AT2G35260

CAAX protease self-immunity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011430
Physical Location & Seq
Forward (+)
14849357 .. 14852045
2689 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G35260.1

Sequence Viewer

Length: 1149 bp
ATGGAGCTTCCGTTACTCTCGTATGCTAGCTCCGCGTCGTTTTCACGGACAGGCTTATGCTCTTCTTCTTCTTCCTCCTCAACTAGTATCTATGAGTTTCCGGAGAGAAGACGGAGTTTAAAATTGAGATTCAATGGTGGAGAAAGGTCACGAAGCGTTATAGCTTCCGCTGAACGGAGCAGTGAAGGGATTGAGAAGACAACAGACACCGTCGGTGGCGGAGGAGGAGGAGGAGCAGGCAGATTTGCTGGTACTGCCATGGAGGTTACTACACTTGATCGTGGTTTTGCTAACTCCACCACCGTTGATTTTCCGATCTGGGACAAAATCGGCGCCGTCGTTAGACTTACTTATGGAATCGGAATATATGGAGCAATGGCTGTAGCAGGAAGATTTATATGTTCAGTGACTGGAATTGATTCATCTGGTGGATTTGATCCTTCTCTTGATGCACTACTTGCTGGACTTGGCTATGCAACACCACCAATCATGGCTCTTCTCTTCATACTCGACGATGAAGTTGTGAAGCTATCACCGCATGCTCGGGCCATTAGAGATGTGGAAGATGAAGAACTAAGAAGCTTTTTCTTCGGAATGTCCCCATGGCAGTTTATACTCATTGTCGCGGCCAGTTCAATAGGAGAAGAGCTCTTTTACCGTGTTGCTGTACAGGGTGCTCTGTCTGATATATTCTTGAAAGGAACACAGTTGATGACAGATTCTAGAGGCATGGCATCTCTGACCGGAGTGTTTCCTCCATTTGTCCCATTTGCTGAAGTCTTTGCAGCTGTAATCACCGCGACTCTCACAGGCTCTCTCTACTTTCTTGCTGCGTCTCCAAAAGACCCGACATACATAGTTGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTAAGAAGCTTTTGTCAGCTTGGTATGAGAAGAGACAGATGAAGAAGATTTACTCTCCACTCCTTGAAGGACTCTTAGCCCTCTATCTCGGTATTGAATGGGTTCAGACGGATAATATATTAGCACCGATGATGACGCATGGTATATACTCGGCGGTCATATTAGGGCATGGGCTGTGGAAAATTCACGATCACCGGAGAAGGTTACGCCGGAGAATCGAACACATTAGATCGGAGGCCACGGATAAGTTGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abi

Protein Analysis

382

Amino Acids

41.71

Weight (kDa)

8.42

Isoelectric Point (pI)

