Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004487

Physical Location & Seq

Genomic Coordinates Reverse (-)

28711444 .. 28715624

Gene Structure 4181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG302600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGAGTTTGTGGAGTGTGATGCTGTGCATAAAGGCTCTTATGGCCCTTTTGAGGAAGGATGTGAAAGAACATGCAGCTTCTTTGAGAGCCTTGTTCAAGCACATTGGAAGCGTTGATCAACCAAGCCAAGACGATGTTATTCTTGAGAAATTCCTAAGCTTTATCAGAGATAAGGTATTTCCTACTAAAGCTGAACTTTTGAAGCCTCAGGAGGAAATGGAGAGGCATATTACTGACTTGATAAAAAAGAGTTTACAAGATGTAACTGGAGCAGAATTTAGAATGTTTATGGACCTTTTAAAAGGTTTGAGCATCTTTGGGGATAAAGCTCCGAAAGAACAGAGGGTAGAACTTGTTGGAATTATTGAAGGACAGGCTGATTTAGATGCTCAATTCAATGTTTCAGACGCAGACCATATCGACAGGTTGATATCTTGCCTATTTATGGCTCTGCCATTTATTGTGAGAGGTGCACCAAGCAGCAAATTCCTCAACTATCTGAACAAACACATCCTTCCTGTTTCGGATAAGCTTCCTGATGAACGAAGGCTAGATTTGCTGAAGGCCCTTGCAGAAGTTGCACCATTCACCACACCACAAGATTCACGTCAGATTCTACCTTCTGTGGTTCAGCTGTTAAAGAAAAACATGCCTCGGAGAAAGACGGAGAGGAGTTCAACTTCACTTATGTCGAATGCTTGTTGTACACATTTCACCATCTTGCTCACAAGGTTCCAAATGCTACCAACAGTTTATGCGGCGACAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009555 GO:0010941 GO:0032501 GO:0032502 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

API5

Protein Analysis

256

Amino Acids

29.07

Weight (kDa)

9.0

Isoelectric Point (pI)

