Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004487

Physical Location & Seq

Genomic Coordinates Reverse (-)

33473912 .. 33485369

Gene Structure 11458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G026380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGGCGGCATCAGCAGCTGACCCCTCCGACGAAGCCAAGCACATCGAGAAGCTCTACGAGTTCGGTGAGCAACTCAATGAGTCCAAGGGCATATCCCAGGTCCTCTTTTTCCCACCAATTCGATTAAGGACTATCAGTGCGGCAAAGACGAGCATGAAGGCCAAGCAGCTCGCTGCACAGCTTATTCCCCGGGCTTTCCTTTGCCGGTTCGAGTGCAAGCTATTCGGGGGCTTTCCCCTTGTCTGCAAGGACAACCCTGAACACGTCTCGAAGATTGTAGACATTCTTGTGCAACTCCTTCAAGCTGATGAGTTTGTGGAGTGTGATGCTGTGCATAAGGCTCTTATGCCCCTTTTGAGGCAGGATGTGAAAGCTTCTTTGAGAGCCTTGTTCAAGCACATTGGAAGCGTTGATGAACCAAGCCAAGACGATGTTATTCTTGAGAAATTCCTAAGCTTTATCAGAGATAAGGTATTTCCTACTAAAGCTGAACTTTTGAAGCCTCAGGAGGAAAAGGAGAGGCATATTACTGACTTGATAAAAAAGGTCAGAATTAAGAATGTTTATGGACCTTTTAAAAGGTTTGGCATCTTTGGGGATAAAGCTCCGAAAGAACGGAGGGTAGAACTTGTTGGAATTATTGAAGGACAGGCTGATTTAGATGCTCAATTCAATGTTTCAGACGCAGACCATATCGACAGGTTGATATCTTGCCTATTTATGGCTCTGCCATTTATTGTGAGAGGTGCACCAAGCAGCAAATTCCTCAACTATCTGAACAAACACATCCTTCCTGTTTCGGATAAGGCCCTTGCAGAAGTGGCACCATTCACCACACCACAAGATTCACGTCAGATTCTACCTTCTGTGGTTCAGCTGTTAAAGAAAGACGGAGAGGAGTTCAACTTCACTTATGTCAAATGCTTGTTGTACACATTTCACCATCTTGCTCACAAGGTTCCAAATGCTACCAACAGTTTATGCGGCTACAAGATAGTAACTGGACAACCATCAAATATGCTTGGTGAGGACTTTACAGAGCAGTATATATGTTCATGTTATTGTCATTTCAAAGAAGCTAGGCTAAGAAACAGAAAGATAACTACTGGAATCACACCAACATGTTTTCCTGGTCGAAACGACCTACGCTTCTGCGATAAAATCTTAGAATCAATTGCTATGGAGCAGAATTTGTCCTGGACTTCCATTGGCAATAAGAACGTTGGCATTTCTGCCCCTAGCGAATCTTCGTCATCATCCTTTGACGAAGAGGATCCTTTTCAGGATCAAGACTACGGACGATCATGGGGGTGCTTGAAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009555 GO:0010941 GO:0032501 GO:0032502 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

API5

Protein Analysis

441

Amino Acids

49.72

Weight (kDa)

7.13

Isoelectric Point (pI)