56.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rce1-like PF02517 200 - 349 1.1e-06 Type II CAAX prenyl endopeptidase Rce1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 332
AccII CGCG 3 cut(s) 35, 626, 800
AccIII TCCGGA 1 cut(s) 100
AciI CCGC 7 cut(s) 33, 168, 219, 536, 626, 798, 1046
AclWI GGATC 1 cut(s) 431
AcoI YGGCCR 1 cut(s) 627
AcsI RAATTY 1 cut(s) 1074
AcuI CTGAAG 1 cut(s) 795
AcyI GRCGYC 1 cut(s) 333
AfaI GTAC 2 cut(s) 253, 669
AfiI CCNNNNNNNGG 1 cut(s) 174
AgsI TTSAA 5 cut(s) 133, 636, 697, 959, 989
AhlI ACTAGT 1 cut(s) 83
AluBI AGCT 9 cut(s) 7, 30, 164, 529, 582, 649, 788, 901, 911
AluI AGCT 9 cut(s) 7, 30, 164, 529, 582, 649, 788, 901, 911
Alw21I GWGCWC 2 cut(s) 651, 679
Alw26I GTCTC 2 cut(s) 840, 919
AlwI GGATC 1 cut(s) 431
AlwNI CAGNNNCTG 1 cut(s) 410
Ama87I CYCGRG 1 cut(s) 543
Aor13HI TCCGGA 1 cut(s) 100
AoxI GGCC 3 cut(s) 546, 627, 1128
ApeKI GCWGC 2 cut(s) 785, 830
ApoI RAATTY 1 cut(s) 1074
Asp700I GAANNNNTTC 2 cut(s) 418, 993
AspLEI GCGC 1 cut(s) 335
AspS9I GGNCC 1 cut(s) 546
AsuC2I CCSGG 1 cut(s) 866
AsuHPI GGTGA 3 cut(s) 525, 787, 1076
AsuNHI GCTAGC 1 cut(s) 26
AvaI CYCGRG 1 cut(s) 543
BanI GGYRCC 1 cut(s) 332
BanII GRGCYC 1 cut(s) 651
BarI GAAGNNNNNNTAC 2 cut(s) 926, 958
BbsI GAAGAC 2 cut(s) 115, 203
Bbv12I GWGCWC 2 cut(s) 651, 679
BbvI GCAGC 2 cut(s) 797, 817
BceAI ACGGC 2 cut(s) 320, 896
BcnI CCSGG 1 cut(s) 866
BcoDI GTCTC 2 cut(s) 840, 919
BcuI ACTAGT 1 cut(s) 83
BfaI CTAG 3 cut(s) 27, 84, 723
BfmI CTRYAG 1 cut(s) 381
BfoI RGCGCY 1 cut(s) 336
BisI GCNGC 3 cut(s) 627, 786, 831
BlsI GCNGC 3 cut(s) 628, 787, 832
Bme1390I CCNGG 1 cut(s) 866
BmeT110I CYCGRG 1 cut(s) 543
BmgT120I GGNCC 1 cut(s) 546
BmiI GGNNCC 1 cut(s) 334
BmrFI CCNGG 1 cut(s) 866
BmsI GCATC 2 cut(s) 439, 743
BmtI GCTAGC 1 cut(s) 30
BpiI GAAGAC 2 cut(s) 115, 203
BplI GAGNNNNNCTC 2 cut(s) 633, 665
BpuMI CCSGG 1 cut(s) 866
BsaHI GRCGYC 1 cut(s) 333
BsaJI CCNNGG 4 cut(s) 258, 602, 864, 1131
BsaWI WCCGGW 3 cut(s) 100, 743, 1086
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 174
Bse1I ACTGG 2 cut(s) 415, 630
Bse3DI GCAATG 1 cut(s) 381
BseAI TCCGGA 1 cut(s) 100
BseDI CCNNGG 4 cut(s) 258, 602, 864, 1131
BseLI CCNNNNNNNGG 1 cut(s) 174
BseMI GCAATG 1 cut(s) 381
BseNI ACTGG 2 cut(s) 415, 630
BseRI GAGGAG 5 cut(s) 67, 237, 240, 243, 246
BseXI GCAGC 2 cut(s) 797, 817
Bsh1236I CGCG 3 cut(s) 35, 626, 800
BshFI GGCC 3 cut(s) 548, 629, 1130
BshNI GGYRCC 1 cut(s) 332
