	5 cut(s)	152, 656, 737, 918, 971
LmnI	GCTCC	2 cut(s)	91, 347
Lsp1109I	GCAGC	2 cut(s)	164, 570
LweI	GCATC	4 cut(s)	88, 399, 454, 475
MaeI	CTAG	2 cut(s)	960, 987
MaeII	ACGT	1 cut(s)	692
MaeIII	GTNAC	2 cut(s)	340, 856
MboII	GAAGA	3 cut(s)	55, 347, 958
MhlI	GDGCHC	1 cut(s)	553
MluCI	AATT	6 cut(s)	227, 353, 438, 470, 563, 981
MmeI	TCCRAC	1 cut(s)	415
MseI	TTAA	5 cut(s)	356, 377, 444, 723, 991
MslI	CAYNNNNRTG	1 cut(s)	59
MspA1I	CMGCKG	1 cut(s)	719
MspR9I	CCNGG	1 cut(s)	632
Mva1269I	GAATGC	1 cut(s)	648
MvaI	CCWGG	1 cut(s)	632
MwoI	GCNNNNNNNGC	2 cut(s)	70, 119
NlaIII	CATG	5 cut(s)	152, 656, 737, 918, 971
NlaIV	GGNNCC	2 cut(s)	667, 819
NspI	RCATGY	3 cut(s)	152, 737, 971
PciI	ACATGT	1 cut(s)	967
PctI	GAATGC	1 cut(s)	648
PfeI	GAWTC	2 cut(s)	687, 698
PkrI	GCNGC	3 cut(s)	154, 560, 845
PscI	ACATGT	1 cut(s)	967
Psp6I	CCWGG	1 cut(s)	630
PspGI	CCWGG	1 cut(s)	630
PspN4I	GGNNCC	2 cut(s)	667, 819
PspPI	GGNCC	2 cut(s)	121, 370
PvuII	CAGCTG	1 cut(s)	719
RsaI	GTAC	1 cut(s)	791
RsaNI	GTAC	1 cut(s)	790
RseI	CAYNNNNRTG	1 cut(s)	59
SaqAI	TTAA	5 cut(s)	356, 377, 444, 723, 991
SatI	GCNGC	3 cut(s)	153, 559, 844
Sau96I	GGNCC	2 cut(s)	121, 370
ScrFI	CCNGG	1 cut(s)	632
SduI	GDGCHC	1 cut(s)	553
SfaNI	GCATC	4 cut(s)	88, 399, 454, 475
SinI	GGWCC	1 cut(s)	370
SmiMI	CAYNNNNRTG	1 cut(s)	59
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	6 cut(s)	227, 353, 438, 470, 563, 981
SsiI	CCGC	1 cut(s)	843
SspMI	CTAG	2 cut(s)	960, 987
StyD4I	CCNGG	1 cut(s)	630
StyI	CCWWGG	1 cut(s)	959
TaaI	ACNGT	1 cut(s)	836
TaiI	ACGT	1 cut(s)	695
TaqI	TCGA	2 cut(s)	7, 498
TasI	AATT	6 cut(s)	227, 353, 438, 470, 563, 981
TatI	WGTACW	1 cut(s)	789
TauI	GCSGC	1 cut(s)	846
TfiI	GAWTC	2 cut(s)	687, 698
Tru1I	TTAA	5 cut(s)	356, 377, 444, 723, 991
Tru9I	TTAA	5 cut(s)	356, 377, 444, 723, 991
TseI	GCWGC	2 cut(s)	152, 558
TspDTI	ATGAA	3 cut(s)	210, 641, 903
TspGWI	ACGGA	2 cut(s)	433, 765
VneI	GTGCAC	1 cut(s)	549
VpaK11BI	GGWCC	1 cut(s)	370
XapI	RAATTY	2 cut(s)	227, 563
XceI	RCATGY	3 cut(s)	152, 737, 971
XmaJI	CCTAGG	1 cut(s)	959
XmiI	GTMKAC	2 cut(s)	51, 636
XspI	CTAG	2 cut(s)	960, 987

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.