50.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
API5	PF05918	15 - 66	4.8e-07	Apoptosis inhibitory protein 5 (API5)
API5	PF05918	77 - 349	4.3e-103	Apoptosis inhibitory protein 5 (API5)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34040 AT2G34040 AT2G34040
fragaria_vesca	FvH4_3g08240 FvH4_3g08240 FvH4_3g08240
malus_domestica	MD05G1306200.v1.1 MD10G1285200.v1.1
prunus_persica	Prupe.4G056400_v2.0.a1 Prupe.4G056400_v2.0.a1 Prupe.4G056400_v2.0.a1
pyrus_communis	pycom05g28330 pycom10g23830
rosa_chinensis	RchiOBHm_Chr5g0009911 RchiOBHm_Chr7g0217661
rosa_laevigata	RLG00000002451 RLG00000031709
rosa_multiflora	Rmu_sc0001300.1_g000008 Rmu_sc0001709.1_g000015
rosa_roxburghii	Rroxscaffold_1G00066270
rosa_rugosa	Rorug04G0446700 Rorug04G0446800 Rorug07G0170700
rosa_samantha	Rh5AG078400 Rh5BG073300 Rh5CG085700 Rh5DG073800 Rh7AG310900 Rh7BG302600 Rh7CG329800
rosa_wichuraiana	Rw5G007210 Rw7G026380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	823
AccI	GTMKAC	1 cut(s)	279
AciI	CCGC	3 cut(s)	5, 140, 984
AclI	AACGTT	1 cut(s)	1221
AclWI	GGATC	3 cut(s)	1268, 1281, 1293
AcsI	RAATTY	3 cut(s)	446, 761, 1189
AfaI	GTAC	1 cut(s)	932
AfiI	CCNNNNNNNGG	2 cut(s)	357, 721
AflIII	ACRYGT	2 cut(s)	262, 1121
AgsI	TTSAA	8 cut(s)	302, 394, 499, 644, 673, 904, 1072, 1318
AjiI	CACGTC	2 cut(s)	265, 851
AjnI	CCWGG	3 cut(s)	96, 1129, 1196
Alw21I	GWGCWC	1 cut(s)	751
Alw26I	GTCTC	1 cut(s)	271
Alw44I	GTGCAC	1 cut(s)	747
AlwI	GGATC	3 cut(s)	1268, 1281, 1293
AlwNI	CAGNNNCTG	1 cut(s)	17
Ama87I	CYCGRG	1 cut(s)	189
AoxI	GGCC	2 cut(s)	159, 807
ApaLI	GTGCAC	1 cut(s)	747
ApeKI	GCWGC	4 cut(s)	14, 166, 173, 756
ApoI	RAATTY	3 cut(s)	446, 761, 1189
AspS9I	GGNCC	3 cut(s)	100, 569, 808
AsuC2I	CCSGG	2 cut(s)	190, 191
AsuHPI	GGTGA	4 cut(s)	77, 823, 932, 1037
AvaI	CYCGRG	1 cut(s)	189
AvaII	GGWCC	2 cut(s)	100, 569
AxyI	CCTNAGG	1 cut(s)	504
BaeGI	GKGCMC	1 cut(s)	751
BamHI	GGATCC	1 cut(s)	1273
BanI	GGYRCC	1 cut(s)	823
Bbv12I	GWGCWC	1 cut(s)	751
BbvI	GCAGC	4 cut(s)	26, 160, 178, 768
BccI	CCATC	2 cut(s)	951, 1018
BcgI	CGANNNNNNTGC	2 cut(s)	205, 239
BciT130I	CCWGG	3 cut(s)	98, 1131, 1198
BcnI	CCSGG	2 cut(s)	190, 191
BcoDI	GTCTC	1 cut(s)	271
BfaI	CTAG	2 cut(s)	1080, 1239
BisI	GCNGC	7 cut(s)	6, 15, 141, 167, 174, 757, 985
BlsI	GCNGC	7 cut(s)	7, 16, 142, 168, 175, 758, 986
Bme1390I	CCNGG	5 cut(s)	98, 190, 191, 1131, 1198
Bme18I	GGWCC	2 cut(s)	100, 569
BmeT110I	CYCGRG	1 cut(s)	189
BmgBI	CACGTC	2 cut(s)	265, 851
BmgT120I	GGNCC	3 cut(s)	100, 569, 808
BmiI	GGNNCC	3 cut(s)	825, 960, 1275
