Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001709.1

Orthogroup ID

OG0004487

Physical Location & Seq

Genomic Coordinates Reverse (-)

46198 .. 51777

Gene Structure 5580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001709.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1668 bp

atggcggcaccagcagctgacccctccgacgaggccaagcacatcgagaagctctacgagttcggcgagcgactcaacgagtccaaggacaaatcccagaatgtcgaggactacgaggggattatcagtgcggcaaagacgagcatgaaggccaagcagctggctgcacagcttattcccaggttcttcaagttcttccccgagctttcgtcgccggcgatagatactcaccttgatttgattgaagaagaagagcttggggttcgagtgcaagctattcgggggcttccccttttctgcaaggacacccctgaacacatctcgaagattgtagacattcttgtgcaactcctgcaagctgatgagtttgtggagcgtgatgctgtgcataaggctcttatggcccttttgaggcaggatgtgaaagcttctttgacagccttgttcaagcacattggaagtgttgatgaacctacccaagaggatgttattcgtgagaaagtcctaagctttatcagagataaggtatttcctattaaagctgaagttttgaagcctcaggaggagatggagaggcatattactgacttgataaaaaagagtttagaagatgtaactggagcagagtttagaatgtttatggactttttaaaaggtctgagcatctttggggagaaagctccgaaagaacggatggtagaacttattggaattattgaaggacaagccgatttagatgctcaattcaatgtatcagatgcagaccatatcgacaggttgatatcttgcctatttatggctctgccatttattgtgagaggtgcatcaagcagcaaattcctcaactatctgaacaaacacatccttcctgtttcggataagcttcctgatgaacgaaggctagatttgctcaaggcccttgcagaagttgcaccattcaccacaccacaagattcacgtcagattcttccttctgtggttcagctgttaaagaaaaacatgcctcggagaaagactggagaggagttcaacttcacttatgtcgaatgcttgttgtacacatttcaccatcttgctcacaaggttccaaatgctaccaacagtttatgcggttacaagatagtaaccggacaaccatcagataggcttggtgaggactttacagagcagtataaggaattcacagagaggttgagttacgtggaggagttaaccagggctaccatgaagaaattaacccaaggaatggccgaaaagaacaaggcgatggcagctgcaaaatctgatgaagcaaaggacaacatcaaaactgaaaagcagaacactacaactgggttgcgaacctgcaataacatattggcaatgacaaaggcactgcattcaaaaacaccttcatttattggagacaagagcatcaacctatcttggaaagaagtgccaaaaccttctgtgccctcaagcacaccagccacaggtggaaaacgacctgctaatgctgccaatggatctggcaatccttcaaagaagggccgtggtgctggaggattgcaacatcagcttgttaatagagcatttgaagggttatctcatggcggaaggagtggcgggacaaggggccgaggcagagggtggggtggacgcggaagaggaaggggttacaacagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009555 GO:0010941 GO:0032501 GO:0032502 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

API5

Protein Analysis

555

Amino Acids

61.8

Weight (kDa)

8.77

Isoelectric Point (pI)