57.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
API5	PF05918	11 - 230	5.5e-85	Apoptosis inhibitory protein 5 (API5)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34040 AT2G34040 AT2G34040
fragaria_vesca	FvH4_3g08240 FvH4_3g08240 FvH4_3g08240
malus_domestica	MD05G1306200.v1.1 MD10G1285200.v1.1
prunus_persica	Prupe.4G056400_v2.0.a1 Prupe.4G056400_v2.0.a1 Prupe.4G056400_v2.0.a1
pyrus_communis	pycom05g28330 pycom10g23830
rosa_chinensis	RchiOBHm_Chr5g0009911 RchiOBHm_Chr7g0217661
rosa_laevigata	RLG00000002451 RLG00000031709
rosa_multiflora	Rmu_sc0001300.1_g000008 Rmu_sc0001709.1_g000015
rosa_roxburghii	Rroxscaffold_1G00066270
rosa_rugosa	Rorug04G0446700 Rorug04G0446800 Rorug07G0170700
rosa_samantha	Rh5AG078400 Rh5BG073300 Rh5CG085700 Rh5DG073800 Rh7AG310900 Rh7BG302600 Rh7CG329800
rosa_wichuraiana	Rw5G007210 Rw7G026380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	758
AcsI	RAATTY	3 cut(s)	149, 275, 485
AcuI	CTGAAG	1 cut(s)	581
AfaI	GTAC	1 cut(s)	706
AfiI	CCNNNNNNNGG	2 cut(s)	51, 445
AgsI	TTSAA	5 cut(s)	97, 202, 368, 397, 678
AjiI	CACGTC	1 cut(s)	608
AluBI	AGCT	6 cut(s)	77, 159, 191, 329, 532, 634
AluI	AGCT	6 cut(s)	77, 159, 191, 329, 532, 634
Alw21I	GWGCWC	1 cut(s)	475
Alw44I	GTGCAC	1 cut(s)	471
AoxI	GGCC	2 cut(s)	42, 564
ApaLI	GTGCAC	1 cut(s)	471
ApeKI	GCWGC	2 cut(s)	74, 480
ApoI	RAATTY	3 cut(s)	149, 275, 485
AspS9I	GGNCC	3 cut(s)	43, 292, 565
AsuHPI	GGTGA	2 cut(s)	580, 706
AvaII	GGWCC	1 cut(s)	292
AxyI	CCTNAGG	1 cut(s)	207
BaeGI	GKGCMC	1 cut(s)	475
Bbv12I	GWGCWC	1 cut(s)	475
BbvI	GCAGC	2 cut(s)	86, 492
BccI	CCATC	1 cut(s)	725
BclI	TGATCA	1 cut(s)	115
BfaI	CTAG	1 cut(s)	551
BisI	GCNGC	3 cut(s)	75, 481, 759
BlsI	GCNGC	3 cut(s)	76, 482, 760
Bme18I	GGWCC	1 cut(s)	292
BmgBI	CACGTC	1 cut(s)	608
BmgT120I	GGNCC	3 cut(s)	43, 292, 565
BmiI	GGNNCC	1 cut(s)	734
BmsI	GCATC	3 cut(s)	9, 321, 376
BpmI	CTGGAG	1 cut(s)	288
Bpu10I	CCTNAGC	1 cut(s)	155
BpuEI	CTTGAG	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	653
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 445
Bse1I	ACTGG	1 cut(s)	271
Bse21I	CCTNAGG	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	653
BseGI	GGATG	2 cut(s)	64, 510
BseLI	CCNNNNNNNGG	2 cut(s)	51, 445
BseMII	CTCAG	1 cut(s)	221
BseNI	ACTGG	1 cut(s)	271
BseRI	GAGGAG	1 cut(s)	685
BseSI	GKGCMC	1 cut(s)	475
BseXI	GCAGC	2 cut(s)	86, 492
BshFI	GGCC	2 cut(s)	44, 566
BsiHKAI	GWGCWC	1 cut(s)	475
BslI	CCNNNNNNNGG	2 cut(s)	51, 445
BsmI	GAATGC	1 cut(s)	700
BsnI	GGCC	2 cut(s)	44, 566
Bsp1286I	GDGCHC	1 cut(s)	475
Bsp1407I	TGTACA	1 cut(s)	704
Bsp143I	GATC	1 cut(s)	115
BspACI	CCGC	1 cut(s)	758
BspANI	GGCC	2 cut(s)	44, 566
BspCNI	CTCAG	1 cut(s)	220
BspLI	GGNNCC	1 cut(s)	734
BsrGI	TGTACA	1 cut(s)	704
BsrI	ACTGG	1 cut(s)	271
BssECI	CCNNGG	1 cut(s)	653
BssMI	GATC	1 cut(s)	115
Bst4CI	ACNGT	1 cut(s)	751
BstAPI	GCANNNNNTGC	1 cut(s)	578
BstAUI	TGTACA	1 cut(s)	704
BstDEI	CTNAG	2 cut(s)	155, 207
BstF5I	GGATG	2 cut(s)	64, 510
BstKTI	GATC	1 cut(s)	118
BstMBI	GATC	1 cut(s)	115
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 556, 578
BstNSI	RCATGY	2 cut(s)	74, 652
BstSLI	GKGCMC	1 cut(s)	475
BstV1I	GCAGC	2 cut(s)	86, 492
Bsu36I	CCTNAGG	1 cut(s)	207
BsuRI	GGCC	2 cut(s)	44, 566
BtrI	CACGTC	1 cut(s)	608