BsiHKAI GWGCWC 2 cut(s) 651, 679
BsiHKCI CYCGRG 1 cut(s) 543
BsiSI CCGG 5 cut(s) 101, 744, 866, 1087, 1102
BslFI GGGAC 3 cut(s) 335, 583, 749
BslI CCNNNNNNNGG 1 cut(s) 174
BsmAI GTCTC 2 cut(s) 840, 919
BsmBI CGTCTC 1 cut(s) 840
BsmFI GGGAC 3 cut(s) 335, 583, 749
BsnI GGCC 3 cut(s) 548, 629, 1130
BsoBI CYCGRG 1 cut(s) 543
Bsp1286I GDGCHC 2 cut(s) 651, 679
Bsp13I TCCGGA 1 cut(s) 100
Bsp1407I TGTACA 1 cut(s) 667
Bsp143I GATC 5 cut(s) 277, 315, 436, 1081, 1121
Bsp19I CCATGG 2 cut(s) 258, 602
BspACI CCGC 7 cut(s) 33, 168, 219, 536, 626, 798, 1046
BspANI GGCC 3 cut(s) 548, 629, 1130
BspEI TCCGGA 1 cut(s) 100
BspFNI CGCG 3 cut(s) 35, 626, 800
BspLI GGNNCC 1 cut(s) 334
BspOI GCTAGC 1 cut(s) 30
BspPI GGATC 1 cut(s) 431
BspQI GCTCTTC 3 cut(s) 67, 501, 639
BspT107I GGYRCC 1 cut(s) 332
BsrDI GCAATG 1 cut(s) 381
BsrGI TGTACA 1 cut(s) 667
BsrI ACTGG 2 cut(s) 415, 630
BssECI CCNNGG 4 cut(s) 258, 602, 864, 1131
BssMI GATC 5 cut(s) 277, 315, 436, 1081, 1121
BssNI GRCGYC 1 cut(s) 333
BssT1I CCWWGG 2 cut(s) 258, 602
Bst4CI ACNGT 4 cut(s) 211, 304, 659, 708
Bst6I CTCTTC 5 cut(s) 67, 501, 506, 639, 917
BstACI GRCGYC 1 cut(s) 333
BstAPI GCANNNNNTGC 1 cut(s) 458
BstAUI TGTACA 1 cut(s) 667
BstC8I GCNNGC 3 cut(s) 28, 238, 540
BstDEI CTNAG 2 cut(s) 575, 967
BstDSI CCRYGG 3 cut(s) 258, 602, 1131
BstFNI CGCG 3 cut(s) 35, 626, 800
BstH2I RGCGCY 1 cut(s) 336
BstHHI GCGC 1 cut(s) 335
BstKTI GATC 5 cut(s) 280, 318, 439, 1084, 1124
BstMAI GTCTC 2 cut(s) 840, 919
BstMBI GATC 5 cut(s) 277, 315, 436, 1081, 1121
BstMWI GCNNNNNNNGC 4 cut(s) 32, 254, 458, 535
BstNSI RCATGY 1 cut(s) 542
BstSCI CCNGG 1 cut(s) 864
BstSFI CTRYAG 1 cut(s) 381
BstUI CGCG 3 cut(s) 35, 626, 800
BstV1I GCAGC 2 cut(s) 797, 817
BstV2I GAAGAC 2 cut(s) 115, 203
BsuRI GGCC 3 cut(s) 548, 629, 1130
BtgI CCRYGG 3 cut(s) 258, 602, 1131
BtsI GCAGTG 1 cut(s) 187
BtsIMutI CAGTG 2 cut(s) 187, 411
Cac8I GCNNGC 3 cut(s) 28, 238, 540
CaiI CAGNNNCTG 1 cut(s) 410
CfoI GCGC 1 cut(s) 335
Cfr13I GGNCC 1 cut(s) 546
CseI GACGC 3 cut(s) 24, 822, 1036
Csp6I GTAC 2 cut(s) 252, 668
CspCI CAANNNNNGTGG 2 cut(s) 286, 321
CviAII CATG 7 cut(s) 259, 490, 539, 603, 730, 1031, 1061
CviQI GTAC 2 cut(s) 252, 668
DdeI CTNAG 2 cut(s) 575, 967
DinI GGCGCC 1 cut(s) 334
DpnI GATC 5 cut(s) 279, 317, 438, 1083, 1123
DpnII GATC 5 cut(s) 277, 315, 436, 1081, 1121
DraI TTTAAA 1 cut(s) 120
EaeI YGGCCR 1 cut(s) 627
Eam1104I CTCTTC 5 cut(s) 67, 501, 506, 639, 917