43.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34040 AT2G34040 AT2G34040
fragaria_vesca	FvH4_3g08240 FvH4_3g08240 FvH4_3g08240
malus_domestica	MD05G1306200.v1.1 MD10G1285200.v1.1
prunus_persica	Prupe.4G056400_v2.0.a1 Prupe.4G056400_v2.0.a1 Prupe.4G056400_v2.0.a1
pyrus_communis	pycom05g28330 pycom10g23830
rosa_chinensis	RchiOBHm_Chr5g0009911 RchiOBHm_Chr7g0217661
rosa_laevigata	RLG00000002451 RLG00000031709
rosa_multiflora	Rmu_sc0001300.1_g000008 Rmu_sc0001709.1_g000015
rosa_roxburghii	Rroxscaffold_1G00066270
rosa_rugosa	Rorug04G0446700 Rorug04G0446800 Rorug07G0170700
rosa_samantha	Rh5AG078400 Rh5BG073300 Rh5CG085700 Rh5DG073800 Rh7AG310900 Rh7BG302600 Rh7CG329800
rosa_wichuraiana	Rw5G007210 Rw7G026380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1352, 1495
AccB1I	GGYRCC	1 cut(s)	7
AccB7I	CCANNNNNTGG	1 cut(s)	1246
AccI	GTMKAC	1 cut(s)	333
AccII	CGCG	1 cut(s)	1641
AciI	CCGC	6 cut(s)	5, 131, 1110, 1593, 1605, 1641
AclWI	GGATC	1 cut(s)	1513
AcoI	YGGCCR	1 cut(s)	1248
AcsI	RAATTY	2 cut(s)	836, 1178
AcuI	CTGAAG	1 cut(s)	564
AfaI	GTAC	1 cut(s)	1058
AfiI	CCNNNNNNNGG	4 cut(s)	411, 796, 1246, 1472
AjiI	CACGTC	1 cut(s)	959
AjnI	CCWGG	2 cut(s)	179, 1214
AjuI	GAANNNNNNNTTGG	2 cut(s)	240, 272
Alw26I	GTCTC	1 cut(s)	1398
AlwI	GGATC	1 cut(s)	1513
AlwNI	CAGNNNCTG	1 cut(s)	17
Ama87I	CYCGRG	1 cut(s)	200
AoxI	GGCC	7 cut(s)	33, 150, 402, 915, 1248, 1528, 1615
ApeKI	GCWGC	7 cut(s)	14, 157, 164, 831, 1271, 1274, 1496
ApoI	RAATTY	2 cut(s)	836, 1178
AspS9I	GGNCC	4 cut(s)	403, 916, 1528, 1615
AsuHPI	GGTGA	4 cut(s)	221, 931, 1058, 1163
AvaI	CYCGRG	1 cut(s)	200
AxyI	CCTNAGG	1 cut(s)	558
BaeGI	GKGCMC	1 cut(s)	1455
BanI	GGYRCC	1 cut(s)	7
BbvI	GCAGC	7 cut(s)	26, 151, 169, 843, 1261, 1283, 1483
BccI	CCATC	5 cut(s)	562, 688, 1077, 1144, 1261
BceAI	ACGGC	1 cut(s)	1515
BcgI	CGANNNNNNTGC	4 cut(s)	260, 294, 719, 753
BciT130I	CCWGG	2 cut(s)	181, 1216
BcoDI	GTCTC	1 cut(s)	1398
BfaI	CTAG	1 cut(s)	902
BfuAI	ACCTGC	2 cut(s)	1352, 1495
BisI	GCNGC	9 cut(s)	6, 15, 132, 158, 165, 832, 1272, 1275, 1497
BlsI	GCNGC	9 cut(s)	7, 16, 133, 159, 166, 833, 1273, 1276, 1498