BmrFI	CCNGG	5 cut(s)	98, 190, 191, 1131, 1198
BmsI	GCATC	4 cut(s)	17, 316, 597, 652
Bpu10I	CCTNAGC	1 cut(s)	452
BpuEI	CTTGAG	1 cut(s)	461
BpuMI	CCSGG	2 cut(s)	190, 191
BsaJI	CCNNGG	4 cut(s)	84, 96, 188, 189
Bsc4I	CCNNNNNNNGG	2 cut(s)	357, 721
Bse118I	RCCGGY	1 cut(s)	204
Bse1I	ACTGG	2 cut(s)	1006, 1111
Bse21I	CCTNAGG	1 cut(s)	504
BseBI	CCWGG	3 cut(s)	98, 1131, 1198
BseDI	CCNNGG	4 cut(s)	84, 96, 188, 189
BseGI	GGATG	3 cut(s)	370, 786, 1256
BseLI	CCNNNNNNNGG	2 cut(s)	357, 721
BseMII	CTCAG	1 cut(s)	518
BseNI	ACTGG	2 cut(s)	1006, 1111
BseRI	GAGGAG	1 cut(s)	911
BseSI	GKGCMC	1 cut(s)	751
BseXI	GCAGC	4 cut(s)	26, 160, 178, 768
BsgI	GTGCAG	1 cut(s)	159
BshFI	GGCC	2 cut(s)	161, 809
BshNI	GGYRCC	1 cut(s)	823
BsiHKAI	GWGCWC	1 cut(s)	751
BsiHKCI	CYCGRG	1 cut(s)	189
BsiSI	CCGG	2 cut(s)	190, 205
BslI	CCNNNNNNNGG	2 cut(s)	357, 721
BsmAI	GTCTC	1 cut(s)	271
BsmBI	CGTCTC	1 cut(s)	271
BsnI	GGCC	2 cut(s)	161, 809
BsoBI	CYCGRG	1 cut(s)	189
Bsp1286I	GDGCHC	1 cut(s)	751
Bsp1407I	TGTACA	1 cut(s)	930
Bsp143I	GATC	3 cut(s)	1273, 1285, 1301
BspACI	CCGC	3 cut(s)	5, 140, 984
BspANI	GGCC	2 cut(s)	161, 809
BspCNI	CTCAG	1 cut(s)	517
BspLI	GGNNCC	3 cut(s)	825, 960, 1275
BspPI	GGATC	3 cut(s)	1268, 1281, 1293
BspT107I	GGYRCC	1 cut(s)	823
BsrFI	RCCGGY	1 cut(s)	204
BsrGI	TGTACA	1 cut(s)	930
BsrI	ACTGG	2 cut(s)	1006, 1111
BssAI	RCCGGY	1 cut(s)	204
BssECI	CCNNGG	4 cut(s)	84, 96, 188, 189
BssMI	GATC	3 cut(s)	1273, 1285, 1301
BssT1I	CCWWGG	1 cut(s)	84
Bst2UI	CCWGG	3 cut(s)	98, 1131, 1198
Bst4CI	ACNGT	1 cut(s)	977
Bst6I	CTCTTC	1 cut(s)	1263
BstAUI	TGTACA	1 cut(s)	930
BstC8I	GCNNGC	2 cut(s)	171, 218
BstDEI	CTNAG	4 cut(s)	452, 504, 1085, 1165
BstF5I	GGATG	3 cut(s)	370, 786, 1256
BstKTI	GATC	3 cut(s)	1276, 1288, 1304
BstMAI	GTCTC	1 cut(s)	271
BstMBI	GATC	3 cut(s)	1273, 1285, 1301
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 14, 821
BstNI	CCWGG	3 cut(s)	98, 1131, 1198
BstNSI	RCATGY	1 cut(s)	1125
BstSCI	CCNGG	5 cut(s)	96, 188, 189, 1129, 1196
BstSLI	GKGCMC	1 cut(s)	751
BstV1I	GCAGC	4 cut(s)	26, 160, 178, 768
BstX2I	RGATCY	1 cut(s)	1273
BstYI	RGATCY	1 cut(s)	1273
Bsu36I	CCTNAGG	1 cut(s)	504
BsuRI	GGCC	2 cut(s)	161, 809
BtrI	CACGTC	2 cut(s)	265, 851
BtsCI	GGATG	3 cut(s)	370, 786, 1256
BtsIMutI	CAGTG	1 cut(s)	142
Cac8I	GCNNGC	2 cut(s)	171, 218
CaiI	CAGNNNCTG	1 cut(s)	17
Cfr10I	RCCGGY	1 cut(s)	204
Cfr13I	GGNCC	3 cut(s)	100, 569, 808
Cfr9I	CCCGGG	1 cut(s)	189
CseI	GACGC	1 cut(s)	692
Csp6I	GTAC	1 cut(s)	931
CviAII	CATG	4 cut(s)	154, 1056, 1122, 1305
