Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004487

Physical Location & Seq

Genomic Coordinates Forward (+)

60249787 .. 60262126

Gene Structure 12340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0446800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGTCATATTTAAATTGCATCCCCGTGAGTCTGTGGTGTGTGCAATATATAGCACGTCTTCATGAGAAAGGTAGAACCAACTGGAACAAGGAGAGGAAGCTGATCTTGAAATACACCCACAAGTATAGGCTGGGACTCTGGAGGCCTCTAGCTCAGCCAATAAAATCCTATACTCTTTCTAGAATCGATATTAGCACTAAATCTTGGTTTCTGGCTCGTGGTGTTGATAATGCTTCAGAGAAAGATAAATGGGATAAAGATCGAAACGAAATGGACCTAGTTGCCTTTTACTTTTGCGGCTTTTGCCACATGAGAAGAGCCAGGAGGAGAGTAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009555 GO:0010941 GO:0032501 GO:0032502 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

API5

Protein Analysis

112

Amino Acids

13.56

Weight (kDa)

10.02

Isoelectric Point (pI)

40.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34040 AT2G34040 AT2G34040
fragaria_vesca	FvH4_3g08240 FvH4_3g08240 FvH4_3g08240
malus_domestica	MD05G1306200.v1.1 MD10G1285200.v1.1
prunus_persica	Prupe.4G056400_v2.0.a1 Prupe.4G056400_v2.0.a1 Prupe.4G056400_v2.0.a1
pyrus_communis	pycom05g28330 pycom10g23830
rosa_chinensis	RchiOBHm_Chr5g0009911 RchiOBHm_Chr7g0217661
rosa_laevigata	RLG00000002451 RLG00000031709
rosa_multiflora	Rmu_sc0001300.1_g000008 Rmu_sc0001709.1_g000015
rosa_roxburghii	Rroxscaffold_1G00066270
rosa_rugosa	Rorug04G0446700 Rorug04G0446800 Rorug07G0170700
rosa_samantha	Rh5AG078400 Rh5BG073300 Rh5CG085700 Rh5DG073800 Rh7AG310900 Rh7BG302600 Rh7CG329800
rosa_wichuraiana	Rw5G007210 Rw7G026380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	297
AcuI	CTGAAG	1 cut(s)	219
AgsI	TTSAA	1 cut(s)	109
AjiI	CACGTC	1 cut(s)	56
AjnI	CCWGG	1 cut(s)	320
AluBI	AGCT	2 cut(s)	100, 152
AluI	AGCT	2 cut(s)	100, 152
AoxI	GGCC	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	274
BauI	CACGAG	1 cut(s)	216
BbsI	GAAGAC	1 cut(s)	50
BciT130I	CCWGG	1 cut(s)	322
BfaI	CTAG	3 cut(s)	149, 180, 278
BisI	GCNGC	1 cut(s)	298
BlpI	GCTNAGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	299
Bme1390I	CCNGG	1 cut(s)	322
Bme18I	GGWCC	1 cut(s)	274
BmgBI	CACGTC	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	274
BmrFI	CCNGG	1 cut(s)	322
BmsI	GCATC	1 cut(s)	27
BpiI	GAAGAC	1 cut(s)	50
BpmI	CTGGAG	1 cut(s)	160
Bpu1102I	GCTNAGC	1 cut(s)	153
Bsa29I	ATCGAT	1 cut(s)	186
BsaBI	GATNNNNATC	1 cut(s)	258
Bse1I	ACTGG	1 cut(s)	86
Bse8I	GATNNNNATC	1 cut(s)	258
BseBI	CCWGG	1 cut(s)	322
BseCI	ATCGAT	1 cut(s)	186
BseGI	GGATG	1 cut(s)	18
BseJI	GATNNNNATC	1 cut(s)	258
BseMII	CTCAG	1 cut(s)	167
BseNI	ACTGG	1 cut(s)	86
BseYI	CCCAGC	1 cut(s)	130
BshFI	GGCC	1 cut(s)	145
BshVI	ATCGAT	1 cut(s)	186
BslFI	GGGAC	1 cut(s)	147
BsmFI	GGGAC	1 cut(s)	147
BsnI	GGCC	1 cut(s)	145
Bsp143I	GATC	2 cut(s)	102, 259
Bsp1720I	GCTNAGC	1 cut(s)	153
BspACI	CCGC	1 cut(s)	297
BspANI	GGCC	1 cut(s)	145
BspCNI	CTCAG	1 cut(s)	166
BspDI	ATCGAT	1 cut(s)	186
BspHI	TCATGA	1 cut(s)	61
BspQI	GCTCTTC	1 cut(s)	310
BsrI	ACTGG	1 cut(s)	86
BssMI	GATC	2 cut(s)	102, 259
BssSI	CACGAG	1 cut(s)	216
Bst2BI	CACGAG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	322
Bst6I	CTCTTC	1 cut(s)	310
BstDEI	CTNAG	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	18
BstKTI	GATC	2 cut(s)	105, 262
BstMBI	GATC	2 cut(s)	102, 259