Bme1390I	CCNGG	2 cut(s)	181, 1216
BmeT110I	CYCGRG	1 cut(s)	200
BmgBI	CACGTC	1 cut(s)	959
BmgT120I	GGNCC	4 cut(s)	403, 916, 1528, 1615
BmiI	GGNNCC	3 cut(s)	9, 1086, 1616
BmrFI	CCNGG	2 cut(s)	181, 1216
BmrI	ACTGGG	1 cut(s)	1341
BmsI	GCATC	6 cut(s)	370, 672, 727, 748, 833, 1422
BmuI	ACTGGG	1 cut(s)	1341
BpmI	CTGGAG	3 cut(s)	639, 1038, 1560
Bpu10I	CCTNAGC	1 cut(s)	506
BpuEI	CTTGAG	2 cut(s)	896, 1441
BsaAI	YACGTR	1 cut(s)	1201
BsaJI	CCNNGG	7 cut(s)	84, 179, 1004, 1215, 1240, 1531, 1618
BsaWI	WCCGGW	1 cut(s)	1127
Bsc4I	CCNNNNNNNGG	4 cut(s)	411, 796, 1246, 1472
Bse118I	RCCGGY	1 cut(s)	214
Bse1I	ACTGG	3 cut(s)	622, 1021, 1336
Bse21I	CCTNAGG	1 cut(s)	558
Bse3DI	GCAATG	1 cut(s)	1368
BseBI	CCWGG	2 cut(s)	181, 1216
BseDI	CCNNGG	7 cut(s)	84, 179, 1004, 1215, 1240, 1531, 1618
BseGI	GGATG	4 cut(s)	424, 490, 699, 861
BseLI	CCNNNNNNNGG	4 cut(s)	411, 796, 1246, 1472
BseMI	GCAATG	1 cut(s)	1368
BseMII	CTCAG	2 cut(s)	572, 650
BseNI	ACTGG	3 cut(s)	622, 1021, 1336
BseRI	GAGGAG	3 cut(s)	578, 1037, 1220
BseSI	GKGCMC	1 cut(s)	1455
BseXI	GCAGC	7 cut(s)	26, 151, 169, 843, 1261, 1283, 1483
BsgI	GTGCAG	1 cut(s)	150
Bsh1236I	CGCG	1 cut(s)	1641
BshFI	GGCC	7 cut(s)	35, 152, 404, 917, 1250, 1530, 1617
BshNI	GGYRCC	1 cut(s)	7
BsiHKCI	CYCGRG	1 cut(s)	200
BsiSI	CCGG	2 cut(s)	215, 1128
BslFI	GGGAC	1 cut(s)	1621
BslI	CCNNNNNNNGG	4 cut(s)	411, 796, 1246, 1472
BsmAI	GTCTC	1 cut(s)	1398
BsmFI	GGGAC	1 cut(s)	1621
BsmI	GAATGC	2 cut(s)	1052, 1378
BsnI	GGCC	7 cut(s)	35, 152, 404, 917, 1250, 1530, 1617
BsoBI	CYCGRG	1 cut(s)	200
Bsp1286I	GDGCHC	1 cut(s)	1455
Bsp1407I	TGTACA	1 cut(s)	1056
Bsp143I	GATC	1 cut(s)	1505
BspACI	CCGC	6 cut(s)	5, 131, 1110, 1593, 1605, 1641
BspANI	GGCC	7 cut(s)	35, 152, 404, 917, 1250, 1530, 1617
BspCNI	CTCAG	2 cut(s)	571, 651
BspFNI	CGCG	1 cut(s)	1641
BspLI	GGNNCC	3 cut(s)	9, 1086, 1616
BspMI	ACCTGC	2 cut(s)	1352, 1495
BspPI	GGATC	1 cut(s)	1513
BspQI	GCTCTTC	1 cut(s)	246
BspT107I	GGYRCC	1 cut(s)	7
BsrDI	GCAATG	1 cut(s)	1368
BsrFI	RCCGGY	1 cut(s)	214
BsrGI	TGTACA	1 cut(s)	1056
BsrI	ACTGG	3 cut(s)	622, 1021, 1336
BssAI	RCCGGY	1 cut(s)	214
BssECI	CCNNGG	7 cut(s)	84, 179, 1004, 1215, 1240, 1531, 1618