EarI CTCTTC 5 cut(s) 67, 501, 506, 639, 917
EciI GGCGGA 1 cut(s) 234
Ecl136II GAGCTC 1 cut(s) 649
Eco130I CCWWGG 2 cut(s) 258, 602
Eco24I GRGCYC 1 cut(s) 651
Eco53kI GAGCTC 1 cut(s) 649
Eco57I CTGAAG 1 cut(s) 795
Eco88I CYCGRG 1 cut(s) 543
EcoICRI GAGCTC 1 cut(s) 649
EcoT14I CCWWGG 2 cut(s) 258, 602
EcoT38I GRGCYC 1 cut(s) 651
EgeI GGCGCC 1 cut(s) 334
EheI GGCGCC 1 cut(s) 334
ErhI CCWWGG 2 cut(s) 258, 602
Esp3I CGTCTC 1 cut(s) 840
FaeI CATG 7 cut(s) 262, 493, 542, 606, 733, 1034, 1064
FaqI GGGAC 3 cut(s) 335, 583, 749
FatI CATG 7 cut(s) 258, 489, 538, 602, 729, 1030, 1060
Fnu4HI GCNGC 3 cut(s) 627, 786, 831
FriOI GRGCYC 1 cut(s) 651
Fsp4HI GCNGC 3 cut(s) 627, 786, 831
FspBI CTAG 3 cut(s) 27, 84, 723
GlaI GCGC 1 cut(s) 334
GluI GCNGC 3 cut(s) 627, 786, 831
HaeII RGCGCY 1 cut(s) 336
HaeIII GGCC 3 cut(s) 548, 629, 1130
HapII CCGG 5 cut(s) 101, 744, 866, 1087, 1102
HgaI GACGC 3 cut(s) 24, 822, 1036
HhaI GCGC 1 cut(s) 335
Hin1I GRCGYC 1 cut(s) 333
Hin1II CATG 7 cut(s) 262, 493, 542, 606, 733, 1034, 1064
Hin6I GCGC 1 cut(s) 333
HinP1I GCGC 1 cut(s) 333
HindIII AAGCTT 2 cut(s) 580, 899
HinfI GANTC 7 cut(s) 129, 357, 419, 719, 802, 963, 1107
HpaII CCGG 5 cut(s) 101, 744, 866, 1087, 1102
HphI GGTGA 3 cut(s) 525, 787, 1076
Hpy188I TCNGA 7 cut(s) 315, 362, 593, 685, 741, 999, 1126
Hpy188III TCNNGA 6 cut(s) 101, 150, 446, 694, 723, 1079
Hpy99I CGWCG 4 cut(s) 40, 215, 341, 515
HpyAV CCTTC 4 cut(s) 179, 450, 953, 1086
HpyCH4III ACNGT 4 cut(s) 211, 304, 659, 708
HpyCH4V TGCA 3 cut(s) 452, 476, 785
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 254, 458, 535
HpyF3I CTNAG 2 cut(s) 575, 967
Hsp92I GRCGYC 1 cut(s) 333
Hsp92II CATG 7 cut(s) 262, 493, 542, 606, 733, 1034, 1064
HspAI GCGC 1 cut(s) 333
KasI GGCGCC 1 cut(s) 332
Kpn2I TCCGGA 1 cut(s) 100
Kzo9I GATC 5 cut(s) 277, 315, 436, 1081, 1121
LguI GCTCTTC 3 cut(s) 67, 501, 639
LmnI GCTCC 5 cut(s) 4, 35, 177, 233, 371
Lsp1109I GCAGC 2 cut(s) 797, 817
LweI GCATC 2 cut(s) 439, 743
MaeI CTAG 3 cut(s) 27, 84, 723
MaeIII GTNAC 6 cut(s) 12, 147, 265, 406, 876, 1095
MalI GATC 5 cut(s) 279, 317, 438, 1083, 1123
MboI GATC 5 cut(s) 277, 315, 436, 1081, 1121
MhlI GDGCHC 2 cut(s) 651, 679
MluCI AATT 3 cut(s) 122, 414, 1074
Mly113I GGCGCC 1 cut(s) 333
MlyI GAGTC 2 cut(s) 796, 957
MroI TCCGGA 1 cut(s) 100
MroXI GAANNNNTTC 2 cut(s) 418, 993
MseI TTAA 4 cut(s) 119, 872, 894, 1147
MspA1I CMGCKG 2 cut(s) 170, 788
MspI CCGG 5 cut(s) 101, 744, 866, 1087, 1102