BstMWI	GCNNNNNNNGC	1 cut(s)	303
BstNI	CCWGG	1 cut(s)	322
BstSCI	CCNGG	1 cut(s)	320
BstV2I	GAAGAC	1 cut(s)	50
Bsu15I	ATCGAT	1 cut(s)	186
BsuRI	GGCC	1 cut(s)	145
BsuTUI	ATCGAT	1 cut(s)	186
BtrI	CACGTC	1 cut(s)	56
BtsCI	GGATG	1 cut(s)	18
CciI	TCATGA	1 cut(s)	61
Cfr13I	GGNCC	1 cut(s)	274
ClaI	ATCGAT	1 cut(s)	186
CviAII	CATG	2 cut(s)	62, 310
CviJI	RGCY	8 cut(s)	100, 130, 145, 152, 157, 215, 300, 320
CviKI_1	RGCY	8 cut(s)	100, 130, 145, 152, 157, 215, 300, 320
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	2 cut(s)	104, 261
DpnII	GATC	2 cut(s)	102, 259
DraI	TTTAAA	1 cut(s)	12
Eam1104I	CTCTTC	1 cut(s)	310
EarI	CTCTTC	1 cut(s)	310
Eco147I	AGGCCT	1 cut(s)	145
Eco47I	GGWCC	1 cut(s)	274
Eco57I	CTGAAG	1 cut(s)	219
EcoRII	CCWGG	1 cut(s)	320
FaeI	CATG	2 cut(s)	65, 313
FaiI	YATR	7 cut(s)	7, 48, 50, 63, 126, 171, 311
FalI	AAGNNNNNCTT	2 cut(s)	89, 121
FaqI	GGGAC	1 cut(s)	147
FatI	CATG	2 cut(s)	61, 309
Fnu4HI	GCNGC	1 cut(s)	298
FokI	GGATG	1 cut(s)	5
Fsp4HI	GCNGC	1 cut(s)	298
FspBI	CTAG	3 cut(s)	149, 180, 278
GluI	GCNGC	1 cut(s)	298
GsaI	CCCAGC	1 cut(s)	134
GsuI	CTGGAG	1 cut(s)	160
HaeIII	GGCC	1 cut(s)	145
Hin1II	CATG	2 cut(s)	65, 313
HinfI	GANTC	3 cut(s)	28, 135, 183
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	4 cut(s)	62, 106, 139, 180
HpyCH4IV	ACGT	1 cut(s)	55
HpyCH4V	TGCA	2 cut(s)	18, 43
HpyF10VI	GCNNNNNNNGC	1 cut(s)	303
HpyF3I	CTNAG	1 cut(s)	153
HpySE526I	ACGT	1 cut(s)	55
Hsp92II	CATG	2 cut(s)	65, 313
Kzo9I	GATC	2 cut(s)	102, 259
LguI	GCTCTTC	1 cut(s)	310
LpnPI	CCDG	6 cut(s)	67, 116, 124, 197, 307, 334
LweI	GCATC	1 cut(s)	27
MaeI	CTAG	3 cut(s)	149, 180, 278
MaeII	ACGT	1 cut(s)	55
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	2 cut(s)	104, 261
MboI	GATC	2 cut(s)	102, 259
MboII	GAAGA	2 cut(s)	50, 327
MluCI	AATT	1 cut(s)	13
MlyI	GAGTC	2 cut(s)	37, 129
MnlI	CCTC	4 cut(s)	87, 135, 156, 318
MseI	TTAA	1 cut(s)	11
MslI	CAYNNNNRTG	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	322
MvaI	CCWGG	1 cut(s)	322
MwoI	GCNNNNNNNGC	1 cut(s)	303
NdeII	GATC	2 cut(s)	102, 259
NlaIII	CATG	2 cut(s)	65, 313
PagI	TCATGA	1 cut(s)	61
PceI	AGGCCT	1 cut(s)	145
PciSI	GCTCTTC	1 cut(s)	310
PfeI	GAWTC	1 cut(s)	183
PkrI	GCNGC	1 cut(s)	299
PleI	GAGTC	2 cut(s)	36, 129
PpsI	GAGTC	2 cut(s)	36, 129
Psp6I	CCWGG	1 cut(s)	320
PspFI	CCCAGC	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	320
PspPI	GGNCC	1 cut(s)	274
RseI	CAYNNNNRTG	1 cut(s)	23
SapI	GCTCTTC	1 cut(s)	310
SaqAI	TTAA	1 cut(s)	11
SatI	GCNGC	1 cut(s)	298
Sau3AI	GATC	2 cut(s)	102, 259
Sau96I	GGNCC	1 cut(s)	274
SchI	GAGTC	2 cut(s)	37, 129
ScrFI	CCNGG	1 cut(s)	322
SetI	ASST	6 cut(s)	58, 73, 102, 154, 279, 338
SfaNI	GCATC	1 cut(s)	27
SinI	GGWCC	1 cut(s)	274
SmiI	ATTTAAAT	1 cut(s)	12
SmiMI	CAYNNNNRTG	1 cut(s)	23
Sse9I	AATT	1 cut(s)	13
SseBI	AGGCCT	1 cut(s)	145
SsiI	CCGC	1 cut(s)	297
SspMI	CTAG	3 cut(s)	149, 180, 278
StuI	AGGCCT	1 cut(s)	145
StyD4I	CCNGG	1 cut(s)	320
SwaI	ATTTAAAT	1 cut(s)	12
TaiI	ACGT	1 cut(s)	58
TaqI	TCGA	2 cut(s)	186, 262
TasI	AATT	1 cut(s)	13
TauI	GCSGC	1 cut(s)	300
TfiI	GAWTC	1 cut(s)	183
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TspDTI	ATGAA	1 cut(s)	50
VpaK11BI	GGWCC	1 cut(s)	274
XbaI	TCTAGA	1 cut(s)	179
XspI	CTAG	3 cut(s)	149, 180, 278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.