BssMI	GATC	1 cut(s)	1505
BssT1I	CCWWGG	2 cut(s)	84, 1240
Bst2UI	CCWGG	2 cut(s)	181, 1216
Bst4CI	ACNGT	1 cut(s)	1103
Bst6I	CTCTTC	2 cut(s)	246, 1639
BstAPI	GCANNNNNTGC	2 cut(s)	352, 929
BstAUI	TGTACA	1 cut(s)	1056
BstBAI	YACGTR	1 cut(s)	1201
BstC8I	GCNNGC	5 cut(s)	68, 162, 216, 273, 357
BstDEI	CTNAG	3 cut(s)	506, 558, 659
BstDSI	CCRYGG	1 cut(s)	1531
BstF5I	GGATG	4 cut(s)	424, 490, 699, 861
BstFNI	CGCG	1 cut(s)	1641
BstKTI	GATC	1 cut(s)	1508
BstMAI	GTCTC	1 cut(s)	1398
BstMBI	GATC	1 cut(s)	1505
BstNI	CCWGG	2 cut(s)	181, 1216
BstNSI	RCATGY	1 cut(s)	1003
BstSCI	CCNGG	2 cut(s)	179, 1214
BstSLI	GKGCMC	1 cut(s)	1455
BstUI	CGCG	1 cut(s)	1641
BstV1I	GCAGC	7 cut(s)	26, 151, 169, 843, 1261, 1283, 1483
BstX2I	RGATCY	1 cut(s)	1505
BstXI	CCANNNNNNTGG	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	1505
Bsu36I	CCTNAGG	1 cut(s)	558
BsuRI	GGCC	7 cut(s)	35, 152, 404, 917, 1250, 1530, 1617
BtgI	CCRYGG	1 cut(s)	1531
BtgZI	GCGATG	1 cut(s)	1280
BtrI	CACGTC	1 cut(s)	959
BtsCI	GGATG	4 cut(s)	424, 490, 699, 861
BtsI	GCAGTG	1 cut(s)	1373
BtsIMutI	CAGTG	2 cut(s)	133, 1373
BveI	ACCTGC	2 cut(s)	1352, 1495
Cac8I	GCNNGC	5 cut(s)	68, 162, 216, 273, 357
CaiI	CAGNNNCTG	1 cut(s)	17
Cfr10I	RCCGGY	1 cut(s)	214
Cfr13I	GGNCC	4 cut(s)	403, 916, 1528, 1615
CseI	GACGC	1 cut(s)	1647
Csp6I	GTAC	1 cut(s)	1057
CviAII	CATG	4 cut(s)	145, 1000, 1225, 1589
CviQI	GTAC	1 cut(s)	1057
DdeI	CTNAG	3 cut(s)	506, 558, 659
DpnI	GATC	1 cut(s)	1507
DpnII	GATC	1 cut(s)	1505
DraI	TTTAAA	1 cut(s)	651
EaeI	YGGCCR	1 cut(s)	1248
Eam1104I	CTCTTC	2 cut(s)	246, 1639
EarI	CTCTTC	2 cut(s)	246, 1639
EciI	GGCGGA	1 cut(s)	1608
Eco130I	CCWWGG	2 cut(s)	84, 1240
Eco32I	GATATC	1 cut(s)	783
Eco57I	CTGAAG	1 cut(s)	564
Eco81I	CCTNAGG	1 cut(s)	558
Eco88I	CYCGRG	1 cut(s)	200
EcoO109I	RGGNCCY	1 cut(s)	916
EcoRI	GAATTC	1 cut(s)	1178
EcoRII	CCWGG	2 cut(s)	179, 1214
EcoRV	GATATC	1 cut(s)	783
EcoT14I	CCWWGG	2 cut(s)	84, 1240
ErhI	CCWWGG	2 cut(s)	84, 1240
FaeI	CATG	4 cut(s)	148, 1003, 1228, 1592
FalI	AAGNNNNNCTT	2 cut(s)	240, 272
FaqI	GGGAC	1 cut(s)	1621
FatI	CATG	4 cut(s)	144, 999, 1224, 1588
FauI	CCCGC	1 cut(s)	1598