CviQI	GTAC	1 cut(s)	931
DdeI	CTNAG	4 cut(s)	452, 504, 1085, 1165
DpnI	GATC	3 cut(s)	1275, 1287, 1303
DpnII	GATC	3 cut(s)	1273, 1285, 1301
DraI	TTTAAA	1 cut(s)	577
Eam1104I	CTCTTC	1 cut(s)	1263
EarI	CTCTTC	1 cut(s)	1263
Eco130I	CCWWGG	1 cut(s)	84
Eco32I	GATATC	1 cut(s)	708
Eco47I	GGWCC	2 cut(s)	100, 569
Eco81I	CCTNAGG	1 cut(s)	504
Eco88I	CYCGRG	1 cut(s)	189
EcoO109I	RGGNCCY	2 cut(s)	100, 808
EcoRII	CCWGG	3 cut(s)	96, 1129, 1196
EcoRV	GATATC	1 cut(s)	708
EcoT14I	CCWWGG	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	84
Esp3I	CGTCTC	1 cut(s)	271
FaeI	CATG	4 cut(s)	157, 1059, 1125, 1308
FalI	AAGNNNNNCTT	2 cut(s)	477, 509
FatI	CATG	4 cut(s)	153, 1055, 1121, 1304
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	7 cut(s)	6, 15, 141, 167, 174, 757, 985
FokI	GGATG	3 cut(s)	377, 773, 1243
Fsp4HI	GCNGC	7 cut(s)	6, 15, 141, 167, 174, 757, 985
FspBI	CTAG	2 cut(s)	1080, 1239
GluI	GCNGC	7 cut(s)	6, 15, 141, 167, 174, 757, 985
HaeIII	GGCC	2 cut(s)	161, 809
HapII	CCGG	2 cut(s)	190, 205
HgaI	GACGC	1 cut(s)	692
Hin1II	CATG	4 cut(s)	157, 1059, 1125, 1308
HindIII	AAGCTT	2 cut(s)	372, 454
HinfI	GANTC	6 cut(s)	80, 845, 856, 1110, 1169, 1244
HpaII	CCGG	2 cut(s)	190, 205
HphI	GGTGA	4 cut(s)	77, 823, 932, 1037
Hpy166II	GTNNAC	3 cut(s)	280, 749, 933
Hpy188I	TCNGA	8 cut(s)	28, 464, 551, 609, 682, 777, 802, 855
Hpy188III	TCNNGA	6 cut(s)	46, 268, 440, 506, 1283, 1289
Hpy8I	GTNNAC	3 cut(s)	280, 749, 933
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	6 cut(s)	151, 308, 638, 800, 873, 1312
HpyCH4III	ACNGT	1 cut(s)	977
HpyCH4IV	ACGT	3 cut(s)	264, 850, 1221
HpyCH4V	TGCA	7 cut(s)	176, 216, 246, 292, 334, 749, 815
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 14, 821
HpyF3I	CTNAG	4 cut(s)	452, 504, 1085, 1165
HpySE526I	ACGT	3 cut(s)	264, 850, 1221
Hsp92II	CATG	4 cut(s)	157, 1059, 1125, 1308
Kzo9I	GATC	3 cut(s)	1273, 1285, 1301
LmnI	GCTCC	2 cut(s)	610, 1183
Lsp1109I	GCAGC	4 cut(s)	26, 160, 178, 768
LweI	GCATC	4 cut(s)	17, 316, 597, 652
MaeI	CTAG	2 cut(s)	1080, 1239
MaeII	ACGT	3 cut(s)	264, 850, 1221
MaeIII	GTNAC	1 cut(s)	997
MalI	GATC	3 cut(s)	1275, 1287, 1303
MboI	GATC	3 cut(s)	1273, 1285, 1301
MboII	GAAGA	3 cut(s)	283, 1239, 1280
MfeI	CAATTG	1 cut(s)	1173
MflI	RGATCY	1 cut(s)	1273
MhlI	GDGCHC	1 cut(s)	751
MluCI	AATT	8 cut(s)	117, 446, 552, 636, 668, 761, 1173, 1189
MlyI	GAGTC	1 cut(s)	89
MmeI	TCCRAC	2 cut(s)	51, 613
MseI	TTAA	4 cut(s)	125, 555, 576, 881
MslI	CAYNNNNRTG	3 cut(s)	287, 1120, 1309
MspA1I	CMGCKG	2 cut(s)	17, 877