MspR9I CCNGG 1 cut(s) 866
MvnI CGCG 3 cut(s) 35, 626, 800
MwoI GCNNNNNNNGC 4 cut(s) 32, 254, 458, 535
NarI GGCGCC 1 cut(s) 333
NciI CCSGG 1 cut(s) 866
NcoI CCATGG 2 cut(s) 258, 602
NdeII GATC 5 cut(s) 277, 315, 436, 1081, 1121
NheI GCTAGC 1 cut(s) 26
NlaIII CATG 7 cut(s) 262, 493, 542, 606, 733, 1034, 1064
NlaIV GGNNCC 1 cut(s) 334
NmeAIII GCCGAG 1 cut(s) 1022
NmuCI GTSAC 3 cut(s) 147, 406, 876
NspI RCATGY 1 cut(s) 542
PaeI GCATGC 1 cut(s) 542
PciSI GCTCTTC 3 cut(s) 67, 501, 639
PcsI WCGNNNNNNNCGW 1 cut(s) 336
PdmI GAANNNNTTC 2 cut(s) 418, 993
PfeI GAWTC 5 cut(s) 129, 357, 419, 719, 1107
PflFI GACNNNGTC 1 cut(s) 209
PkrI GCNGC 3 cut(s) 628, 787, 832
PleI GAGTC 2 cut(s) 796, 957
PluTI GGCGCC 1 cut(s) 336
PpsI GAGTC 2 cut(s) 796, 957
Psp124BI GAGCTC 1 cut(s) 651
PspN4I GGNNCC 1 cut(s) 334
PspPI GGNCC 1 cut(s) 546
PstNI CAGNNNCTG 1 cut(s) 410
PsyI GACNNNGTC 1 cut(s) 209
PvuII CAGCTG 1 cut(s) 788
RsaI GTAC 2 cut(s) 253, 669
RsaNI GTAC 2 cut(s) 252, 668
SacI GAGCTC 1 cut(s) 651
SapI GCTCTTC 3 cut(s) 67, 501, 639
SaqAI TTAA 4 cut(s) 119, 872, 894, 1147
SatI GCNGC 3 cut(s) 627, 786, 831
Sau3AI GATC 5 cut(s) 277, 315, 436, 1081, 1121
Sau96I GGNCC 1 cut(s) 546
SchI GAGTC 2 cut(s) 796, 957
ScrFI CCNGG 1 cut(s) 866
SduI GDGCHC 2 cut(s) 651, 679
SfaNI GCATC 2 cut(s) 439, 743
SfcI CTRYAG 1 cut(s) 381
SfoI GGCGCC 1 cut(s) 334
SpeI ACTAGT 1 cut(s) 83
SphI GCATGC 1 cut(s) 542
Sse9I AATT 3 cut(s) 122, 414, 1074
SsiI CCGC 7 cut(s) 33, 168, 219, 536, 626, 798, 1046
SspDI GGCGCC 1 cut(s) 332
SspMI CTAG 3 cut(s) 27, 84, 723
SstI GAGCTC 1 cut(s) 651
StyD4I CCNGG 1 cut(s) 864
StyI CCWWGG 2 cut(s) 258, 602
TaaI ACNGT 4 cut(s) 211, 304, 659, 708
TaqI TCGA 2 cut(s) 510, 1110
TasI AATT 3 cut(s) 122, 414, 1074
TatI WGTACW 1 cut(s) 667
TauI GCSGC 1 cut(s) 629
TfiI GAWTC 5 cut(s) 129, 357, 419, 719, 1107
Tru1I TTAA 4 cut(s) 119, 872, 894, 1147
Tru9I TTAA 4 cut(s) 119, 872, 894, 1147
TscAI CASTG 2 cut(s) 187, 411
TseFI GTSAC 3 cut(s) 147, 406, 876
TseI GCWGC 2 cut(s) 785, 830
Tsp45I GTSAC 3 cut(s) 147, 406, 876
TspDTI ATGAA 5 cut(s) 411, 493, 531, 582, 947
TspGWI ACGGA 5 cut(s) 61, 127, 190, 1016, 1148
TspRI CASTG 2 cut(s) 187, 411
Tth111I GACNNNGTC 1 cut(s) 209
XapI RAATTY 1 cut(s) 1074
XbaI TCTAGA 1 cut(s) 722
XceI RCATGY 1 cut(s) 542
XcmI CCANNNNNNNNNTGG 1 cut(s) 556
XmnI GAANNNNTTC 2 cut(s) 418, 993
XspI CTAG 3 cut(s) 27, 84, 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.