FblI	GTMKAC	1 cut(s)	333
Fnu4HI	GCNGC	9 cut(s)	6, 15, 132, 158, 165, 832, 1272, 1275, 1497
FokI	GGATG	4 cut(s)	431, 497, 706, 848
Fsp4HI	GCNGC	9 cut(s)	6, 15, 132, 158, 165, 832, 1272, 1275, 1497
FspBI	CTAG	1 cut(s)	902
GluI	GCNGC	9 cut(s)	6, 15, 132, 158, 165, 832, 1272, 1275, 1497
GsuI	CTGGAG	3 cut(s)	639, 1038, 1560
HaeIII	GGCC	7 cut(s)	35, 152, 404, 917, 1250, 1530, 1617
HapII	CCGG	2 cut(s)	215, 1128
HgaI	GACGC	1 cut(s)	1647
Hin1II	CATG	4 cut(s)	148, 1003, 1228, 1592
HincII	GTYRAC	1 cut(s)	1212
HindII	GTYRAC	1 cut(s)	1212
HindIII	AAGCTT	3 cut(s)	426, 508, 881
HinfI	GANTC	4 cut(s)	72, 80, 953, 964
HpaI	GTTAAC	1 cut(s)	1212
HpaII	CCGG	2 cut(s)	215, 1128
HphI	GGTGA	4 cut(s)	221, 931, 1058, 1163
Hpy166II	GTNNAC	4 cut(s)	334, 1059, 1212, 1637
Hpy188III	TCNNGA	5 cut(s)	46, 322, 494, 560, 887
Hpy8I	GTNNAC	4 cut(s)	334, 1059, 1212, 1637
Hpy99I	CGWCG	2 cut(s)	32, 214
HpyCH4III	ACNGT	1 cut(s)	1103
HpyCH4IV	ACGT	2 cut(s)	958, 1200
HpyF3I	CTNAG	3 cut(s)	506, 558, 659
HpySE526I	ACGT	2 cut(s)	958, 1200
Hsp92II	CATG	4 cut(s)	148, 1003, 1228, 1592
KroI	GCCGGC	1 cut(s)	214
KroNI	GCCGGC	1 cut(s)	216
KspAI	GTTAAC	1 cut(s)	1212
Kzo9I	GATC	1 cut(s)	1505
LguI	GCTCTTC	1 cut(s)	246
LmnI	GCTCC	3 cut(s)	373, 620, 685
Lsp1109I	GCAGC	7 cut(s)	26, 151, 169, 843, 1261, 1283, 1483
LweI	GCATC	6 cut(s)	370, 672, 727, 748, 833, 1422
MaeI	CTAG	1 cut(s)	902
MaeII	ACGT	2 cut(s)	958, 1200
MaeIII	GTNAC	5 cut(s)	613, 1112, 1123, 1196, 1655
MalI	GATC	1 cut(s)	1507
MboI	GATC	1 cut(s)	1505
MflI	RGATCY	1 cut(s)	1505
MhlI	GDGCHC	1 cut(s)	1455
MluCI	AATT	5 cut(s)	711, 743, 836, 1178, 1232
MlyI	GAGTC	2 cut(s)	66, 89
MmeI	TCCRAC	1 cut(s)	51
MreI	CGCCGGCG	1 cut(s)	214
MroNI	GCCGGC	1 cut(s)	214
MseI	TTAA	6 cut(s)	537, 650, 989, 1211, 1235, 1563
MslI	CAYNNNNRTG	1 cut(s)	341
MspA1I	CMGCKG	4 cut(s)	17, 160, 985, 1274
MspI	CCGG	2 cut(s)	215, 1128
MspR9I	CCNGG	2 cut(s)	181, 1216
Mva1269I	GAATGC	2 cut(s)	1052, 1378
MvaI	CCWGG	2 cut(s)	181, 1216
MvnI	CGCG	1 cut(s)	1641
NaeI	GCCGGC	1 cut(s)	216
NdeII	GATC	1 cut(s)	1505
NgoMIV	GCCGGC	1 cut(s)	214
NlaIII	CATG	4 cut(s)	148, 1003, 1228, 1592
NlaIV	GGNNCC	3 cut(s)	9, 1086, 1616