BtsCI	GGATG	2 cut(s)	64, 510
Cfr13I	GGNCC	3 cut(s)	43, 292, 565
CseI	GACGC	1 cut(s)	416
Csp6I	GTAC	1 cut(s)	705
CviAII	CATG	2 cut(s)	71, 649
CviQI	GTAC	1 cut(s)	705
DdeI	CTNAG	2 cut(s)	155, 207
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
DraI	TTTAAA	1 cut(s)	300
Eco32I	GATATC	1 cut(s)	432
Eco47I	GGWCC	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	581
Eco81I	CCTNAGG	1 cut(s)	207
EcoO109I	RGGNCCY	1 cut(s)	565
EcoRV	GATATC	1 cut(s)	432
FaeI	CATG	2 cut(s)	74, 652
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FatI	CATG	2 cut(s)	70, 648
FbaI	TGATCA	1 cut(s)	115
Fnu4HI	GCNGC	3 cut(s)	75, 481, 759
FokI	GGATG	2 cut(s)	71, 497
Fsp4HI	GCNGC	3 cut(s)	75, 481, 759
FspBI	CTAG	1 cut(s)	551
GluI	GCNGC	3 cut(s)	75, 481, 759
GsuI	CTGGAG	1 cut(s)	288
HaeIII	GGCC	2 cut(s)	44, 566
HgaI	GACGC	1 cut(s)	416
Hin1II	CATG	2 cut(s)	74, 652
HindIII	AAGCTT	2 cut(s)	157, 530
HinfI	GANTC	2 cut(s)	602, 613
HphI	GGTGA	2 cut(s)	580, 706
Hpy166II	GTNNAC	3 cut(s)	254, 473, 707
Hpy188I	TCNGA	7 cut(s)	167, 333, 406, 501, 526, 612, 657
Hpy188III	TCNNGA	3 cut(s)	143, 209, 536
Hpy8I	GTNNAC	3 cut(s)	254, 473, 707
HpyAV	CCTTC	6 cut(s)	49, 362, 524, 540, 556, 630
HpyCH4III	ACNGT	1 cut(s)	751
HpyCH4IV	ACGT	1 cut(s)	607
HpyCH4V	TGCA	5 cut(s)	27, 74, 473, 572, 581
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 556, 578
HpyF3I	CTNAG	2 cut(s)	155, 207
HpySE526I	ACGT	1 cut(s)	607
Hsp92II	CATG	2 cut(s)	74, 652
Ksp22I	TGATCA	1 cut(s)	115
Kzo9I	GATC	1 cut(s)	115
LmnI	GCTCC	2 cut(s)	269, 334
LpnPI	CCDG	6 cut(s)	194, 252, 359, 409, 531, 549
Lsp1109I	GCAGC	2 cut(s)	86, 492
LweI	GCATC	3 cut(s)	9, 321, 376
MaeI	CTAG	1 cut(s)	551
MaeII	ACGT	1 cut(s)	607
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MhlI	GDGCHC	1 cut(s)	475
MluCI	AATT	5 cut(s)	149, 275, 360, 392, 485
MmeI	TCCRAC	1 cut(s)	337
MnlI	CCTC	9 cut(s)	45, 205, 216, 216, 336, 461, 500, 663, 663
MseI	TTAA	2 cut(s)	299, 638
MspA1I	CMGCKG	1 cut(s)	634
Mva1269I	GAATGC	1 cut(s)	700
MwoI	GCNNNNNNNGC	3 cut(s)	41, 556, 578
NdeII	GATC	1 cut(s)	115
NlaIII	CATG	2 cut(s)	74, 652
NlaIV	GGNNCC	1 cut(s)	734
NspI	RCATGY	2 cut(s)	74, 652
PctI	GAATGC	1 cut(s)	700
PfeI	GAWTC	2 cut(s)	602, 613
PkrI	GCNGC	3 cut(s)	76, 482, 760
PspN4I	GGNNCC	1 cut(s)	734
PspPI	GGNCC	3 cut(s)	43, 292, 565
PvuII	CAGCTG	1 cut(s)	634
RsaI	GTAC	1 cut(s)	706
RsaNI	GTAC	1 cut(s)	705
SaqAI	TTAA	2 cut(s)	299, 638
SatI	GCNGC	3 cut(s)	75, 481, 759
Sau3AI	GATC	1 cut(s)	115
Sau96I	GGNCC	3 cut(s)	43, 292, 565
SduI	GDGCHC	1 cut(s)	475
SfaNI	GCATC	3 cut(s)	9, 321, 376
SinI	GGWCC	1 cut(s)	292
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	5 cut(s)	149, 275, 360, 392, 485
SsiI	CCGC	1 cut(s)	758
SspMI	CTAG	1 cut(s)	551
TaaI	ACNGT	1 cut(s)	751
TaiI	ACGT	1 cut(s)	610
TaqI	TCGA	2 cut(s)	420, 692
TasI	AATT	5 cut(s)	149, 275, 360, 392, 485
TatI	WGTACW	1 cut(s)	704
TauI	GCSGC	1 cut(s)	761
TfiI	GAWTC	2 cut(s)	602, 613
Tru1I	TTAA	2 cut(s)	299, 638
Tru9I	TTAA	2 cut(s)	299, 638
TseI	GCWGC	2 cut(s)	74, 480
TspDTI	ATGAA	1 cut(s)	555
TspGWI	ACGGA	1 cut(s)	680
VneI	GTGCAC	1 cut(s)	471
VpaK11BI	GGWCC	1 cut(s)	292
XapI	RAATTY	3 cut(s)	149, 275, 485
XceI	RCATGY	2 cut(s)	74, 652
XspI	CTAG	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.