MspI	CCGG	2 cut(s)	190, 205
MspR9I	CCNGG	5 cut(s)	98, 190, 191, 1131, 1198
MunI	CAATTG	1 cut(s)	1173
MvaI	CCWGG	3 cut(s)	98, 1131, 1198
MwoI	GCNNNNNNNGC	3 cut(s)	11, 14, 821
NciI	CCSGG	2 cut(s)	190, 191
NdeII	GATC	3 cut(s)	1273, 1285, 1301
NlaIII	CATG	4 cut(s)	157, 1059, 1125, 1308
NlaIV	GGNNCC	3 cut(s)	825, 960, 1275
NspI	RCATGY	1 cut(s)	1125
PciI	ACATGT	1 cut(s)	1121
PfeI	GAWTC	5 cut(s)	845, 856, 1110, 1169, 1244
PfoI	TCCNGGA	1 cut(s)	1196
PkrI	GCNGC	7 cut(s)	7, 16, 142, 168, 175, 758, 986
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PpuMI	RGGWCCY	1 cut(s)	100
PscI	ACATGT	1 cut(s)	1121
Psp1406I	AACGTT	1 cut(s)	1221
Psp5II	RGGWCCY	1 cut(s)	100
Psp6I	CCWGG	3 cut(s)	96, 1129, 1196
PspGI	CCWGG	3 cut(s)	96, 1129, 1196
PspN4I	GGNNCC	3 cut(s)	825, 960, 1275
PspPI	GGNCC	3 cut(s)	100, 569, 808
PspPPI	RGGWCCY	1 cut(s)	100
PstNI	CAGNNNCTG	1 cut(s)	17
PsuI	RGATCY	1 cut(s)	1273
PvuII	CAGCTG	2 cut(s)	17, 877
RsaI	GTAC	1 cut(s)	932
RsaNI	GTAC	1 cut(s)	931
RseI	CAYNNNNRTG	3 cut(s)	287, 1120, 1309
SaqAI	TTAA	4 cut(s)	125, 555, 576, 881
SatI	GCNGC	7 cut(s)	6, 15, 141, 167, 174, 757, 985
Sau3AI	GATC	3 cut(s)	1273, 1285, 1301
Sau96I	GGNCC	3 cut(s)	100, 569, 808
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	5 cut(s)	98, 190, 191, 1131, 1198
SduI	GDGCHC	1 cut(s)	751
SfaNI	GCATC	4 cut(s)	17, 316, 597, 652
SinI	GGWCC	2 cut(s)	100, 569
SmaI	CCCGGG	1 cut(s)	191
SmiMI	CAYNNNNRTG	3 cut(s)	287, 1120, 1309
SmlI	CTYRAG	1 cut(s)	440
SmoI	CTYRAG	1 cut(s)	440
Sse9I	AATT	8 cut(s)	117, 446, 552, 636, 668, 761, 1173, 1189
SsiI	CCGC	3 cut(s)	5, 140, 984
SspMI	CTAG	2 cut(s)	1080, 1239
StyD4I	CCNGG	5 cut(s)	96, 188, 189, 1129, 1196
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	1 cut(s)	977
TaiI	ACGT	3 cut(s)	267, 853, 1224
TaqI	TCGA	6 cut(s)	45, 121, 210, 269, 696, 1135
TasI	AATT	8 cut(s)	117, 446, 552, 636, 668, 761, 1173, 1189
TatI	WGTACW	1 cut(s)	930
TauI	GCSGC	3 cut(s)	8, 143, 987
TfiI	GAWTC	5 cut(s)	845, 856, 1110, 1169, 1244
Tru1I	TTAA	4 cut(s)	125, 555, 576, 881
Tru9I	TTAA	4 cut(s)	125, 555, 576, 881
TscAI	CASTG	1 cut(s)	142
TseI	GCWGC	4 cut(s)	14, 166, 173, 756
TspDTI	ATGAA	3 cut(s)	170, 429, 1044
TspGWI	ACGGA	3 cut(s)	631, 906, 1311
TspMI	CCCGGG	1 cut(s)	189
TspRI	CASTG	1 cut(s)	142
VneI	GTGCAC	1 cut(s)	747
VpaK11BI	GGWCC	2 cut(s)	100, 569
XapI	RAATTY	3 cut(s)	446, 761, 1189
XceI	RCATGY	1 cut(s)	1125
XmaI	CCCGGG	1 cut(s)	189
XmiI	GTMKAC	1 cut(s)	279
XspI	CTAG	2 cut(s)	1080, 1239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.