NmeAIII	GCCGAG	1 cut(s)	1643
NspI	RCATGY	1 cut(s)	1003
PciSI	GCTCTTC	1 cut(s)	246
PcsI	WCGNNNNNNNCGW	3 cut(s)	63, 111, 215
PctI	GAATGC	2 cut(s)	1052, 1378
PdiI	GCCGGC	1 cut(s)	216
PfeI	GAWTC	2 cut(s)	953, 964
PflMI	CCANNNNNTGG	1 cut(s)	1246
PkrI	GCNGC	9 cut(s)	7, 16, 133, 159, 166, 833, 1273, 1276, 1498
PleI	GAGTC	2 cut(s)	66, 88
PpsI	GAGTC	2 cut(s)	66, 88
Ppu21I	YACGTR	1 cut(s)	1201
Psp6I	CCWGG	2 cut(s)	179, 1214
PspGI	CCWGG	2 cut(s)	179, 1214
PspN4I	GGNNCC	3 cut(s)	9, 1086, 1616
PspPI	GGNCC	4 cut(s)	403, 916, 1528, 1615
PstNI	CAGNNNCTG	1 cut(s)	17
PsuI	RGATCY	1 cut(s)	1505
PvuII	CAGCTG	4 cut(s)	17, 160, 985, 1274
RsaI	GTAC	1 cut(s)	1058
RsaNI	GTAC	1 cut(s)	1057
RseI	CAYNNNNRTG	1 cut(s)	341
SapI	GCTCTTC	1 cut(s)	246
SaqAI	TTAA	6 cut(s)	537, 650, 989, 1211, 1235, 1563
SatI	GCNGC	9 cut(s)	6, 15, 132, 158, 165, 832, 1272, 1275, 1497
Sau3AI	GATC	1 cut(s)	1505
Sau96I	GGNCC	4 cut(s)	403, 916, 1528, 1615
SchI	GAGTC	2 cut(s)	66, 89
ScrFI	CCNGG	2 cut(s)	181, 1216
SduI	GDGCHC	1 cut(s)	1455
SfaNI	GCATC	6 cut(s)	370, 672, 727, 748, 833, 1422
SgrAI	CRCCGGYG	1 cut(s)	214
SmiMI	CAYNNNNRTG	1 cut(s)	341
SmlI	CTYRAG	2 cut(s)	911, 1456
SmoI	CTYRAG	2 cut(s)	911, 1456
Sse9I	AATT	5 cut(s)	711, 743, 836, 1178, 1232
SsiI	CCGC	6 cut(s)	5, 131, 1110, 1593, 1605, 1641
SspMI	CTAG	1 cut(s)	902
StyD4I	CCNGG	2 cut(s)	179, 1214
StyI	CCWWGG	2 cut(s)	84, 1240
TaaI	ACNGT	1 cut(s)	1103
TaiI	ACGT	2 cut(s)	961, 1203
TaqI	TCGA	6 cut(s)	45, 105, 265, 323, 771, 1044
TasI	AATT	5 cut(s)	711, 743, 836, 1178, 1232
TatI	WGTACW	1 cut(s)	1056
TauI	GCSGC	2 cut(s)	8, 134
TfiI	GAWTC	2 cut(s)	953, 964
Tru1I	TTAA	6 cut(s)	537, 650, 989, 1211, 1235, 1563
Tru9I	TTAA	6 cut(s)	537, 650, 989, 1211, 1235, 1563
TscAI	CASTG	2 cut(s)	133, 1380
TseI	GCWGC	7 cut(s)	14, 157, 164, 831, 1271, 1274, 1496
TspDTI	ATGAA	6 cut(s)	161, 483, 906, 1241, 1302, 1383
TspGWI	ACGGA	1 cut(s)	706
TspRI	CASTG	2 cut(s)	133, 1380
Van91I	CCANNNNNTGG	1 cut(s)	1246
XapI	RAATTY	2 cut(s)	836, 1178
XceI	RCATGY	1 cut(s)	1003
XmiI	GTMKAC	1 cut(s)	333
XspI	CTAG	1 cut(s)	902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.